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Items: 1 to 50 of 67

1.

Multilocus sequence typing of Cryptococcus neoformans var. grubii from Laos in a regional and global context.

Thanh LT, Phan TH, Rattanavong S, Nguyen TM, Duong AV, Dacon C, Hoang TN, Nguyen LPH, Tran CTH, Davong V, Nguyen CVV, Thwaites GE, Boni MF, Dance D, Ashton PM, Day JN.

Med Mycol. 2018 Oct 19. doi: 10.1093/mmy/myy105. [Epub ahead of print]

PMID:
30339200
2.

Modeling tuberculosis dynamics with the presence of hyper-susceptible individuals for Ho Chi Minh City from 1996 to 2015.

Vinh DN, Ha DTM, Hanh NT, Thwaites G, Boni MF, Clapham HE, Thuong NTT.

BMC Infect Dis. 2018 Oct 1;18(1):494. doi: 10.1186/s12879-018-3383-3.

3.

The Estimates of the Health and Economic Burden of Dengue in Vietnam.

Hung TM, Clapham HE, Bettis AA, Cuong HQ, Thwaites GE, Wills BA, Boni MF, Turner HC.

Trends Parasitol. 2018 Oct;34(10):904-918. doi: 10.1016/j.pt.2018.07.007. Epub 2018 Aug 9. Review.

4.

Nonannual seasonality of influenza-like illness in a tropical urban setting.

Lam HM, Wesolowski A, Hung NT, Nguyen TD, Nhat NTD, Todd S, Vinh DN, Vy NHT, Thao TTN, Thanh NTL, Tin PT, Minh NNQ, Bryant JE, Buckee CO, Ngoc TV, Chau NVV, Thwaites GE, Farrar J, Tam DTH, Vinh H, Boni MF.

Influenza Other Respir Viruses. 2018 Nov;12(6):742-754. doi: 10.1111/irv.12595. Epub 2018 Aug 21.

5.

Projected costs associated with school-based screening to inform deployment of Dengvaxia: Vietnam as a case study.

Turner HC, Wills BA, Rahman M, Quoc Cuong H, Thwaites GE, Boni MF, Clapham HE.

Trans R Soc Trop Med Hyg. 2018 Aug 1;112(8):369-377. doi: 10.1093/trstmh/try057.

6.

The decline of malaria in Vietnam, 1991-2014.

Goldlust SM, Thuan PD, Giang DDH, Thang ND, Thwaites GE, Farrar J, Thanh NV, Nguyen TD, Grenfell BT, Boni MF, Hien TT.

Malar J. 2018 Jun 7;17(1):226. doi: 10.1186/s12936-018-2372-8.

7.

Primary care influenza-like illness surveillance in Ho Chi Minh City, Vietnam 2013-2015.

Todd S, Huong NTC, Thanh NTL, Vy NHT, Hung NT, Thao TTN, Phuong HT, van Doorn R, Hang VTT, Chau NVV, Read JM, Lalloo DG, Boni MF.

Influenza Other Respir Viruses. 2018 Jun 2. doi: 10.1111/irv.12574. [Epub ahead of print]

8.

Evidence of previous but not current transmission of chikungunya virus in southern and central Vietnam: Results from a systematic review and a seroprevalence study in four locations.

Quan TM, Phuong HT, Vy NHT, Thanh NTL, Lien NTN, Hong TTK, Dung PN, Chau NVV, Boni MF, Clapham HE.

PLoS Negl Trop Dis. 2018 Feb 9;12(2):e0006246. doi: 10.1371/journal.pntd.0006246. eCollection 2018 Feb. Review.

9.

Towards malaria elimination in Savannakhet, Lao PDR: mathematical modelling driven strategy design.

Tun STT, von Seidlein L, Pongvongsa T, Mayxay M, Saralamba S, Kyaw SS, Chanthavilay P, Celhay O, Nguyen TD, Tran TN, Parker DM, Boni MF, Dondorp AM, White LJ.

