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Items: 32

1.

Evolution of the activation domain in a Hox transcription factor.

Liu Y, Huang A, Booth RM, Mendes GG, Merchant Z, Matthews KS, Bondos SE.

Int J Dev Biol. 2018;62(11-12):745-753. doi: 10.1387/ijdb.180151sb.

PMID:
30604844
2.

Generating Novel Materials Using the Intrinsically Disordered Protein Ubx.

Mendes GG, Booth RM, Pattison DL, Alvarez AJ, Bondos SE.

Methods Enzymol. 2018;611:583-605. doi: 10.1016/bs.mie.2018.08.007. Epub 2018 Sep 12.

PMID:
30471701
3.

Functionalization of Ultrabithorax Materials with Vascular Endothelial Growth Factor Enhances Angiogenic Activity.

Howell DW, Duran CL, Tsai SP, Bondos SE, Bayless KJ.

Biomacromolecules. 2016 Nov 14;17(11):3558-3569. Epub 2016 Oct 19.

PMID:
27715013
4.

Culture of Tumorigenic Cells on Protein Fibers Reveals Metastatic Cell Behaviors.

Hsiao HC, Santos A, Howell DW, Patterson JL, Fuchs-Young RS, Bondos SE.

Biomacromolecules. 2016 Nov 14;17(11):3790-3799. Epub 2016 Oct 17.

PMID:
27653640
5.

Separating full-length protein from aggregating proteolytic products using filter flow-through purification.

Churion KA, Rogers RE, Bayless KJ, Bondos SE.

Anal Biochem. 2016 Dec 1;514:8-11. doi: 10.1016/j.ab.2016.09.009. Epub 2016 Sep 10.

PMID:
27623435
6.

Identification of multiple dityrosine bonds in materials composed of the Drosophila protein Ultrabithorax.

Howell DW, Tsai SP, Churion K, Patterson J, Abbey C, Atkinson JT, Porterpan D, You YH, Meissner KE, Bayless KJ, Bondos SE.

Adv Funct Mater. 2015 Oct 7;25(37):5988-5998. doi: 10.1002/adfm.201502852. Epub 2015 Aug 31.

7.

Flexibility and Disorder in Gene Regulation: LacI/GalR and Hox Proteins.

Bondos SE, Swint-Kruse L, Matthews KS.

J Biol Chem. 2015 Oct 9;290(41):24669-77. doi: 10.1074/jbc.R115.685032. Epub 2015 Sep 4. Review.

8.

CDK8-Cyclin C Mediates Nutritional Regulation of Developmental Transitions through the Ecdysone Receptor in Drosophila.

Xie XJ, Hsu FN, Gao X, Xu W, Ni JQ, Xing Y, Huang L, Hsiao HC, Zheng H, Wang C, Zheng Y, Xiaoli AM, Yang F, Bondos SE, Ji JY.

PLoS Biol. 2015 Jul 29;13(7):e1002207. doi: 10.1371/journal.pbio.1002207. eCollection 2015 Jul. Erratum in: PLoS Biol. 2015 Aug;13(8):e1002250.

9.

Rethinking gene regulatory networks in light of alternative splicing, intrinsically disordered protein domains, and post-translational modifications.

Niklas KJ, Bondos SE, Dunker AK, Newman SA.

Front Cell Dev Biol. 2015 Feb 26;3:8. doi: 10.3389/fcell.2015.00008. eCollection 2015.

10.

Intrinsically disordered proteins and multicellular organisms.

Dunker AK, Bondos SE, Huang F, Oldfield CJ.

Semin Cell Dev Biol. 2015 Jan;37:44-55. doi: 10.1016/j.semcdb.2014.09.025. Epub 2014 Oct 13. Review.

PMID:
25307499
11.

The intrinsically disordered regions of the Drosophila melanogaster Hox protein ultrabithorax select interacting proteins based on partner topology.

Hsiao HC, Gonzalez KL, Catanese DJ Jr, Jordy KE, Matthews KS, Bondos SE.

PLoS One. 2014 Oct 6;9(10):e108217. doi: 10.1371/journal.pone.0108217. eCollection 2014.

12.

Measuring Hox-DNA binding by electrophoretic mobility shift analysis.

Churion K, Liu Y, Hsiao HC, Matthews KS, Bondos SE.

Methods Mol Biol. 2014;1196:211-30. doi: 10.1007/978-1-4939-1242-1_13.

PMID:
25151166
13.

Materials composed of the Drosophila Hox protein Ultrabithorax are biocompatible and nonimmunogenic.

Patterson JL, Arenas-Gamboa AM, Wang TY, Hsiao HC, Howell DW, Pellois JP, Rice-Ficht A, Bondos SE.

