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Items: 1 to 50 of 608

1.

Randomized Lasso Links Microbial Taxa with Aquatic Functional Groups Inferred from Flow Cytometry.

Rubbens P, Schmidt ML, Props R, Biddanda BA, Boon N, Waegeman W, Denef VJ.

mSystems. 2019 Sep 10;4(5). pii: e00093-19. doi: 10.1128/mSystems.00093-19.

2.

Enriched hydrogen-oxidizing microbiomes show a high diversity of co-existing hydrogen-oxidizing bacteria.

Ehsani E, Dumolin C, Arends JBA, Kerckhof FM, Hu X, Vandamme P, Boon N.

Appl Microbiol Biotechnol. 2019 Oct;103(19):8241-8253. doi: 10.1007/s00253-019-10082-z. Epub 2019 Sep 3.

PMID:
31482282
3.

CRB2 Loss in Rod Photoreceptors Is Associated with Progressive Loss of Retinal Contrast Sensitivity.

Alves CH, Boon N, Mulder AA, Koster AJ, Jost CR, Wijnholds J.

Int J Mol Sci. 2019 Aug 21;20(17). pii: E4069. doi: 10.3390/ijms20174069.

4.

Status and potential of bacterial genomics for public health practice: a scoping review.

Van Goethem N, Descamps T, Devleesschauwer B, Roosens NHC, Boon NAM, Van Oyen H, Robert A.

Implement Sci. 2019 Aug 13;14(1):79. doi: 10.1186/s13012-019-0930-2. Review.

5.

Tomato plants rather than fertilizers drive microbial community structure in horticultural growing media.

Grunert O, Robles-Aguilar AA, Hernandez-Sanabria E, Schrey SD, Reheul D, Van Labeke MC, Vlaeminck SE, Vandekerckhove TGL, Mysara M, Monsieurs P, Temperton VM, Boon N, Jablonowski ND.

Sci Rep. 2019 Jul 2;9(1):9561. doi: 10.1038/s41598-019-45290-0.

6.

Development of antiseptic adaptation and cross-adapatation in selected oral pathogens in vitro.

Verspecht T, Rodriguez Herrero E, Khodaparast L, Khodaparast L, Boon N, Bernaerts K, Quirynen M, Teughels W.

Sci Rep. 2019 Jun 6;9(1):8326. doi: 10.1038/s41598-019-44822-y.

7.

Reactivation of Microbial Strains and Synthetic Communities After a Spaceflight to the International Space Station: Corroborating the Feasibility of Essential Conversions in the MELiSSA Loop.

Ilgrande C, Mastroleo F, Christiaens MER, Lindeboom REF, Prat D, Van Hoey O, Ambrozova I, Coninx I, Heylen W, Pommerening-Roser A, Spieck E, Boon N, Vlaeminck SE, Leys N, Clauwaert P.

Astrobiology. 2019 Sep;19(9):1167-1176. doi: 10.1089/ast.2018.1973. Epub 2019 Jun 4.

PMID:
31161957
8.

Learning Single-Cell Distances from Cytometry Data.

Nguyen B, Rubbens P, Kerckhof FM, Boon N, De Baets B, Waegeman W.

Cytometry A. 2019 Jul;95(7):782-791. doi: 10.1002/cyto.a.23792. Epub 2019 May 17.

PMID:
31099963
9.

Plant species identity and soil characteristics determine rhizosphere soil bacteria community composition in European temperate forests.

Ma S, De Frenne P, Boon N, Brunet J, Cousins SAO, Decocq G, Kolb A, Lemke I, Liira J, Naaf T, Orczewska A, Plue J, Wulf M, Verheyen K.

FEMS Microbiol Ecol. 2019 Jun 1;95(6). pii: fiz063. doi: 10.1093/femsec/fiz063.

PMID:
31054240
10.

Determining stoichiometry and kinetics of two thermophilic nitrifying communities as a crucial step in the development of thermophilic nitrogen removal.

Vandekerckhove TGL, Kerckhof FM, De Mulder C, Vlaeminck SE, Boon N.

Water Res. 2019 Jun 1;156:34-45. doi: 10.1016/j.watres.2019.03.008. Epub 2019 Mar 14.