Malar J. 2017 Nov 28;16(1):483. doi: 10.1186/s12936-017-2130-3.

10.

Improved Algorithmic Complexity for the 3SEQ Recombination Detection Algorithm.

Lam HM, Ratmann O, Boni MF.

Mol Biol Evol. 2018 Jan 1;35(1):247-251. doi: 10.1093/molbev/msx263.

11.

A8 The epidemiology and evolution of influenza A/H1N1 and A/H3N2 virus from 2010 to 2015, in Ho Chi Minh City, Vietnam.

Vy NHT, Phuong HT, Vinh DN, Boni MF.

Virus Evol. 2017 Mar 5;3(Suppl 1). pii: vew036.007. doi: 10.1093/ve/vew036.007. eCollection 2017 Mar. No abstract available.

12.

No Evidence of On-farm Circulation of Avian Influenza H5 Subtype in Ca Mau Province, Southern Vietnam, March 2016 - January 2017.

Thanh NTL, Vy NHT, Xuyen HTA, Phuong HT, Tuyet PN, Huy NT, Nguyen-Van-Yen B, Lam HM, Boni MF.

PLoS Curr. 2017 May 5;9. pii: ecurrents.outbreaks.c816d7333370d68f8a0da33f69168986. doi: 10.1371/currents.outbreaks.c816d7333370d68f8a0da33f69168986.

13.

Structure of general-population antibody titer distributions to influenza A virus.

Nhat NTD, Todd S, de Bruin E, Thao TTN, Vy NHT, Quan TM, Vinh DN, van Beek J, Anh PH, Lam HM, Hung NT, Thanh NTL, Huy HLA, Ha VTH, Baker S, Thwaites GE, Lien NTN, Hong TTK, Farrar J, Simmons CP, Chau NVV, Koopmans M, Boni MF.

Sci Rep. 2017 Jul 20;7(1):6060. doi: 10.1038/s41598-017-06177-0.

14.

Comparative genomics of Cryptococcus neoformans var. grubii associated with meningitis in HIV infected and uninfected patients in Vietnam.

Day JN, Qihui S, Thanh LT, Trieu PH, Van AD, Thu NH, Chau TTH, Lan NPH, Chau NVV, Ashton PM, Thwaites GE, Boni MF, Wolbers M, Nagarajan N, Tan PBO, Baker S.

PLoS Negl Trop Dis. 2017 Jun 14;11(6):e0005628. doi: 10.1371/journal.pntd.0005628. eCollection 2017 Jun.

15.

Hepatitis E in southern Vietnam: Seroepidemiology in humans and molecular epidemiology in pigs.

Berto A, Pham HA, Thao TTN, Vy NHT, Caddy SL, Hiraide R, Tue NT, Goodfellow I, Carrique-Mas JJ, Thwaites GE, Baker S, Boni MF; VIZIONS consortium.

Zoonoses Public Health. 2018 Feb;65(1):43-50. doi: 10.1111/zph.12364. Epub 2017 Jun 9.

PMID:
28598034
16.

K13 Propeller Mutations in Plasmodium falciparum Populations in Regions of Malaria Endemicity in Vietnam from 2009 to 2016.

Thuy-Nhien N, Tuyen NK, Tong NT, Vy NT, Thanh NV, Van HT, Huong-Thu P, Quang HH, Boni MF, Dolecek C, Farrar J, Thwaites GE, Miotto O, White NJ, Hien TT.

Antimicrob Agents Chemother. 2017 Mar 24;61(4). pii: e01578-16. doi: 10.1128/AAC.01578-16. Print 2017 Apr.

17.

Tetanus in Southern Vietnam: Current Situation.

Thuy DB, Campbell JI, Thanh TT, Thuy CT, Loan HT, Hao NV, Minh YL, Tan LV, Boni MF, Thwaites CL.

