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Items: 47

1.

Timing Is Everything: Impact of Naturally Occurring Staphylococcus aureus AgrC Cytoplasmic Domain Adaptive Mutations on Autoinduction.

Sloan TJ, Murray E, Yokoyama M, Massey RC, Chan WC, Bonev BB, Williams P.

J Bacteriol. 2019 Sep 20;201(20). pii: e00409-19. doi: 10.1128/JB.00409-19. Print 2019 Oct 15.

2.

Molecular recognition of lipopolysaccharide by the lantibiotic nisin.

Lanne ABM, Goode A, Prattley C, Kumari D, Drasbek MR, Williams P, Conde-Álvarez R, Moriyón I, Bonev BB.

Biochim Biophys Acta Biomembr. 2019 Jan;1861(1):83-92. doi: 10.1016/j.bbamem.2018.10.006. Epub 2018 Oct 5.

PMID:
30296414
3.

TADs are 3D structural units of higher-order chromosome organization in Drosophila.

Szabo Q, Jost D, Chang JM, Cattoni DI, Papadopoulos GL, Bonev B, Sexton T, Gurgo J, Jacquier C, Nollmann M, Bantignies F, Cavalli G.

Sci Adv. 2018 Feb 28;4(2):eaar8082. doi: 10.1126/sciadv.aar8082. eCollection 2018 Feb.

4.

To Boil an Egg: Substrate Binding Affects Critical Stability in Thermal Unfolding of Proteins.

Hussain R, Hughes CS, Jávorfi T, Siligardi G, Williams P, Bonev BB.

J Phys Chem B. 2018 Mar 1;122(8):2213-2218. doi: 10.1021/acs.jpcb.7b10643. Epub 2018 Feb 15.

PMID:
29401389
5.

Multiscale 3D Genome Rewiring during Mouse Neural Development.

Bonev B, Mendelson Cohen N, Szabo Q, Fritsch L, Papadopoulos GL, Lubling Y, Xu X, Lv X, Hugnot JP, Tanay A, Cavalli G.

Cell. 2017 Oct 19;171(3):557-572.e24. doi: 10.1016/j.cell.2017.09.043.

6.

Organization and function of the 3D genome.

Bonev B, Cavalli G.

Nat Rev Genet. 2016 Dec;17(12):772. doi: 10.1038/nrg.2016.147. Epub 2016 Oct 31. No abstract available.

PMID:
28704353
7.

The 67P/Churyumov-Gerasimenko observation campaign in support of the Rosetta mission.

Snodgrass C, A'Hearn MF, Aceituno F, Afanasiev V, Bagnulo S, Bauer J, Bergond G, Besse S, Biver N, Bodewits D, Boehnhardt H, Bonev BP, Borisov G, Carry B, Casanova V, Cochran A, Conn BC, Davidsson B, Davies JK, de León J, de Mooij E, de Val-Borro M, Delacruz M, DiSanti MA, Drew JE, Duffard R, Edberg NJT, Faggi S, Feaga L, Fitzsimmons A, Fujiwara H, Gibb EL, Gillon M, Green SF, Guijarro A, Guilbert-Lepoutre A, Gutiérrez PJ, Hadamcik E, Hainaut O, Haque S, Hedrosa R, Hines D, Hopp U, Hoyo F, Hutsemékers D, Hyland M, Ivanova O, Jehin E, Jones GH, Keane JV, Kelley MSP, Kiselev N, Kleyna J, Kluge M, Knight MM, Kokotanekova R, Koschny D, Kramer EA, López-Moreno JJ, Lacerda P, Lara LM, Lasue J, Lehto HJ, Levasseur-Regourd AC, Licandro J, Lin ZY, Lister T, Lowry SC, Mainzer A, Manfroid J, Marchant J, McKay AJ, McNeill A, Meech KJ, Micheli M, Mohammed I, Monguió M, Moreno F, Muñoz O, Mumma MJ, Nikolov P, Opitom C, Ortiz JL, Paganini L, Pajuelo M, Pozuelos FJ, Protopapa S, Pursimo T, Rajkumar B, Ramanjooloo Y, Ramos E, Ries C, Riffeser A, Rosenbush V, Rousselot P, Ryan EL, Santos-Sanz P, Schleicher DG, Schmidt M, Schulz R, Sen AK, Somero A, Sota A, Stinson A, Sunshine JM, Thompson A, Tozzi GP, Tubiana C, Villanueva GL, Wang X, Wooden DH, Yagi M, Yang B, Zaprudin B, Zegmott TJ.

