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Items: 1 to 50 of 55

1.

Human snoRNA-93 is processed into a microRNA-like RNA that promotes breast cancer cell invasion.

Patterson DG, Roberts JT, King VM, Houserova D, Barnhill EC, Crucello A, Polska CJ, Brantley LW, Kaufman GC, Nguyen M, Santana MW, Schiller IA, Spicciani JS, Zapata AK, Miller MM, Sherman TD, Ma R, Zhao H, Arora R, Coley AB, Zeidan MM, Tan M, Xi Y, Borchert GM.

NPJ Breast Cancer. 2017 Jul 10;3:25. doi: 10.1038/s41523-017-0032-8. eCollection 2017.

2.

Computational Prediction of MicroRNA Target Genes, Target Prediction Databases, and Web Resources.

Roberts JT, Borchert GM.

Methods Mol Biol. 2017;1617:109-122. doi: 10.1007/978-1-4939-7046-9_8. Review.

PMID:
28540680
3.

Genome-Wide Analysis of MicroRNA-Regulated Transcripts.

Chevalier D, Borchert GM.

Methods Mol Biol. 2017;1617:93-107. doi: 10.1007/978-1-4939-7046-9_7.

PMID:
28540679
4.

Viral MicroRNAs, Host MicroRNAs Regulating Viruses, and Bacterial MicroRNA-Like RNAs.

Cardin SE, Borchert GM.

Methods Mol Biol. 2017;1617:39-56. doi: 10.1007/978-1-4939-7046-9_3. Review.

PMID:
28540675
5.

MicroRNA Expression: Protein Participants in MicroRNA Regulation.

King VM, Borchert GM.

Methods Mol Biol. 2017;1617:27-37. doi: 10.1007/978-1-4939-7046-9_2. Review.

PMID:
28540674
6.

The development of non-coding RNA ontology.

Huang J, Eilbeck K, Smith B, Blake JA, Dou D, Huang W, Natale DA, Ruttenberg A, Huan J, Zimmermann MT, Jiang G, Lin Y, Wu B, Strachan HJ, de Silva N, Kasukurthi MV, Jha VK, He Y, Zhang S, Wang X, Liu Z, Borchert GM, Tan M.

Int J Data Min Bioinform. 2016;15(3):214-232.

7.

OmniSearch: a semantic search system based on the Ontology for MIcroRNA Target (OMIT) for microRNA-target gene interaction data.

Huang J, Gutierrez F, Strachan HJ, Dou D, Huang W, Smith B, Blake JA, Eilbeck K, Natale DA, Lin Y, Wu B, Silva Nd, Wang X, Liu Z, Borchert GM, Tan M, Ruttenberg A.

J Biomed Semantics. 2016 May 10;7:25. doi: 10.1186/s13326-016-0064-2. eCollection 2016.

8.

The Non-Coding RNA Ontology (NCRO): a comprehensive resource for the unification of non-coding RNA biology.

Huang J, Eilbeck K, Smith B, Blake JA, Dou D, Huang W, Natale DA, Ruttenberg A, Huan J, Zimmermann MT, Jiang G, Lin Y, Wu B, Strachan HJ, He Y, Zhang S, Wang X, Liu Z, Borchert GM, Tan M.

J Biomed Semantics. 2016 May 4;7:24. doi: 10.1186/s13326-016-0066-0. eCollection 2016.

9.

Novel small RNA (sRNA) landscape of the starvation-stress response transcriptome of Salmonella enterica serovar typhimurium.

Amin SV, Roberts JT, Patterson DG, Coley AB, Allred JA, Denner JM, Johnson JP, Mullen GE, O'Neal TK, Smith JT, Cardin SE, Carr HT, Carr SL, Cowart HE, DaCosta DH, Herring BR, King VM, Polska CJ, Ward EE, Wise AA, McAllister KN, Chevalier D, Spector MP, Borchert GM.

RNA Biol. 2016;13(3):331-42. doi: 10.1080/15476286.2016.1144010. Epub 2016 Feb 6.

10.

An oxidative DNA "damage" and repair mechanism localized in the VEGF promoter is important for hypoxia-induced VEGF mRNA expression.

Pastukh V, Roberts JT, Clark DW, Bardwell GC, Patel M, Al-Mehdi AB, Borchert GM, Gillespie MN.

Am J Physiol Lung Cell Mol Physiol. 2015 Dec 1;309(11):L1367-75. doi: 10.1152/ajplung.00236.2015. Epub 2015 Oct 2.

11.

Ornithine-δ-Aminotransferase Inhibits Neurogenesis During Xenopus Embryonic Development.