Am J Trop Med Hyg. 2017 Jan 11;96(1):93-96. doi: 10.4269/ajtmh.16-0470. Epub 2016 Nov 7.

18.

Genomic analysis of local variation and recent evolution in Plasmodium vivax.

Pearson RD, Amato R, Auburn S, Miotto O, Almagro-Garcia J, Amaratunga C, Suon S, Mao S, Noviyanti R, Trimarsanto H, Marfurt J, Anstey NM, William T, Boni MF, Dolecek C, Hien TT, White NJ, Michon P, Siba P, Tavul L, Harrison G, Barry A, Mueller I, Ferreira MU, Karunaweera N, Randrianarivelojosia M, Gao Q, Hubbart C, Hart L, Jeffery B, Drury E, Mead D, Kekre M, Campino S, Manske M, Cornelius VJ, MacInnis B, Rockett KA, Miles A, Rayner JC, Fairhurst RM, Nosten F, Price RN, Kwiatkowski DP.

Nat Genet. 2016 Aug;48(8):959-964. doi: 10.1038/ng.3599. Epub 2016 Jun 27.

19.

Safety and Upper Respiratory Pharmacokinetics of the Hemagglutinin Stalk-Binding Antibody VIS410 Support Treatment and Prophylaxis Based on Population Modeling of Seasonal Influenza A Outbreaks.

Wollacott AM, Boni MF, Szretter KJ, Sloan SE, Yousofshahi M, Viswanathan K, Bedard S, Hay CA, Smith PF, Shriver Z, Trevejo JM.

EBioMedicine. 2016 Feb 26;5:147-55. doi: 10.1016/j.ebiom.2016.02.021. eCollection 2016 Mar.

20.

The Community As the Patient in Malaria-Endemic Areas: Preempting Drug Resistance with Multiple First-Line Therapies.

Boni MF, White NJ, Baird JK.

PLoS Med. 2016 Mar 29;13(3):e1001984. doi: 10.1371/journal.pmed.1001984. eCollection 2016 Mar.

21.

Changes in heterosubtypic antibody responses during the first year of the 2009 A(H1N1) influenza pandemic.

Freidl GS, van den Ham HJ, Boni MF, de Bruin E, Koopmans MP.

Sci Rep. 2016 Feb 8;6:20385. doi: 10.1038/srep20385.

22.

Highly Pathogenic Avian Influenza Virus A/H5N1 Infection in Vaccinated Meat Duck Flocks in the Mekong Delta of Vietnam.

Cuong NV, Truc VN, Nhung NT, Thanh TT, Chieu TT, Hieu TQ, Men NT, Mai HH, Chi HT, Boni MF, van Doorn HR, Thwaites GE, Carrique-Mas JJ, Hoa NT.

Transbound Emerg Dis. 2016 Apr;63(2):127-35. doi: 10.1111/tbed.12470. Epub 2016 Jan 8.

23.

Seasonality of absolute humidity explains seasonality of influenza-like illness in Vietnam.

Thai PQ, Choisy M, Duong TN, Thiem VD, Yen NT, Hien NT, Weiss DJ, Boni MF, Horby P.

Epidemics. 2015 Dec;13:65-73. doi: 10.1016/j.epidem.2015.06.002. Epub 2015 Aug 28.

24.

Optimum population-level use of artemisinin combination therapies: a modelling study.

Nguyen TD, Olliaro P, Dondorp AM, Baird JK, Lam HM, Farrar J, Thwaites GE, White NJ, Boni MF.

Lancet Glob Health. 2015 Dec;3(12):e758-66. doi: 10.1016/S2214-109X(15)00162-X. Epub 2015 Nov 4.

25.

The Vietnam Initiative on Zoonotic Infections (VIZIONS): A Strategic Approach to Studying Emerging Zoonotic Infectious Diseases.