Philos Trans A Math Phys Eng Sci. 2017 Jul 13;375(2097). pii: 20160249. doi: 10.1098/rsta.2016.0249.

8.

Stable Polycomb-dependent transgenerational inheritance of chromatin states in Drosophila.

Ciabrelli F, Comoglio F, Fellous S, Bonev B, Ninova M, Szabo Q, Xuéreb A, Klopp C, Aravin A, Paro R, Bantignies F, Cavalli G.

Nat Genet. 2017 Jun;49(6):876-886. doi: 10.1038/ng.3848. Epub 2017 Apr 24.

9.

Coordinate redeployment of PRC1 proteins suppresses tumor formation during Drosophila development.

Loubière V, Delest A, Thomas A, Bonev B, Schuettengruber B, Sati S, Martinez AM, Cavalli G.

Nat Genet. 2016 Nov;48(11):1436-1442. doi: 10.1038/ng.3671. Epub 2016 Sep 19.

10.

Organization and function of the 3D genome.

Bonev B, Cavalli G.

Nat Rev Genet. 2016 Oct 14;17(11):661-678. doi: 10.1038/nrg.2016.112. Review. Erratum in: Nat Rev Genet. 2016 Dec;17 (12 ):772.

PMID:
27739532
11.

NMR of Membrane Proteins: Beyond Crystals.

Rajesh S, Overduin M, Bonev BB.

Adv Exp Med Biol. 2016;922:29-42. doi: 10.1007/978-3-319-35072-1_3.

PMID:
27553233
12.

Recognition of Membrane Sterols by Polyene Antifungals Amphotericin B and Natamycin, A (13)C MAS NMR Study.

Ciesielski F, Griffin DC, Loraine J, Rittig M, Delves-Broughton J, Bonev BB.

Front Cell Dev Biol. 2016 Jun 17;4:57. doi: 10.3389/fcell.2016.00057. eCollection 2016.

13.

Docking and molecular dynamics simulations of the ternary complex nisin2:lipid II.

Mulholland S, Turpin ER, Bonev BB, Hirst JD.

Sci Rep. 2016 Feb 18;6:21185. doi: 10.1038/srep21185.

14.

First-year dental students' motivation and attitudes for choosing the dental profession.

Avramova N, Yaneva K, Bonev B.

Acta Med Acad. 2014;43(2):113-21. doi: 10.5644/ama2006-124.110.

15.

The antibacterial toxin colicin N binds to the inner core of lipopolysaccharide and close to its translocator protein.

Johnson CL, Ridley H, Marchetti R, Silipo A, Griffin DC, Crawford L, Bonev B, Molinaro A, Lakey JH.

Mol Microbiol. 2014 May;92(3):440-52. doi: 10.1111/mmi.12568. Epub 2014 Mar 28.

16.

Multiple knockout mouse models reveal lincRNAs are required for life and brain development.

Sauvageau M, Goff LA, Lodato S, Bonev B, Groff AF, Gerhardinger C, Sanchez-Gomez DB, Hacisuleyman E, Li E, Spence M, Liapis SC, Mallard W, Morse M, Swerdel MR, D'Ecclessis MF, Moore JC, Lai V, Gong G, Yancopoulos GD, Frendewey D, Kellis M, Hart RP, Valenzuela DM, Arlotta P, Rinn JL.

Elife. 2013 Dec 31;2:e01749. doi: 10.7554/eLife.01749.

17.

Structure and biosynthesis of two exopolysaccharides produced by Lactobacillus johnsonii FI9785.

Dertli E, Colquhoun IJ, Gunning AP, Bongaerts RJ, Le Gall G, Bonev BB, Mayer MJ, Narbad A.

J Biol Chem. 2013 Nov 1;288(44):31938-51. doi: 10.1074/jbc.M113.507418. Epub 2013 Sep 9.