Peng Y, Cooper SK, Li Y, Mei JM, Qiu S, Borchert GL, Donald SP, Kung HF, Phang JM.

Invest Ophthalmol Vis Sci. 2015 Apr;56(4):2486-97. doi: 10.1167/iovs.15-16509.

12.

Tumour necrosis factor-α contributes to improved cardiac ischaemic tolerance in rats adapted to chronic continuous hypoxia.

Chytilová A, Borchert GH, Mandíková-Alánová P, Hlaváčková M, Kopkan L, Khan MA, Imig JD, Kolář F, Neckář J.

Acta Physiol (Oxf). 2015 May;214(1):97-108. doi: 10.1111/apha.12489. Epub 2015 Mar 28.

PMID:
25760892
13.

"On the job" learning: A bioinformatics course incorporating undergraduates in actual research projects and manuscript submissions.

Smith JT, Harris JC, Lopez OJ, Valverde L, Borchert GM.

Biochem Mol Biol Educ. 2015 May-Jun;43(3):154-61. doi: 10.1002/bmb.20848. Epub 2015 Jan 30.

14.

Bone-remodeling transcript levels are independent of perching in end-of-lay white leghorn chickens.

Dale MD, Mortimer EM, Kolli S, Achramowicz E, Borchert G, Juliano SA, Halkyard S, Sietz N, Gatto C, Hester PY, Rubin DA.

Int J Mol Sci. 2015 Jan 23;16(2):2663-77. doi: 10.3390/ijms16022663.

15.

Involvement of PKCepsilon in cardioprotection induced by adaptation to chronic continuous hypoxia.

Holzerová K, Hlaváčková M, Žurmanová J, Borchert G, Neckář J, Kolář F, Novák F, Nováková O.

Physiol Res. 2015;64(2):191-201. Epub 2014 Oct 15.

16.

Burgeoning evidence indicates that microRNAs were initially formed from transposable element sequences.

Roberts JT, Cardin SE, Borchert GM.

Mob Genet Elements. 2014 May 22;4:e29255. eCollection 2014. Review.

17.

OMIT: dynamic, semi-automated ontology development for the microRNA domain.

Huang J, Dang J, Borchert GM, Eilbeck K, Zhang H, Xiong M, Jiang W, Wu H, Blake JA, Natale DA, Tan M.

PLoS One. 2014 Jul 15;9(7):e100855. doi: 10.1371/journal.pone.0100855. eCollection 2014.

18.

Continuing analysis of microRNA origins: Formation from transposable element insertions and noncoding RNA mutations.

Roberts JT, Cooper EA, Favreau CJ, Howell JS, Lane LG, Mills JE, Newman DC, Perry TJ, Russell ME, Wallace BM, Borchert GM.

Mob Genet Elements. 2013 Nov 1;3(6):e27755. Epub 2014 Jan 10.

19.

Brief daily episode of normoxia inhibits cardioprotection conferred by chronic continuous hypoxia. Role of oxidative stress and BKCa channels.

Neckár J, Borchert GH, Hlousková P, Mícová P, Nováková O, Novák F, Hroch M, Papousek F, Ost'ádal B, Kolár F.

Curr Pharm Des. 2013;19(39):6880-9.

PMID:
23590154
20.

Pharmacological activation of mitochondrial BK(Ca) channels protects isolated cardiomyocytes against simulated reperfusion-induced injury.

Borchert GH, Hlaváčková M, Kolář F.

Exp Biol Med (Maywood). 2013 Feb;238(2):233-41. doi: 10.1177/1535370212474596.

PMID:
23576804
21.

The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage.

Shaffer HB, Minx P, Warren DE, Shedlock AM, Thomson RC, Valenzuela N, Abramyan J, Amemiya CT, Badenhorst D, Biggar KK, Borchert GM, Botka CW, Bowden RM, Braun EL, Bronikowski AM, Bruneau BG, Buck LT, Capel B, Castoe TA, Czerwinski M, Delehaunty KD, Edwards SV, Fronick CC, Fujita MK, Fulton L, Graves TA, Green RE, Haerty W, Hariharan R, Hernandez O, Hillier LW, Holloway AK, Janes D, Janzen FJ, Kandoth C, Kong L, de Koning AP, Li Y, Literman R, McGaugh SE, Mork L, O'Laughlin M, Paitz RT, Pollock DD, Ponting CP, Radhakrishnan S, Raney BJ, Richman JM, St John J, Schwartz T, Sethuraman A, Spinks PQ, Storey KB, Thane N, Vinar T, Zimmerman LM, Warren WC, Mardis ER, Wilson RK.