Rabaa MA, Tue NT, Phuc TM, Carrique-Mas J, Saylors K, Cotten M, Bryant JE, Nghia HD, Cuong NV, Pham HA, Berto A, Phat VV, Dung TT, Bao LH, Hoa NT, Wertheim H, Nadjm B, Monagin C, van Doorn HR, Rahman M, Tra MP, Campbell JI, Boni MF, Tam PT, van der Hoek L, Simmonds P, Rambaut A, Toan TK, Van Vinh Chau N, Hien TT, Wolfe N, Farrar JJ, Thwaites G, Kellam P, Woolhouse ME, Baker S.

Ecohealth. 2015 Dec;12(4):726-35. doi: 10.1007/s10393-015-1061-0. Epub 2015 Sep 24. Review.

26.

Impact of human mobility on the emergence of dengue epidemics in Pakistan.

Wesolowski A, Qureshi T, Boni MF, Sundsøy PR, Johansson MA, Rasheed SB, Engø-Monsen K, Buckee CO.

Proc Natl Acad Sci U S A. 2015 Sep 22;112(38):11887-92. doi: 10.1073/pnas.1504964112. Epub 2015 Sep 8.

27.

Statistical identifiability and sample size calculations for serial seroepidemiology.

Vinh DN, Boni MF.

Epidemics. 2015 Sep;12:30-9. doi: 10.1016/j.epidem.2015.02.005. Epub 2015 Mar 3.

28.

Evaluating clinical trial designs for investigational treatments of Ebola virus disease.

Cooper BS, Boni MF, Pan-ngum W, Day NP, Horby PW, Olliaro P, Lang T, White NJ, White LJ, Whitehead J.

PLoS Med. 2015 Apr 14;12(4):e1001815. doi: 10.1371/journal.pmed.1001815. eCollection 2015 Apr.

29.

Measuring the association between artemisinin-based case management and malaria incidence in southern Vietnam, 1991-2010.

Peak CM, Thuan PD, Britton A, Nguyen TD, Wolbers M, Thanh NV, Buckee CO, Boni MF.

Am J Trop Med Hyg. 2015 Apr;92(4):811-7. doi: 10.4269/ajtmh.14-0461. Epub 2015 Feb 9.

30.

The emergence and evolution of the novel epidemic norovirus GII.4 variant Sydney 2012.

Eden JS, Hewitt J, Lim KL, Boni MF, Merif J, Greening G, Ratcliff RM, Holmes EC, Tanaka MM, Rawlinson WD, White PA.

Virology. 2014 Feb;450-451:106-13. doi: 10.1016/j.virol.2013.12.005. Epub 2013 Dec 25.

31.

Reply to Pawar et al.

Todd S, De Bruin E, Nhat NT, Koopmans M, Boni MF.

J Infect Dis. 2014 Jul 1;210(1):161-3. Epub 2014 Jan 22. No abstract available.

32.

Fitness benefits in fluoroquinolone-resistant Salmonella Typhi in the absence of antimicrobial pressure.

Baker S, Duy PT, Nga TV, Dung TT, Phat VV, Chau TT, Turner AK, Farrar J, Boni MF.

Elife. 2013 Dec 10;2:e01229. doi: 10.7554/eLife.01229.

33.

Migration and persistence of human influenza A viruses, Vietnam, 2001-2008.

Le MQ, Lam HM, Cuong VD, Lam TT, Halpin RA, Wentworth DE, Hien NT, Thanh le T, Phuong HV, Horby P, Boni MF.

Emerg Infect Dis. 2013 Nov;19(11):1756-65. doi: 10.3201/eid1911.130349.

34.

Economic epidemiology of avian influenza on smallholder poultry farms.

Boni MF, Galvani AP, Wickelgren AL, Malani A.

Theor Popul Biol. 2013 Dec;90:135-44. doi: 10.1016/j.tpb.2013.10.001. Epub 2013 Oct 23.

35.

Reconciling phylodynamics with epidemiology: the case of dengue virus in southern Vietnam.

Rasmussen DA, Boni MF, Koelle K.