18.

Interactions of lipopolysaccharide with lipid membranes, raft models - a solid state NMR study.

Ciesielski F, Griffin DC, Rittig M, Moriyón I, Bonev BB.

Biochim Biophys Acta. 2013 Aug;1828(8):1731-42. doi: 10.1016/j.bbamem.2013.03.029. Epub 2013 Apr 6.

19.

Methods to analyze microRNA expression and function during Xenopus development.

Bonev B, Papalopulu N.

Methods Mol Biol. 2012;917:445-59. doi: 10.1007/978-1-61779-992-1_25.

PMID:
22956103
20.

Multicolor fluorescent in situ mRNA hybridization (FISH) on whole mounts and sections.

Lea R, Bonev B, Dubaissi E, Vize PD, Papalopulu N.

Methods Mol Biol. 2012;917:431-44. doi: 10.1007/978-1-61779-992-1_24.

PMID:
22956102
21.

MicroRNA-9 Modulates Hes1 ultradian oscillations by forming a double-negative feedback loop.

Bonev B, Stanley P, Papalopulu N.

Cell Rep. 2012 Jul 26;2(1):10-8. doi: 10.1016/j.celrep.2012.05.017. Epub 2012 Jun 28.

22.

Receptor-independent interaction of bacterial lipopolysaccharide with lipid and lymphocyte membranes; the role of cholesterol.

Ciesielski F, Davis B, Rittig M, Bonev BB, O'Shea P.

PLoS One. 2012;7(6):e38677. doi: 10.1371/journal.pone.0038677. Epub 2012 Jun 7.

23.

microRNA-9 regulates axon extension and branching by targeting Map1b in mouse cortical neurons.

Dajas-Bailador F, Bonev B, Garcez P, Stanley P, Guillemot F, Papalopulu N.

Nat Neurosci. 2012 May;15(5):697-699. doi: 10.1038/nn.3082. Epub 2012 Apr 8.

PMID:
22484572
24.

Deciphering the molecular details for the binding of the prion protein to main ganglioside GM1 of neuronal membranes.

Sanghera N, Correia BE, Correia JR, Ludwig C, Agarwal S, Nakamura HK, Kuwata K, Samain E, Gill AC, Bonev BB, Pinheiro TJ.

Chem Biol. 2011 Nov 23;18(11):1422-31. doi: 10.1016/j.chembiol.2011.08.016.

25.

Genome-wide analysis of gene expression during Xenopus tropicalis tadpole tail regeneration.

Love NR, Chen Y, Bonev B, Gilchrist MJ, Fairclough L, Lea R, Mohun TJ, Paredes R, Zeef LA, Amaya E.

BMC Dev Biol. 2011 Nov 15;11:70. doi: 10.1186/1471-213X-11-70.

26.

MicroRNA-9 reveals regional diversity of neural progenitors along the anterior-posterior axis.

Bonev B, Pisco A, Papalopulu N.

Dev Cell. 2011 Jan 18;20(1):19-32. doi: 10.1016/j.devcel.2010.11.018.

27.

Heteronuclear chemical shift correlation and J-resolved MAS NMR spectroscopy of lipid membranes.

Zorin V, Ciesielski F, Griffin DC, Rittig M, Bonev BB.

Magn Reson Chem. 2010 Dec;48(12):925-34. doi: 10.1002/mrc.2690.

PMID:
20941803
28.

Stereoselective disulfide formation stabilizes the local peptide conformation in nisin mimics.

Turpin ER, Bonev BB, Hirst JD.

Biochemistry. 2010 Nov 9;49(44):9594-603. doi: 10.1021/bi101214t.

PMID:
20882989
29.

FoxG1 and TLE2 act cooperatively to regulate ventral telencephalon formation.

Roth M, Bonev B, Lindsay J, Lea R, Panagiotaki N, Houart C, Papalopulu N.

Development. 2010 May;137(9):1553-62. doi: 10.1242/dev.044909. Epub 2010 Mar 31.

30.

High-resolution J-coupled 13C MAS NMR spectroscopy of lipid membranes.

Ciesielski F, Griffin DC, Rittig M, Bonev BB.