PMID:
30904709
11.

13C Incorporation as a Tool to Estimate Biomass Yields in Thermophilic and Mesophilic Nitrifying Communities.

Vandekerckhove TGL, Bodé S, De Mulder C, Vlaeminck SE, Boon N.

Front Microbiol. 2019 Feb 13;10:192. doi: 10.3389/fmicb.2019.00192. eCollection 2019.

12.

Coculturing Bacteria Leads to Reduced Phenotypic Heterogeneities.

Heyse J, Buysschaert B, Props R, Rubbens P, Skirtach AG, Waegeman W, Boon N.

Appl Environ Microbiol. 2019 Apr 4;85(8). pii: e02814-18. doi: 10.1128/AEM.02814-18. Print 2019 Apr 15.

PMID:
30796063
13.

Gene Expansion and Positive Selection as Bacterial Adaptations to Oligotrophic Conditions.

Props R, Monsieurs P, Vandamme P, Leys N, Denef VJ, Boon N.

mSphere. 2019 Feb 6;4(1). pii: e00011-19. doi: 10.1128/mSphereDirect.00011-19.

14.

Metabolic and Proteomic Responses to Salinity in Synthetic Nitrifying Communities of Nitrosomonas spp. and Nitrobacter spp.

Ilgrande C, Leroy B, Wattiez R, Vlaeminck SE, Boon N, Clauwaert P.

Front Microbiol. 2018 Nov 30;9:2914. doi: 10.3389/fmicb.2018.02914. eCollection 2018.

15.

Reduced TCA cycle rates at high hydrostatic pressure hinder hydrocarbon degradation and obligate oil degraders in natural, deep-sea microbial communities.

Scoma A, Heyer R, Rifai R, Dandyk C, Marshall I, Kerckhof FM, Marietou A, Boshker HTS, Meysman FJR, Malmos KG, Vosegaard T, Vermeir P, Banat IM, Benndorf D, Boon N.

ISME J. 2019 Apr;13(4):1004-1018. doi: 10.1038/s41396-018-0324-5. Epub 2018 Dec 12.

PMID:
30542078
16.

Combined Consumption of Beef-Based Cooked Mince and Sucrose Stimulates Oxidative Stress, Cardiac Hypertrophy, and Colonic Outgrowth of Desulfovibrionaceae in Rats.

Van Hecke T, De Vrieze J, Boon N, De Vos WH, Vossen E, De Smet S.

Mol Nutr Food Res. 2019 Jan;63(2):e1800962. doi: 10.1002/mnfr.201800962. Epub 2018 Nov 14.

PMID:
30379400
17.

Characterization of the bacterial communities on recent Icelandic volcanic deposits of different ages.

Byloos B, Monsieurs P, Mysara M, Leys N, Boon N, Van Houdt R.

BMC Microbiol. 2018 Sep 24;18(1):122. doi: 10.1186/s12866-018-1262-0.

18.

Nitrite producing bacteria inhibit reinforcement bar corrosion in cementitious materials.

Erşan YÇ, Van Tittelboom K, Boon N, De Belie N.

Sci Rep. 2018 Sep 20;8(1):14092. doi: 10.1038/s41598-018-32463-6.

19.

Temperature impact on sludge yield, settleability and kinetics of three heterotrophic conversions corroborates the prospect of thermophilic biological nitrogen removal.

Vandekerckhove TGL, De Mulder C, Boon N, Vlaeminck SE.

Bioresour Technol. 2018 Dec;269:104-112. doi: 10.1016/j.biortech.2018.08.012. Epub 2018 Aug 4.

PMID:
30153548
20.

Coronary CT Angiography and 5-Year Risk of Myocardial Infarction.

SCOT-HEART Investigators, Newby DE, Adamson PD, Berry C, Boon NA, Dweck MR, Flather M, Forbes J, Hunter A, Lewis S, MacLean S, Mills NL, Norrie J, Roditi G, Shah ASV, Timmis AD, van Beek EJR, Williams MC.

N Engl J Med. 2018 Sep 6;379(10):924-933. doi: 10.1056/NEJMoa1805971. Epub 2018 Aug 25.

21.

