Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 112

1.

A heritable subset of the core rumen microbiome dictates dairy cow productivity and emissions.

Wallace RJ, Sasson G, Garnsworthy PC, Tapio I, Gregson E, Bani P, Huhtanen P, Bayat AR, Strozzi F, Biscarini F, Snelling TJ, Saunders N, Potterton SL, Craigon J, Minuti A, Trevisi E, Callegari ML, Cappelli FP, Cabezas-Garcia EH, Vilkki J, Pinares-Patino C, Fliegerová KO, Mrázek J, Sechovcová H, Kopečný J, Bonin A, Boyer F, Taberlet P, Kokou F, Halperin E, Williams JL, Shingfield KJ, Mizrahi I.

Sci Adv. 2019 Jul 3;5(7):eaav8391. doi: 10.1126/sciadv.aav8391. eCollection 2019 Jul.

2.

DNA metabarcoding-Need for robust experimental designs to draw sound ecological conclusions.

Zinger L, Bonin A, Alsos IG, Bálint M, Bik H, Boyer F, Chariton AA, Creer S, Coissac E, Deagle BE, De Barba M, Dickie IA, Dumbrell AJ, Ficetola GF, Fierer N, Fumagalli L, Gilbert MTP, Jarman S, Jumpponen A, Kauserud H, Orlando L, Pansu J, Pawlowski J, Tedersoo L, Thomsen PF, Willerslev E, Taberlet P.

Mol Ecol. 2019 Apr;28(8):1857-1862. doi: 10.1111/mec.15060. Epub 2019 Apr 29. No abstract available.

3.

Body size determines soil community assembly in a tropical forest.

Zinger L, Taberlet P, Schimann H, Bonin A, Boyer F, De Barba M, Gaucher P, Gielly L, Giguet-Covex C, Iribar A, Réjou-Méchain M, Rayé G, Rioux D, Schilling V, Tymen B, Viers J, Zouiten C, Thuiller W, Coissac E, Chave J.

Mol Ecol. 2019 Feb;28(3):528-543. doi: 10.1111/mec.14919. Epub 2018 Nov 22.

PMID:
30375061
4.

Diet shifts by adult flightless dung beetles Circellium bacchus, revealed using DNA metabarcoding, reflect complex life histories.

Kerley GIH, Landman M, Ficetola GF, Boyer F, Bonin A, Rioux D, Taberlet P, Coissac E.

Oecologia. 2018 Sep;188(1):107-115. doi: 10.1007/s00442-018-4203-6. Epub 2018 Jun 30.

PMID:
29961180
5.

A METHOD TO IMPROVE DOSE ASSESSMENT BY RECONSTRUCTION OF THE COMPLETE ISOTOPES INVENTORY.

Bonin A, Tsilanizara A.

Radiat Prot Dosimetry. 2017 Jun 1;175(1):46-57. doi: 10.1093/rpd/ncw266.

PMID:
27664430
6.

Spatial Representativeness of Environmental DNA Metabarcoding Signal for Fish Biodiversity Assessment in a Natural Freshwater System.

Civade R, Dejean T, Valentini A, Roset N, Raymond JC, Bonin A, Taberlet P, Pont D.

PLoS One. 2016 Jun 30;11(6):e0157366. doi: 10.1371/journal.pone.0157366. eCollection 2016.

7.

Oral Samples as Non-Invasive Proxies for Assessing the Composition of the Rumen Microbial Community.

Tapio I, Shingfield KJ, McKain N, Bonin A, Fischer D, Bayat AR, Vilkki J, Taberlet P, Snelling TJ, Wallace RJ.

PLoS One. 2016 Mar 17;11(3):e0151220. doi: 10.1371/journal.pone.0151220. eCollection 2016.

8.

A novel class of copper(II)- and zinc(II)-bound non-steroidal anti-inflammatory drugs that inhibits acute inflammation in vivo.

Puranik R, Bao S, Bonin AM, Kaur R, Weder JE, Casbolt L, Hambley TW, Lay PA, Barter PJ, Rye KA.

Cell Biosci. 2016 Feb 6;6:9. doi: 10.1186/s13578-016-0076-8. eCollection 2016.

9.

The genetic architecture of a complex trait: Resistance to multiple toxins produced by Bacillus thuringiensis israelensis in the dengue and yellow fever vector, the mosquito Aedes aegypti.

Bonin A, Paris M, Frérot H, Bianco E, Tetreau G, Després L.