Chem Phys Lipids. 2009 Oct;161(2):77-85. doi: 10.1016/j.chemphyslip.2009.07.001. Epub 2009 Jul 17.

PMID:
19616526
31.

Strong release of methane on Mars in northern summer 2003.

Mumma MJ, Villanueva GL, Novak RE, Hewagama T, Bonev BP, Disanti MA, Mandell AM, Smith MD.

Science. 2009 Feb 20;323(5917):1041-5. doi: 10.1126/science.1165243. Epub 2009 Jan 15.

32.

Principles of assessing bacterial susceptibility to antibiotics using the agar diffusion method.

Bonev B, Hooper J, Parisot J.

J Antimicrob Chemother. 2008 Jun;61(6):1295-301. doi: 10.1093/jac/dkn090. Epub 2008 Mar 12.

PMID:
18339637
33.

Molecular mechanism of target recognition by subtilin, a class I lanthionine antibiotic.

Parisot J, Carey S, Breukink E, Chan WC, Narbad A, Bonev B.

Antimicrob Agents Chemother. 2008 Feb;52(2):612-8. Epub 2007 Nov 12.

34.

Nisin-induced changes in Bacillus morphology suggest a paradigm of antibiotic action.

Hyde AJ, Parisot J, McNichol A, Bonev BB.

Proc Natl Acad Sci U S A. 2006 Dec 26;103(52):19896-901. Epub 2006 Dec 18.

35.

Orientational order of Australian spider silks as determined by solid-state NMR.

Bonev B, Grieve S, Herberstein ME, Kishore AI, Watts A, Separovic F.

Biopolymers. 2006 Jun 5;82(2):134-43.

PMID:
16463360
36.

Parent volatiles in comet 9P/Tempel 1: before and after impact.

Mumma MJ, DiSanti MA, Magee-Sauer K, Bonev BP, Villanueva GL, Kawakita H, Dello Russo N, Gibb EL, Blake GA, Lyke JE, Campbell RD, Aycock J, Conrad A, Hill GM.

Science. 2005 Oct 14;310(5746):270-4. Epub 2005 Sep 15.

37.

Deep Impact: observations from a worldwide Earth-based campaign.

Meech KJ, Ageorges N, A'Hearn MF, Arpigny C, Ates A, Aycock J, Bagnulo S, Bailey J, Barber R, Barrera L, Barrena R, Bauer JM, Belton MJ, Bensch F, Bhattacharya B, Biver N, Blake G, Bockelée-Morvan D, Boehnhardt H, Bonev BP, Bonev T, Buie MW, Burton MG, Butner HM, Cabanac R, Campbell R, Campins H, Capria MT, Carroll T, Chaffee F, Charnley SB, Cleis R, Coates A, Cochran A, Colom P, Conrad A, Coulson IM, Crovisier J, deBuizer J, Dekany R, de Léon J, Dello Russo N, Delsanti A, DiSanti M, Drummond J, Dundon L, Etzel PB, Farnham TL, Feldman P, Fernández YR, Filipovic MD, Fisher S, Fitzsimmons A, Fong D, Fugate R, Fujiwara H, Fujiyoshi T, Furusho R, Fuse T, Gibb E, Groussin O, Gulkis S, Gurwell M, Hadamcik E, Hainaut O, Harker D, Harrington D, Harwit M, Hasegawa S, Hergenrother CW, Hirst P, Hodapp K, Honda M, Howell ES, Hutsemékers D, Iono D, Ip WH, Jackson W, Jehin E, Jiang ZJ, Jones GH, Jones PA, Kadono T, Kamath UW, Käufl HU, Kasuga T, Kawakita H, Kelley MS, Kerber F, Kidger M, Kinoshita D, Knight M, Lara L, Larson SM, Lederer S, Lee CF, Levasseur-Regourd AC, Li JY, Li QS, Licandro J, Lin ZY, Lisse CM, LoCurto G, Lovell AJ, Lowry SC, Lyke J, Lynch D, Ma J, Magee-Sauer K, Maheswar G, Manfroid J, Marco O, Martin P, Melnick G, Miller S, Miyata T, Moriarty-Schieven GH, Moskovitz N, Mueller BE, Mumma MJ, Muneer S, Neufeld DA, Ootsubo T, Osip D, Pandea SK, Pantin E, Paterno-Mahler R, Patten B, Penprase BE, Peck A, Petitas G, Pinilla-Alonso N, Pittichova J, Pompei E, Prabhu TP, Qi C, Rao R, Rauer H, Reitsema H, Rodgers SD, Rodriguez P, Ruane R, Ruch G, Rujopakarn W, Sahu DK, Sako S, Sakon I, Samarasinha N, Sarkissian JM, Saviane I, Schirmer M, Schultz P, Schulz R, Seitzer P, Sekiguchi T, Selman F, Serra-Ricart M, Sharp R, Snell RL, Snodgrass C, Stallard T, Stecklein G, Sterken C, Stüwe JA, Sugita S, Sumner M, Suntzeff N, Swaters R, Takakuwa S, Takato N, Thomas-Osip J, Thompson E, Tokunaga AT, Tozzi GP, Tran H, Troy M, Trujillo C, Van Cleve J, Vasundhara R, Vazquez R, Vilas F, Villanueva G, von Braun K, Vora P, Wainscoat RJ, Walsh K, Watanabe J, Weaver HA, Weaver W, Weiler M, Weissman PR, Welsh WF, Wilner D, Wolk S, Womack M, Wooden D, Woodney LM, Woodward C, Wu ZY, Wu JH, Yamashita T, Yang B, Yang YB, Yokogawa S, Zook AC, Zauderer A, Zhao X, Zhou X, Zucconi JM.