Detection of microbial disturbances in a drinking water microbial community through continuous acquisition and advanced analysis of flow cytometry data.

Props R, Rubbens P, Besmer M, Buysschaert B, Sigrist J, Weilenmann H, Waegeman W, Boon N, Hammes F.

Water Res. 2018 Nov 15;145:73-82. doi: 10.1016/j.watres.2018.08.013. Epub 2018 Aug 7.

PMID:
30121434
22.

Efficient configurational-bias Monte-Carlo simulations of chain molecules with "swarms" of trial configurations.

Boon N.

J Chem Phys. 2018 Aug 14;149(6):064109. doi: 10.1063/1.5029566.

PMID:
30111122
23.

Photosynthetic oxygenation for urine nitrification.

Muys M, Coppens J, Boon N, Vlaeminck SE.

Water Sci Technol. 2018 Aug;78(1-2):183-194. doi: 10.2166/wst.2018.200.

PMID:
30101801
24.

High-resolution mapping and modeling of anammox recovery from recurrent oxygen exposure.

Seuntjens D, Carvajal-Arroyo JM, Ruopp M, Bunse P, De Mulder CP, Lochmatter S, Agrawal S, Boon N, Lackner S, Vlaeminck SE.

Water Res. 2018 Nov 1;144:522-531. doi: 10.1016/j.watres.2018.07.024. Epub 2018 Jul 11.

PMID:
30077912
25.

Decoupling Livestock from Land Use through Industrial Feed Production Pathways.

Pikaar I, Matassa S, Bodirsky BL, Weindl I, Humpenöder F, Rabaey K, Boon N, Bruschi M, Yuan Z, van Zanten H, Herrero M, Verstraete W, Popp A.

Environ Sci Technol. 2018 Jul 3;52(13):7351-7359. doi: 10.1021/acs.est.8b00216. Epub 2018 Jun 20.

PMID:
29923399
26.

Label-free Raman characterization of bacteria calls for standardized procedures.

García-Timermans C, Rubbens P, Kerckhof FM, Buysschaert B, Khalenkow D, Waegeman W, Skirtach AG, Boon N.

J Microbiol Methods. 2018 Aug;151:69-75. doi: 10.1016/j.mimet.2018.05.027. Epub 2018 Jun 14.

PMID:
29909167
27.

Synergistic Exposure of Return-Sludge to Anaerobic Starvation, Sulfide, and Free Ammonia to Suppress Nitrite Oxidizing Bacteria.

Seuntjens D, Van Tendeloo M, Chatzigiannidou I, Carvajal-Arroyo JM, Vandendriessche S, Vlaeminck SE, Boon N.

Environ Sci Technol. 2018 Aug 7;52(15):8725-8732. doi: 10.1021/acs.est.7b06591. Epub 2018 Jul 16.

PMID:
29787677
28.

Usherin defects lead to early-onset retinal dysfunction in zebrafish.

Dona M, Slijkerman R, Lerner K, Broekman S, Wegner J, Howat T, Peters T, Hetterschijt L, Boon N, de Vrieze E, Sorusch N, Wolfrum U, Kremer H, Neuhauss S, Zang J, Kamermans M, Westerfield M, Phillips J, van Wijk E.

Exp Eye Res. 2018 Aug;173:148-159. doi: 10.1016/j.exer.2018.05.015. Epub 2018 May 16.

29.

Taking the technical microbiome into the next decade.

De Vrieze J, Boon N, Verstraete W.

Environ Microbiol. 2018 Jun;20(6):1991-2000. doi: 10.1111/1462-2920.14269. Epub 2018 Aug 9.

PMID:
29745026
30.

Deswelling behaviour of ionic microgel particles from low to ultra-high densities.

Nöjd S, Holmqvist P, Boon N, Obiols-Rabasa M, Mohanty PS, Schweins R, Schurtenberger P.

Soft Matter. 2018 May 23;14(20):4150-4159. doi: 10.1039/c8sm00390d.

PMID:
29744516
31.

Characterization of spoilage markers in modified atmosphere packaged iceberg lettuce.

Ioannidis AG, Kerckhof FM, Riahi Drif Y, Vanderroost M, Boon N, Ragaert P, De Meulenaer B, Devlieghere F.