Infect Genet Evol. 2015 Oct;35:204-13. doi: 10.1016/j.meegid.2015.07.034. Epub 2015 Aug 1.

PMID:
26238211
10.

obitools: a unix-inspired software package for DNA metabarcoding.

Boyer F, Mercier C, Bonin A, Le Bras Y, Taberlet P, Coissac E.

Mol Ecol Resour. 2016 Jan;16(1):176-82. doi: 10.1111/1755-0998.12428. Epub 2015 May 26.

PMID:
25959493
11.

Chemical and biological insecticides select distinct gene expression patterns in Aedes aegypti mosquito.

Després L, Stalinski R, Faucon F, Navratil V, Viari A, Paris M, Tetreau G, Poupardin R, Riaz MA, Bonin A, Reynaud S, David JP.

Biol Lett. 2014 Dec;10(12):20140716. doi: 10.1098/rsbl.2014.0716.

12.

Gene expression patterns and sequence polymorphisms associated with mosquito resistance to Bacillus thuringiensis israelensis toxins.

Després L, Stalinski R, Tetreau G, Paris M, Bonin A, Navratil V, Reynaud S, David JP.

BMC Genomics. 2014 Oct 23;15:926. doi: 10.1186/1471-2164-15-926.

13.

Replication levels, false presences and the estimation of the presence/absence from eDNA metabarcoding data.

Ficetola GF, Pansu J, Bonin A, Coissac E, Giguet-Covex C, De Barba M, Gielly L, Lopes CM, Boyer F, Pompanon F, Rayé G, Taberlet P.

Mol Ecol Resour. 2015 May;15(3):543-56. doi: 10.1111/1755-0998.12338. Epub 2014 Nov 10.

PMID:
25327646
14.

Impaired liver function in Xenopus tropicalis exposed to benzo[a]pyrene: transcriptomic and metabolic evidence.

Regnault C, Worms IA, Oger-Desfeux C, MelodeLima C, Veyrenc S, Bayle ML, Combourieu B, Bonin A, Renaud J, Raveton M, Reynaud S.

BMC Genomics. 2014 Aug 8;15:666. doi: 10.1186/1471-2164-15-666.

15.

A model integration approach linking signalling and gene-regulatory logic with kinetic metabolic models.

Ryll A, Bucher J, Bonin A, Bongard S, Gonçalves E, Saez-Rodriguez J, Niklas J, Klamt S.

Biosystems. 2014 Oct;124:26-38. doi: 10.1016/j.biosystems.2014.07.002. Epub 2014 Jul 23.

PMID:
25063553
16.

Comparative analysis of response to selection with three insecticides in the dengue mosquito Aedes aegypti using mRNA sequencing.

David JP, Faucon F, Chandor-Proust A, Poupardin R, Riaz MA, Bonin A, Navratil V, Reynaud S.

BMC Genomics. 2014 Mar 5;15:174. doi: 10.1186/1471-2164-15-174.

17.

Effect of DNA extraction and sample preservation method on rumen bacterial population.

Fliegerova K, Tapio I, Bonin A, Mrazek J, Callegari ML, Bani P, Bayat A, Vilkki J, Kopečný J, Shingfield KJ, Boyer F, Coissac E, Taberlet P, Wallace RJ.

Anaerobe. 2014 Oct;29:80-4. doi: 10.1016/j.anaerobe.2013.09.015. Epub 2013 Oct 12.

PMID:
24125910
18.

A road map for molecular ecology.

Andrew RL, Bernatchez L, Bonin A, Buerkle CA, Carstens BC, Emerson BC, Garant D, Giraud T, Kane NC, Rogers SM, Slate J, Smith H, Sork VL, Stone GN, Vines TH, Waits L, Widmer A, Rieseberg LH.

Mol Ecol. 2013 May;22(10):2605-26. doi: 10.1111/mec.12319. Review.

PMID:
23611646
19.

Allele identification for transcriptome-based population genomics in the invasive plant Centaurea solstitialis.

Dlugosch KM, Lai Z, Bonin A, Hierro J, Rieseberg LH.

G3 (Bethesda). 2013 Feb;3(2):359-67. doi: 10.1534/g3.112.003871. Epub 2013 Feb 1.

20.

Central energy metabolism remains robust in acute steatotic hepatocytes challenged by a high free fatty acid load.

Niklas J, Bonin A, Mangin S, Bucher J, Kopacz S, Matz-Soja M, Thiel C, Gebhardt R, Hofmann U, Mauch K.