Genome Biol. 2013 Mar 28;14(3):R28. doi: 10.1186/gb-2013-14-3-r28.

22.

OrbId: Origin-based identification of microRNA targets.

Filshtein TJ, Mackenzie CO, Dale MD, Dela-Cruz PS, Ernst DM, Frankenberger EA, He C, Heath KL, Jones AS, Jones DK, King ER, Maher MB, Mitchell TJ, Morgan RR, Sirobhushanam S, Halkyard SD, Tiwari KB, Rubin DA, Borchert GM, Larson ED.

Mob Genet Elements. 2012 Jul 1;2(4):184-192.

23.

G-quadruplex recognition activities of E. Coli MutS.

Ehrat EA, Johnson BR, Williams JD, Borchert GM, Larson ED.

BMC Mol Biol. 2012 Jul 2;13:23. doi: 10.1186/1471-2199-13-23.

24.

Comprehensive analysis of microRNA genomic loci identifies pervasive repetitive-element origins.

Borchert GM, Holton NW, Williams JD, Hernan WL, Bishop IP, Dembosky JA, Elste JE, Gregoire NS, Kim JA, Koehler WW, Lengerich JC, Medema AA, Nguyen MA, Ower GD, Rarick MA, Strong BN, Tardi NJ, Tasker NM, Wozniak DJ, Gatto C, Larson ED.

Mob Genet Elements. 2011 May;1(1):8-17.

25.

Repression of human activation induced cytidine deaminase by miR-93 and miR-155.

Borchert GM, Holton NW, Larson ED.

BMC Cancer. 2011 Aug 10;11:347. doi: 10.1186/1471-2407-11-347.

26.

Developmental cardiac hypertrophy in a mouse model of prolidase deficiency.

Jung S, Silvius D, Nolan KA, Borchert GL, Millet YH, Phang JM, Gunn TM.

Birth Defects Res A Clin Mol Teratol. 2011 Apr;91(4):204-17. doi: 10.1002/bdra.20789. Epub 2011 Apr 6.

PMID:
21472842
27.

The Nitric Oxide Prodrug V-PROLI/NO Inhibits Cellular Uptake of Proline.

Hong SY, Borchert GL, Maciag AE, Nandurdikar RS, Saavedra JE, Keefer LK, Phang JM, Chakrapani H.

ACS Med Chem Lett. 2010 Nov 11;1(8):386-389.

28.

Mitochondrial BKCa channels contribute to protection of cardiomyocytes isolated from chronically hypoxic rats.

Borchert GH, Yang C, Kolár F.

Am J Physiol Heart Circ Physiol. 2011 Feb;300(2):H507-13. doi: 10.1152/ajpheart.00594.2010. Epub 2010 Nov 26.

29.

Histone H2A and H2B are monoubiquitinated at AID-targeted loci.

Borchert GM, Holton NW, Edwards KA, Vogel LA, Larson ED.

PLoS One. 2010 Jul 16;5(7):e11641. doi: 10.1371/journal.pone.0011641.

30.

Adenosine deamination in human transcripts generates novel microRNA binding sites.

Borchert GM, Gilmore BL, Spengler RM, Xing Y, Lanier W, Bhattacharya D, Davidson BL.

Hum Mol Genet. 2009 Dec 15;18(24):4801-7. doi: 10.1093/hmg/ddp443. Epub 2009 Sep 23.

31.

Proline oxidase functions as a mitochondrial tumor suppressor in human cancers.

Liu Y, Borchert GL, Donald SP, Diwan BA, Anver M, Phang JM.

Cancer Res. 2009 Aug 15;69(16):6414-22. doi: 10.1158/0008-5472.CAN-09-1223. Epub 2009 Aug 4.

32.

Chronic intermittent hypoxia induces 11beta-hydroxysteroid dehydrogenase in rat heart.

Klusonová P, Reháková L, Borchert G, Vagnerová K, Neckár J, Ergang P, Miksík I, Kolár F, Pácha J.

Endocrinology. 2009 Sep;150(9):4270-7. doi: 10.1210/en.2008-1493. Epub 2009 May 21.

PMID:
19470702
33.

Proline oxidase, a p53-induced gene, targets COX-2/PGE2 signaling to induce apoptosis and inhibit tumor growth in colorectal cancers.

Liu Y, Borchert GL, Surazynski A, Phang JM.

Oncogene. 2008 Dec 4;27(53):6729-37. doi: 10.1038/onc.2008.322. Epub 2008 Sep 15.

PMID:
18794809
34.

2-hydroxyoleic acid affects cardiomyocyte [Ca2+]i transient and contractility in a region-dependent manner.