Mol Biol Evol. 2014 Feb;31(2):258-71. doi: 10.1093/molbev/mst203. Epub 2013 Oct 22.

36.

Impact of treatment heterogeneity on drug resistance and supply chain costs.

Spiliotopoulou E, Boni MF, Yadav P.

Socioecon Plann Sci. 2013 Sep;47(3):158-171.

37.

Identification of a new cyclovirus in cerebrospinal fluid of patients with acute central nervous system infections.

Tan le V, van Doorn HR, Nghia HD, Chau TT, Tu le TP, de Vries M, Canuti M, Deijs M, Jebbink MF, Baker S, Bryant JE, Tham NT, BKrong NT, Boni MF, Loi TQ, Phuong le T, Verhoeven JT, Crusat M, Jeeninga RE, Schultsz C, Chau NV, Hien TT, van der Hoek L, Farrar J, de Jong MD.

MBio. 2013 Jun 18;4(3):e00231-13. doi: 10.1128/mBio.00231-13.

38.

Spatiotemporal dynamics of dengue epidemics, southern Vietnam.

Cuong HQ, Vu NT, Cazelles B, Boni MF, Thai KT, Rabaa MA, Quang LC, Simmons CP, Huu TN, Anders KL.

Emerg Infect Dis. 2013 Jun;19(6):945-53. doi: 10.3201/eid1906.121323.

39.

Population-level antibody estimates to novel influenza A/H7N9.

Boni MF, Chau NV, Dong N, Todd S, Nhat NT, de Bruin E, van Beek J, Hien NT, Simmons CP, Farrar J, Koopmans M.

J Infect Dis. 2013 Aug 15;208(4):554-8. doi: 10.1093/infdis/jit224. Epub 2013 May 17.

40.

Multiple populations of artemisinin-resistant Plasmodium falciparum in Cambodia.

Miotto O, Almagro-Garcia J, Manske M, Macinnis B, Campino S, Rockett KA, Amaratunga C, Lim P, Suon S, Sreng S, Anderson JM, Duong S, Nguon C, Chuor CM, Saunders D, Se Y, Lon C, Fukuda MM, Amenga-Etego L, Hodgson AV, Asoala V, Imwong M, Takala-Harrison S, Nosten F, Su XZ, Ringwald P, Ariey F, Dolecek C, Hien TT, Boni MF, Thai CQ, Amambua-Ngwa A, Conway DJ, Djimdé AA, Doumbo OK, Zongo I, Ouedraogo JB, Alcock D, Drury E, Auburn S, Koch O, Sanders M, Hubbart C, Maslen G, Ruano-Rubio V, Jyothi D, Miles A, O'Brien J, Gamble C, Oyola SO, Rayner JC, Newbold CI, Berriman M, Spencer CC, McVean G, Day NP, White NJ, Bethell D, Dondorp AM, Plowe CV, Fairhurst RM, Kwiatkowski DP.

Nat Genet. 2013 Jun;45(6):648-55. doi: 10.1038/ng.2624. Epub 2013 Apr 28.

41.

The dynamics of GII.4 Norovirus in Ho Chi Minh City, Vietnam.

Tra My PV, Lam HM, Thompson CN, Phuc HL, Tuyet PT, Vinh H, Hoang NV, Minh P, Vinh NT, Thuy CT, Nga TT, Hau NT, Chinh NT, Thuong TC, Tuan HM, Campbell JI, Clements AC, Farrar J, Boni MF, Baker S.

Infect Genet Evol. 2013 Aug;18:335-43. doi: 10.1016/j.meegid.2013.04.014. Epub 2013 Apr 21.

42.

Recombination within the pandemic norovirus GII.4 lineage.

Eden JS, Tanaka MM, Boni MF, Rawlinson WD, White PA.

J Virol. 2013 Jun;87(11):6270-82. doi: 10.1128/JVI.03464-12. Epub 2013 Mar 27.

43.

Virulence attenuation during an influenza A/H5N1 pandemic.