BMB Rep. 2012 Jul;45(7):396-401.

21.

Allele identification in assembled genomic sequence datasets.

Dlugosch KM, Bonin A.

Methods Mol Biol. 2012;888:197-211. doi: 10.1007/978-1-61779-870-2_12.

PMID:
22665283
22.

Re: Clinical guidelines and payer policies on fusion for the treatment of chronic low back pain.

Bonin A, Wu L.

Spine (Phila Pa 1976). 2012 Jun 1;37(13):1185. doi: 10.1097/BRS.0b013e3182498f55. No abstract available.

PMID:
22252380
23.

Conserving adaptive genetic diversity in dynamic landscapes.

Ficetola GF, Bonin AL.

Mol Ecol. 2011 Apr;20(8):1569-71.

PMID:
21612020
24.

Steric effects on the direct mutagenicity of N-acyloxy-N-alkoxyamides-probes for drug-DNA interactions.

Glover SA, Schumacher RR, Bonin AM, Fransson LE.

Mutat Res. 2011 May 18;722(1):32-8. doi: 10.1016/j.mrgentox.2011.02.007. Epub 2011 Feb 25.

PMID:
21356327
25.

Effective population size is positively correlated with levels of adaptive divergence among annual sunflowers.

Strasburg JL, Kane NC, Raduski AR, Bonin A, Michelmore R, Rieseberg LH.

Mol Biol Evol. 2011 May;28(5):1569-80. doi: 10.1093/molbev/msq270. Epub 2010 Oct 15.

26.

Perspectives on the use of landscape genetics to detect genetic adaptive variation in the field.

Manel S, Joost S, Epperson BK, Holderegger R, Storfer A, Rosenberg MS, Scribner KT, Bonin A, Fortin MJ.

Mol Ecol. 2010 Sep;19(17):3760-72. doi: 10.1111/j.1365-294X.2010.04717.x. Epub 2010 Aug 13.

PMID:
20723056
27.

Inhibition of experimental colorectal cancer and reduction in renal and gastrointestinal toxicities by copper-indomethacin in rats.

Bonin AM, Yáñez JA, Fukuda C, Teng XW, Dillon CT, Hambley TW, Lay PA, Davies NM.

Cancer Chemother Pharmacol. 2010 Sep;66(4):755-64. doi: 10.1007/s00280-009-1220-5. Epub 2009 Dec 25.

PMID:
20035423
28.

Genome scan in the mosquito Aedes rusticus: population structure and detection of positive selection after insecticide treatment.

Paris M, Boyer S, Bonin A, Collado A, David JP, Despres L.

Mol Ecol. 2010 Jan;19(2):325-37. doi: 10.1111/j.1365-294X.2009.04437.x. Epub 2009 Dec 14.

PMID:
20015143
29.

Candidate genes revealed by a genome scan for mosquito resistance to a bacterial insecticide: sequence and gene expression variations.

Bonin A, Paris M, Tetreau G, David JP, Després L.

BMC Genomics. 2009 Nov 21;10:551. doi: 10.1186/1471-2164-10-551.

30.

Contrasting nuclear and cytoplasmic exchanges between phylogenetically distant oak species (Quercus suber L. and Q. ilex L.) in Southern France: inferring crosses and dynamics.

Mir C, Jarne P, Sarda V, Bonin A, Lumaret R.

Plant Biol (Stuttg). 2009 Mar;11(2):213-26. doi: 10.1111/j.1438-8677.2008.00106.x.

PMID:
19228328
31.

A MITE-based genotyping method to reveal hundreds of DNA polymorphisms in an animal genome after a few generations of artificial selection.

Bonin A, Paris M, Després L, Tetreau G, David JP, Kilian A.

BMC Genomics. 2008 Oct 6;9:459. doi: 10.1186/1471-2164-9-459.

32.

Spatial analysis method (sam): a software tool combining molecular and environmental data to identify candidate loci for selection.

Joost S, Kalbermatten M, Bonin A.

Mol Ecol Resour. 2008 Sep;8(5):957-60. doi: 10.1111/j.1755-0998.2008.02162.x. Epub 2008 Jun 28.

PMID:
21585940
33.

Population genomics: a new generation of genome scans to bridge the gap with functional genomics.

Bonin A.

Mol Ecol. 2008 Aug;17(16):3583-4. doi: 10.1111/j.1365-294X.2008.03854.x. Epub 2008 Jul 3.