Borchert GH, Giggey M, Kolar F, Wong TM, Backx PH, Escriba PV.

Am J Physiol Heart Circ Physiol. 2008 Apr;294(4):H1948-55. doi: 10.1152/ajpheart.01209.2007. Epub 2008 Feb 22.

35.

RNA polymerase III transcribes human microRNAs.

Borchert GM, Lanier W, Davidson BL.

Nat Struct Mol Biol. 2006 Dec;13(12):1097-101. Epub 2006 Nov 12.

PMID:
17099701
36.

Stimulation of phosphoinositide kinases by thrombin is restricted to the plasma membrane in platelets.

Borchert GH, Mauco G, Racaud-Sultan C, Breton-Douillon M, Plantavid M, Chap H.

Platelets. 1998;9(2):97-102.

PMID:
16793683
37.

Proline oxidase activates both intrinsic and extrinsic pathways for apoptosis: the role of ROS/superoxides, NFAT and MEK/ERK signaling.

Liu Y, Borchert GL, Surazynski A, Hu CA, Phang JM.

Oncogene. 2006 Sep 14;25(41):5640-7. Epub 2006 Apr 17.

PMID:
16619034
38.

Further study on the role of HSP70 on Ca2+ homeostasis in rat ventricular myocytes subjected to simulated ischemia.

Liu J, Kam KW, Borchert GH, Kravtsov GM, Ballard HJ, Wong TM.

Am J Physiol Cell Physiol. 2006 Feb;290(2):C583-91. Epub 2005 Oct 5.

39.

MnSOD inhibits proline oxidase-induced apoptosis in colorectal cancer cells.

Liu Y, Borchert GL, Donald SP, Surazynski A, Hu CA, Weydert CJ, Oberley LW, Phang JM.

Carcinogenesis. 2005 Aug;26(8):1335-42. Epub 2005 Apr 7.

PMID:
15817612
40.

The Gbetagamma dimer drives the interaction of heterotrimeric Gi proteins with nonlamellar membrane structures.

Vögler O, Casas J, Capó D, Nagy T, Borchert G, Martorell G, Escribá PV.

J Biol Chem. 2004 Aug 27;279(35):36540-5. Epub 2004 Jul 1.

41.
42.
44.

First direct observation of coulomb explosion during the formation of exotic atoms

Siems T, Anagnostopoulos DF, Borchert G, Gotta D, Hauser P, Kirch K, Simons LM, El-Khoury P, Indelicato P, Augsburger M, Chatellard D, Egger J.

Phys Rev Lett. 2000 May 15;84(20):4573-6.

PMID:
10990743
45.

Characterization of the BRCA1-like immunoreactivity of human seminal plasma.

Angelopoulou K, Borchert G, Melegos DN, Lianidou E, Lilja H, Diamandis EP.

Urology. 1999 Oct;54(4):753-62.

PMID:
10510943
46.

Prostate specific antigen molecular forms in breast cyst fluid and serum of women with fibrocystic breast disease.

Borchert GH, Yu H, Tomlinson G, Giai M, Roagna R, Ponzone R, Sgro L, Diamandis EP.

J Clin Lab Anal. 1999;13(2):75-81.

PMID:
10102136
47.

Quantification of pepsinogen C and prostaglandin D synthase in breast cyst fluid and their potential utility for cyst type classification.

Borchert GH, Melegos DN, Yu H, Giai M, Roagna R, Ponzone R, Sgro L, Diamandis EP.

Clin Biochem. 1999 Feb;32(1):39-44.

PMID:
10074890
48.

Altered expression of PDE1 and PDE4 cyclic nucleotide phosphodiesterase isoforms in 7-oxo-prostacyclin-preconditioned rat heart.

Kostic MM, Erdogan S, Rena G, Borchert G, Hoch B, Bartel S, Scotland G, Huston E, Houslay MD, Krause EG.

J Mol Cell Cardiol. 1997 Nov;29(11):3135-46.

PMID:
9405187
49.

Immunofluorometric assay of pepsinogen C and preliminary clinical applications.

Diamandis EP, Nadkarni S, Bhaumik B, Abdelrahman A, Melegos DN, Borchert G, Black MH, Alonso M, Salas A, de los Toyos JR, Sampedro A, López-Otín C.

Clin Chem. 1997 Aug;43(8 Pt 1):1365-71.

50.

Elevated levels of prostate-specific antigen in serum of women with fibroadenomas and breast cysts.

Borchert GH, Giai M, Diamandis EP.

J Natl Cancer Inst. 1997 Apr 16;89(8):587-8. No abstract available.

PMID:
9106652

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