Boni MF, Nguyen TD, de Jong MD, van Doorn HR.

Philos Trans R Soc Lond B Biol Sci. 2013 Feb 4;368(1614):20120207. doi: 10.1098/rstb.2012.0207. Print 2013 Mar 19.

44.

In vivo susceptibility of Plasmodium falciparum to artesunate in Binh Phuoc Province, Vietnam.

Hien TT, Thuy-Nhien NT, Phu NH, Boni MF, Thanh NV, Nha-Ca NT, Thai le H, Thai CQ, Toi PV, Thuan PD, Long le T, Dong le T, Merson L, Dolecek C, Stepniewska K, Ringwald P, White NJ, Farrar J, Wolbers M.

Malar J. 2012 Oct 26;11:355. doi: 10.1186/1475-2875-11-355.

45.

Combined high-resolution genotyping and geospatial analysis reveals modes of endemic urban typhoid fever transmission.

Baker S, Holt KE, Clements AC, Karkey A, Arjyal A, Boni MF, Dongol S, Hammond N, Koirala S, Duy PT, Nga TV, Campbell JI, Dolecek C, Basnyat B, Dougan G, Farrar JJ.

Open Biol. 2011 Oct;1(2):110008. doi: 10.1098/rsob.110008.

46.

Assessing the potential of a candidate dengue vaccine with mathematical modeling.

WHO-VMI Dengue Vaccine Modeling Group, Beatty M, Boni MF, Brown S, Buathong R, Burke D, Coudeville L, Cummings DA, Edelman R, Farrar J, Focks DA, Gomes MG, Guignard A, Halstead S, Hombach J, Knerer G, Koelle K, Lam FC, Lang J, Longini I, Medlock J, Namgyal P, Powell M, Recker M, Rohani P, Standaert B, Struchiner C, Teyssou R, Wearing H.

PLoS Negl Trop Dis. 2012;6(3):e1450. doi: 10.1371/journal.pntd.0001450. Epub 2012 Mar 27. No abstract available.

47.

No evidence for intra-segment recombination of 2009 H1N1 influenza virus in swine.

Boni MF, Smith GJ, Holmes EC, Vijaykrishna D.

Gene. 2012 Feb 25;494(2):242-5. doi: 10.1016/j.gene.2011.10.041. Epub 2011 Oct 30.

48.

Recent avian influenza virus A/H5N1 evolution in vaccinated and unvaccinated poultry from farms in Southern Vietnam, January-March 2010.

Long NT, Thanh TT, van Doorn HR, Vu PP, Dung PT, Dung TT, Tien TN, Thao DT, Hung P, Quang NV, Hoa NT, Bryant JE, Boni MF.

Transbound Emerg Dis. 2011 Dec;58(6):537-43. doi: 10.1111/j.1865-1682.2011.01229.x. Epub 2011 May 18.

49.

Most cases of cryptococcal meningitis in HIV-uninfected patients in Vietnam are due to a distinct amplified fragment length polymorphism-defined cluster of Cryptococcus neoformans var. grubii VN1.

Day JN, Hoang TN, Duong AV, Hong CT, Diep PT, Campbell JI, Sieu TP, Hien TT, Bui T, Boni MF, Lalloo DG, Carter D, Baker S, Farrar JJ.

J Clin Microbiol. 2011 Feb;49(2):658-64. doi: 10.1128/JCM.01985-10. Epub 2010 Dec 15.

50.

The burden and characteristics of enteric fever at a healthcare facility in a densely populated area of Kathmandu.

Karkey A, Arjyal A, Anders KL, Boni MF, Dongol S, Koirala S, My PV, Nga TV, Clements AC, Holt KE, Duy PT, Day JN, Campbell JI, Dougan G, Dolecek C, Farrar J, Basnyat B, Baker S.

PLoS One. 2010 Nov 15;5(11):e13988. doi: 10.1371/journal.pone.0013988.

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