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Items: 8

1.

Deep sequencing of bone marrow microenvironments of patients with del(5q) myelodysplastic syndrome reveals imprints of antigenic selection as well as generation of novel T-cell clusters as a response pattern to lenalidomide.

Mährle T, Akyüz N, Fuchs P, Bonzanni N, Simnica D, Germing U, Asemissen AM, Jann JC, Nolte F, Hofmann WK, Nowak D, Binder M.

Haematologica. 2019 Jul;104(7):1355-1364. doi: 10.3324/haematol.2018.208223. Epub 2019 Jan 17.

2.

PTEN Loss in E-Cadherin-Deficient Mouse Mammary Epithelial Cells Rescues Apoptosis and Results in Development of Classical Invasive Lobular Carcinoma.

Boelens MC, Nethe M, Klarenbeek S, de Ruiter JR, Schut E, Bonzanni N, Zeeman AL, Wientjens E, van der Burg E, Wessels L, van Amerongen R, Jonkers J.

Cell Rep. 2016 Aug 23;16(8):2087-2101. doi: 10.1016/j.celrep.2016.07.059. Epub 2016 Aug 11.

3.

BioASF: a framework for automatically generating executable pathway models specified in BioPAX.

Haydarlou R, Jacobsen A, Bonzanni N, Feenstra KA, Abeln S, Heringa J.

Bioinformatics. 2016 Jun 15;32(12):i60-i69. doi: 10.1093/bioinformatics/btw250.

4.

An experimentally validated network of nine haematopoietic transcription factors reveals mechanisms of cell state stability.

Schütte J, Wang H, Antoniou S, Jarratt A, Wilson NK, Riepsaame J, Calero-Nieto FJ, Moignard V, Basilico S, Kinston SJ, Hannah RL, Chan MC, Nürnberg ST, Ouwehand WH, Bonzanni N, de Bruijn MF, Göttgens B.

Elife. 2016 Feb 22;5:e11469. doi: 10.7554/eLife.11469.

5.

ConBind: motif-aware cross-species alignment for the identification of functional transcription factor binding sites.

Lelieveld SH, Schütte J, Dijkstra MJ, Bawono P, Kinston SJ, Göttgens B, Heringa J, Bonzanni N.

Nucleic Acids Res. 2016 May 5;44(8):e72. doi: 10.1093/nar/gkv1518. Epub 2015 Dec 31.

6.

Hard-wired heterogeneity in blood stem cells revealed using a dynamic regulatory network model.

Bonzanni N, Garg A, Feenstra KA, Schütte J, Kinston S, Miranda-Saavedra D, Heringa J, Xenarios I, Göttgens B.

Bioinformatics. 2013 Jul 1;29(13):i80-8. doi: 10.1093/bioinformatics/btt243.

7.

The role of proteosome-mediated proteolysis in modulating potentially harmful transcription factor activity in Saccharomyces cerevisiae.

Bonzanni N, Zhang N, Oliver SG, Fisher J.

Bioinformatics. 2011 Jul 1;27(13):i283-7. doi: 10.1093/bioinformatics/btr211.

8.

Executing multicellular differentiation: quantitative predictive modelling of C.elegans vulval development.

Bonzanni N, Krepska E, Feenstra KA, Fokkink W, Kielmann T, Bal H, Heringa J.

Bioinformatics. 2009 Aug 15;25(16):2049-56. doi: 10.1093/bioinformatics/btp355. Epub 2009 Jun 10. Erratum in: Bioinformatics. 2009 Oct 1;25(19):2624.

PMID:
19515963

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