PMID:
18662224
34.

Population genetics reveals origin and number of founders in a biological invasion.

Ficetola GF, Bonin A, Miaud C.

Mol Ecol. 2008 Feb;17(3):773-82. doi: 10.1111/j.1365-294X.2007.03622.x. Epub 2008 Jan 8.

PMID:
18194168
35.

A spatial analysis method (SAM) to detect candidate loci for selection: towards a landscape genomics approach to adaptation.

Joost S, Bonin A, Bruford MW, Després L, Conord C, Erhardt G, Taberlet P.

Mol Ecol. 2007 Sep;16(18):3955-69.

PMID:
17850556
36.
37.

Population adaptive index: a new method to help measure intraspecific genetic diversity and prioritize populations for conservation.

Bonin A, Nicole F, Pompanon F, Miaud C, Taberlet P.

Conserv Biol. 2007 Jun;21(3):697-708.

PMID:
17531048
38.

Diversity of Archaea in marine sediments from Skan Bay, Alaska, including cultivated methanogens, and description of Methanogenium boonei sp. nov.

Kendall MM, Wardlaw GD, Tang CF, Bonin AS, Liu Y, Valentine DL.

Appl Environ Microbiol. 2007 Jan;73(2):407-14. Epub 2006 Nov 22.

39.

Transgenic expression of a CD83-immunoglobulin fusion protein impairs the development of immune-competent CD4-positive T cells.

Lüthje K, Cramer SO, Ehrlich S, Veit A, Steeg C, Fleischer B, Bonin Av, Breloer M.

Eur J Immunol. 2006 Aug;36(8):2035-45.

40.

The role of steric effects in the direct mutagenicity of N-acyloxy-N-alkoxyamides.

Andrews LE, Bonin AM, Fransson LE, Gillson AM, Glover SA.

Mutat Res. 2006 Jun 16;605(1-2):51-62. Epub 2006 May 15.

PMID:
16698311
41.

Explorative genome scan to detect candidate loci for adaptation along a gradient of altitude in the common frog (Rana temporaria).

Bonin A, Taberlet P, Miaud C, Pompanon F.

Mol Biol Evol. 2006 Apr;23(4):773-83. Epub 2006 Jan 5.

PMID:
16396915
42.

Genotyping errors: causes, consequences and solutions.

Pompanon F, Bonin A, Bellemain E, Taberlet P.

Nat Rev Genet. 2005 Nov;6(11):847-59. Review.

PMID:
16304600
43.

Use of amplified fragment length polymorphism (AFLP) markers in surveys of vertebrate diversity.

Bonin A, Pompanon F, Taberlet P.

Methods Enzymol. 2005;395:145-61.

PMID:
15865966
44.

Nuclear magnetic resonance analysis of indomethacin-induced gastric ulcers.

Ramadan S, Bonin AM, Kennedy BJ, Hambley TW, Lay PA.

Chem Res Toxicol. 2005 Feb;18(2):123-8.

PMID:
15720115
45.

How to track and assess genotyping errors in population genetics studies.

Bonin A, Bellemain E, Bronken Eidesen P, Pompanon F, Brochmann C, Taberlet P.

Mol Ecol. 2004 Nov;13(11):3261-73.

PMID:
15487987
46.

Mutagenicity and DNA damage studies of N-acyloxy-N-alkoxyamides--the role of electrophilic nitrogen.

Banks TM, Bonin AM, Glover SA, Prakash AS.

Org Biomol Chem. 2003 Jul 7;1(13):2238-46.

PMID:
12945693
47.

Mutagenicity of electrophilic N-acyloxy-N-alkoxyamides.

Bonin AM, Banks TM, Campbell JJ, Glover SA, Hammond GP, Prakash AS, Rowbottom CA.

Mutat Res. 2001 Jul 25;494(1-2):115-34.

PMID:
11423351
48.

Isolation, microinjection, and transfer of mouse blastocysts.

Bonin A, Reid SW, Tessarollo L.

Methods Mol Biol. 2001;158:121-34. Review. No abstract available.

PMID:
11236653
49.

Permeability, cytotoxicity, and genotoxicity of Cr(III) complexes and some Cr(V) analogues in V79 Chinese hamster lung cells.

Dillon CT, Lay PA, Bonin AM, Cholewa M, Legge GJ.

Chem Res Toxicol. 2000 Aug;13(8):742-8.

PMID:
10956062
50.

Supplemental Content

Support Center