Int J Food Microbiol. 2018 Aug 20;279:1-13. doi: 10.1016/j.ijfoodmicro.2018.04.034. Epub 2018 Apr 22.

PMID:
29715602
32.

Barcoding hybrids: heterogeneous distribution of Schistosoma haematobium × Schistosoma bovis hybrids across the Senegal River Basin.

Boon NAM, Van Den Broeck F, Faye D, Volckaert FAM, Mboup S, Polman K, Huyse T.

Parasitology. 2018 Apr;145(5):634-645. doi: 10.1017/S0031182018000525. Epub 2018 Apr 18.

PMID:
29667570
33.

Oral prebiotics and the influence of environmental conditions in vitro.

Slomka V, Herrero ER, Boon N, Bernaerts K, Trivedi HM, Daep C, Quirynen M, Teughels W.

J Periodontol. 2018 Jun;89(6):708-717. doi: 10.1002/JPER.17-0437.

PMID:
29577296
34.

Pinpointing wastewater and process parameters controlling the AOB to NOB activity ratio in sewage treatment plants.

Seuntjens D, Han M, Kerckhof FM, Boon N, Al-Omari A, Takacs I, Meerburg F, De Mulder C, Wett B, Bott C, Murthy S, Carvajal Arroyo JM, De Clippeleir H, Vlaeminck SE.

Water Res. 2018 Jul 1;138:37-46. doi: 10.1016/j.watres.2017.11.044. Epub 2017 Nov 23.

PMID:
29571087
35.

Clinical concentrations of peroxidases cause dysbiosis in in vitro oral biofilms.

Herrero ER, Boon N, Bernaerts K, Slomka V, Verspecht T, Quirynen M, Teughels W.

J Periodontal Res. 2018 Jun;53(3):457-466. doi: 10.1111/jre.12534. Epub 2018 Mar 8.

PMID:
29516514
36.

High-Sensitivity Cardiac Troponin I and the Diagnosis of Coronary Artery Disease in Patients With Suspected Angina Pectoris.

Adamson PD, Hunter A, Madsen DM, Shah ASV, McAllister DA, Pawade TA, Williams MC, Berry C, Boon NA, Flather M, Forbes J, McLean S, Roditi G, Timmis AD, van Beek EJR, Dweck MR, Mickley H, Mills NL, Newby DE.

Circ Cardiovasc Qual Outcomes. 2018 Feb;11(2):e004227. doi: 10.1161/CIRCOUTCOMES.117.004227.

37.

Isotope Fractionation in Biogas Allows Direct Microbial Community Stability Monitoring in Anaerobic Digestion.

De Vrieze J, De Waele M, Boeckx P, Boon N.

Environ Sci Technol. 2018 Jun 5;52(11):6704-6713. doi: 10.1021/acs.est.8b00723. Epub 2018 May 24.

PMID:
29432683
38.

Dysbiotic Biofilms Deregulate the Periodontal Inflammatory Response.

Herrero ER, Fernandes S, Verspecht T, Ugarte-Berzal E, Boon N, Proost P, Bernaerts K, Quirynen M, Teughels W.

J Dent Res. 2018 May;97(5):547-555. doi: 10.1177/0022034517752675. Epub 2018 Feb 2.

PMID:
29394879
39.

Initial evenness determines diversity and cell density dynamics in synthetic microbial ecosystems.

Ehsani E, Hernandez-Sanabria E, Kerckhof FM, Props R, Vilchez-Vargas R, Vital M, Pieper DH, Boon N.

Sci Rep. 2018 Jan 10;8(1):340. doi: 10.1038/s41598-017-18668-1.

40.

Flow cytometric fingerprinting for microbial strain discrimination and physiological characterization.

Buysschaert B, Kerckhof FM, Vandamme P, De Baets B, Boon N.

Cytometry A. 2018 Feb;93(2):201-212. doi: 10.1002/cyto.a.23302. Epub 2017 Dec 20.

41.

Microbiological, chemical and sensory spoilage analysis of raw Atlantic cod (Gadus morhua) stored under modified atmospheres.

Kuuliala L, Al Hage Y, Ioannidis AG, Sader M, Kerckhof FM, Vanderroost M, Boon N, De Baets B, De Meulenaer B, Ragaert P, Devlieghere F.