Science. 2005 Oct 14;310(5746):265-9. Epub 2005 Sep 8.

38.

Targeting extracellular pyrophosphates underpins the high selectivity of nisin.

Bonev BB, Breukink E, Swiezewska E, De Kruijff B, Watts A.

FASEB J. 2004 Dec;18(15):1862-9.

PMID:
15576489
39.

Interfacial anchor properties of tryptophan residues in transmembrane peptides can dominate over hydrophobic matching effects in peptide-lipid interactions.

de Planque MR, Bonev BB, Demmers JA, Greathouse DV, Koeppe RE 2nd, Separovic F, Watts A, Killian JA.

Biochemistry. 2003 May 13;42(18):5341-8.

PMID:
12731875
40.

Effects of the eukaryotic pore-forming cytolysin Equinatoxin II on lipid membranes and the role of sphingomyelin.

Bonev BB, Lam YH, Anderluh G, Watts A, Norton RS, Separovic F.

Biophys J. 2003 Apr;84(4):2382-92.

41.

Structural investigations of pneumolysin/lipid complexes.

Bonev B, Gilbert R, Watts A.

Mol Membr Biol. 2000 Oct-Dec;17(4):229-35.

PMID:
11302376
42.

Structural analysis of the protein/lipid complexes associated with pore formation by the bacterial toxin pneumolysin.

Bonev BB, Gilbert RJ, Andrew PW, Byron O, Watts A.

J Biol Chem. 2001 Feb 23;276(8):5714-9. Epub 2000 Nov 13.

43.

Interaction of the lantibiotic nisin with mixed lipid bilayers: a 31P and 2H NMR study.

Bonev BB, Chan WC, Bycroft BW, Roberts GC, Watts A.

Biochemistry. 2000 Sep 19;39(37):11425-33.

PMID:
10985788
44.
45.
46.

Results of TV imaging of Phobos (Experiment VSK-Fregat).

Avanesov G, Zhukov B, Ziman YA, Kostenko V, Kuzmin A, Murav'ev V, Fedotov V, Bonev B, Mishev D, Petkov D, Krumov A, Simeonov S, Boycheva V, Uzunov YU, Weide GG, Halmann D, Pössel W, Head J, Murchie S, Schkuratov YuG, Berghänel R, Danz M, Mangoldt T, Pihan U, Smith B, et al.

Planet Space Sci. 1991;39(1-2):281-95.

PMID:
11538495
47.

[Effect of some antibiotics on Ascaridia galli in chickens].

Bonev B.

Vet Med Nauki. 1973;10(5):43-8. Bulgarian. No abstract available.

PMID:
4802779

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