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Items: 11

1.

Reproduction study using public data of: Development and validation of a deep learning algorithm for detection of diabetic retinopathy in retinal fundus photographs.

Voets M, Møllersen K, Bongo LA.

PLoS One. 2019 Jun 6;14(6):e0217541. doi: 10.1371/journal.pone.0217541. eCollection 2019.

2.

Norwegian e-Infrastructure for Life Sciences (NeLS).

Tekle KM, Gundersen S, Klepper K, Bongo LA, Raknes IA, Li X, Zhang W, Andreetta C, Mulugeta TD, Kalaš M, Rye MB, Hjerde E, Antony Samy JK, Fornous G, Azab A, Våge DI, Hovig E, Willassen NP, Drabløs F, Nygård S, Petersen K, Jonassen I.

F1000Res. 2018 Jun 29;7. pii: ELIXIR-968. doi: 10.12688/f1000research.15119.1. eCollection 2018. Review.

3.

META-pipe Authorization service.

Raknes IA, Bongo LA.

Version 2. F1000Res. 2018 Jan 9 [revised 2018 Jan 1];7. pii: ELIXIR-32. doi: 10.12688/f1000research.13256.2. eCollection 2018.

4.

META-pipe cloud setup and execution.

Agafonov A, Mattila K, Tuan CD, Tiede L, Raknes IA, Bongo LA.

Version 3. F1000Res. 2017 Nov 29 [revised 2019 Jan 1];6. pii: ELIXIR-2060. doi: 10.12688/f1000research.13204.3. eCollection 2017.

5.

Interactions between the tumor and the blood systemic response of breast cancer patients.

Dumeaux V, Fjukstad B, Fjosne HE, Frantzen JO, Holmen MM, Rodegerdts E, Schlichting E, Børresen-Dale AL, Bongo LA, Lund E, Hallett M.

PLoS Comput Biol. 2017 Sep 28;13(9):e1005680. doi: 10.1371/journal.pcbi.1005680. eCollection 2017 Sep.

6.

The metagenomic data life-cycle: standards and best practices.

Ten Hoopen P, Finn RD, Bongo LA, Corre E, Fosso B, Meyer F, Mitchell A, Pelletier E, Pesole G, Santamaria M, Willassen NP, Cochrane G.

Gigascience. 2017 Aug 1;6(8):1-11. doi: 10.1093/gigascience/gix047.

7.

ELIXIR pilot action: Marine metagenomics - towards a domain specific set of sustainable services.

Robertsen EM, Denise H, Mitchell A, Finn RD, Bongo LA, Willassen NP.

F1000Res. 2017 Jan 23;6. pii: ELIXIR-70. doi: 10.12688/f1000research.10443.1. eCollection 2017.

8.

Kvik: three-tier data exploration tools for flexible analysis of genomic data in epidemiological studies.

Fjukstad B, Standahl Olsen K, Jareid M, Lund E, Bongo LA.

Version 2. F1000Res. 2015 Mar 30 [revised 2015 Jan 1];4:81. doi: 10.12688/f1000research.6238.2. eCollection 2015.

9.

Targeted exploration and analysis of large cross-platform human transcriptomic compendia.

Zhu Q, Wong AK, Krishnan A, Aure MR, Tadych A, Zhang R, Corney DC, Greene CS, Bongo LA, Kristensen VN, Charikar M, Li K, Troyanskaya OG.

Nat Methods. 2015 Mar;12(3):211-4, 3 p following 214. doi: 10.1038/nmeth.3249. Epub 2015 Jan 12.

10.

Functional knowledge transfer for high-accuracy prediction of under-studied biological processes.

Park CY, Wong AK, Greene CS, Rowland J, Guan Y, Bongo LA, Burdine RD, Troyanskaya OG.

PLoS Comput Biol. 2013;9(3):e1002957. doi: 10.1371/journal.pcbi.1002957. Epub 2013 Mar 14.

11.

IMP: a multi-species functional genomics portal for integration, visualization and prediction of protein functions and networks.

Wong AK, Park CY, Greene CS, Bongo LA, Guan Y, Troyanskaya OG.

Nucleic Acids Res. 2012 Jul;40(Web Server issue):W484-90. doi: 10.1093/nar/gks458. Epub 2012 Jun 7.

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