Food Microbiol. 2018 Apr;70:232-244. doi: 10.1016/j.fm.2017.10.011. Epub 2017 Oct 24.

PMID:
29173632
42.

Stripping flow cytometry: How many detectors do we need for bacterial identification?

Rubbens P, Props R, Garcia-Timermans C, Boon N, Waegeman W.

Cytometry A. 2017 Dec;91(12):1184-1191. doi: 10.1002/cyto.a.23284. Epub 2017 Nov 22.

43.

Evolutionary epidemiology of schistosomiasis: linking parasite genetics with disease phenotype in humans.

Huyse T, Boon NAM, Van den Broeck F, Mbow M, Chaturvedi A, Meurs L, Volckaert FAM, Polman K.

Int J Parasitol. 2018 Feb;48(2):107-115. doi: 10.1016/j.ijpara.2017.07.010. Epub 2017 Nov 15.

PMID:
29154994
44.

Characterization of Cefotaxime- and Ciprofloxacin-Resistant Commensal Escherichia coli Originating from Belgian Farm Animals Indicates High Antibiotic Resistance Transfer Rates.

Lambrecht E, Van Meervenne E, Boon N, Van de Wiele T, Wattiau P, Herman L, Heyndrickx M, Van Coillie E.

Microb Drug Resist. 2018 Jul/Aug;24(6):707-717. doi: 10.1089/mdr.2017.0226. Epub 2017 Nov 17.

PMID:
29148895
45.

Laboratory-Scale Simulation and Real-Time Tracking of a Microbial Contamination Event and Subsequent Shock-Chlorination in Drinking Water.

Besmer MD, Sigrist JA, Props R, Buysschaert B, Mao G, Boon N, Hammes F.

Front Microbiol. 2017 Oct 4;8:1900. doi: 10.3389/fmicb.2017.01900. eCollection 2017.

46.

Ureolytic Activity and Its Regulation in Vibrio campbellii and Vibrio harveyi in Relation to Nitrogen Recovery from Human Urine.

Defoirdt T, Vlaeminck SE, Sun X, Boon N, Clauwaert P.

Environ Sci Technol. 2017 Nov 21;51(22):13335-13343. doi: 10.1021/acs.est.7b03829. Epub 2017 Nov 9.

PMID:
29083891
47.

Flow cytometric monitoring of bacterioplankton phenotypic diversity predicts high population-specific feeding rates by invasive dreissenid mussels.

Props R, Schmidt ML, Heyse J, Vanderploeg HA, Boon N, Denef VJ.

Environ Microbiol. 2018 Feb;20(2):521-534. doi: 10.1111/1462-2920.13953. Epub 2017 Nov 3.

48.

Kinetic exploration of intracellular nitrate storage in marine microalgae.

Decostere B, Coppens J, Vervaeren H, Vlaeminck SE, Gelder L, Boon N, Nopens I, Hulle SWHV.

J Environ Sci Health A Tox Hazard Subst Environ Eng. 2017 Dec 6;52(14):1303-1311. doi: 10.1080/10934529.2017.1364921. Epub 2017 Sep 26.

PMID:
28949865
49.

Butyrate-producing bacteria supplemented in vitro to Crohn's disease patient microbiota increased butyrate production and enhanced intestinal epithelial barrier integrity.

Geirnaert A, Calatayud M, Grootaert C, Laukens D, Devriese S, Smagghe G, De Vos M, Boon N, Van de Wiele T.

Sci Rep. 2017 Sep 13;7(1):11450. doi: 10.1038/s41598-017-11734-8.

50.

Diagnostic and prognostic benefits of computed tomography coronary angiography using the 2016 National Institute for Health and Care Excellence guidance within a randomised trial.

Adamson PD, Hunter A, Williams MC, Shah ASV, McAllister DA, Pawade TA, Dweck MR, Mills NL, Berry C, Boon NA, Clark E, Flather M, Forbes J, McLean S, Roditi G, van Beek EJR, Timmis AD, Newby DE.

Heart. 2018 Feb;104(3):207-214. doi: 10.1136/heartjnl-2017-311508. Epub 2017 Aug 27.

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