J Biomed Mater Res A. 2015 Apr;103(4):1546-53. doi: 10.1002/jbm.a.35295. Epub 2014 Aug 8.

PMID:
25087647
14.

Materials composed of the Drosophila melanogaster protein ultrabithorax are cytocompatible.

Patterson JL, Abbey CA, Bayless KJ, Bondos SE.

J Biomed Mater Res A. 2014 Jan;102(1):97-104. doi: 10.1002/jbm.a.34675. Epub 2013 Apr 18.

PMID:
23596050
15.

What's in a name? Why these proteins are intrinsically disordered: Why these proteins are intrinsically disordered.

Dunker AK, Babu MM, Barbar E, Blackledge M, Bondos SE, Dosztányi Z, Dyson HJ, Forman-Kay J, Fuxreiter M, Gsponer J, Han KH, Jones DT, Longhi S, Metallo SJ, Nishikawa K, Nussinov R, Obradovic Z, Pappu RV, Rost B, Selenko P, Subramaniam V, Sussman JL, Tompa P, Uversky VN.

Intrinsically Disord Proteins. 2013 Apr 1;1(1):e24157. doi: 10.4161/idp.24157. eCollection 2013 Jan-Dec. Review.

16.

Identifying solubility-promoting buffers for intrinsically disordered proteins prior to purification.

Churion KA, Bondos SE.

Methods Mol Biol. 2012;896:415-27. doi: 10.1007/978-1-4614-3704-8_28.

PMID:
22821541
17.

Roles for intrinsic disorder and fuzziness in generating context-specific function in Ultrabithorax, a Hox transcription factor.

Bondos SE, Hsiao HC.

Adv Exp Med Biol. 2012;725:86-105. doi: 10.1007/978-1-4614-0659-4_6. Review.

PMID:
22399320
18.

On the design of composite protein-quantum dot biomaterials via self-assembly.

Majithia R, Patterson J, Bondos SE, Meissner KE.

Biomacromolecules. 2011 Oct 10;12(10):3629-37. doi: 10.1021/bm200889k. Epub 2011 Sep 15.

PMID:
21892824
19.

Media composition influences yeast one- and two-hybrid results.

Liu Y, Merchant Z, Hsiao HC, Gonzalez KL, Matthews KS, Bondos SE.

Biol Proced Online. 2011 Aug 15;13:6. doi: 10.1186/1480-9222-13-6.

20.

Dynamic protein-DNA recognition: beyond what can be seen.

Fuxreiter M, Simon I, Bondos S.

Trends Biochem Sci. 2011 Aug;36(8):415-23. doi: 10.1016/j.tibs.2011.04.006. Epub 2011 May 27. Review.

PMID:
21620710
21.

Size dictates mechanical properties for protein fibers self-assembled by the Drosophila hox transcription factor ultrabithorax.

Huang Z, Lu Y, Majithia R, Shah J, Meissner K, Matthews KS, Bondos SE, Lou J.

Biomacromolecules. 2010 Dec 13;11(12):3644-51. doi: 10.1021/bm1010992. Epub 2010 Nov 3.

PMID:
21047055
22.

Internal regulatory interactions determine DNA binding specificity by a Hox transcription factor.

Liu Y, Matthews KS, Bondos SE.

J Mol Biol. 2009 Jul 24;390(4):760-74. doi: 10.1016/j.jmb.2009.05.059. Epub 2009 May 27.

23.

The Drosophila transcription factor ultrabithorax self-assembles into protein-based biomaterials with multiple morphologies.

Greer AM, Huang Z, Oriakhi A, Lu Y, Lou J, Matthews KS, Bondos SE.

Biomacromolecules. 2009 Apr 13;10(4):829-37. doi: 10.1021/bm801315v.

PMID:
19296655
24.

Multiple intrinsically disordered sequences alter DNA binding by the homeodomain of the Drosophila hox protein ultrabithorax.

Liu Y, Matthews KS, Bondos SE.

J Biol Chem. 2008 Jul 25;283(30):20874-87. doi: 10.1074/jbc.M800375200. Epub 2008 May 27.

25.

Team-teaching a current events-based biology course for nonmajors.

Bondos SE, Phillips D.

Biochem Mol Biol Educ. 2008 Jan;36(1):22-7. doi: 10.1002/bmb.20133.

26.

Variations on a theme: Hox and Wnt combinatorial regulation during animal development.

Bondos S.

Sci STKE. 2006 Oct 3;2006(355):pe38. Review.

PMID:
17018850
27.

Physical and genetic interactions link hox function with diverse transcription factors and cell signaling proteins.

Bondos SE, Tan XX, Matthews KS.

Mol Cell Proteomics. 2006 May;5(5):824-34. Epub 2006 Feb 2.

28.

Hox transcription factor ultrabithorax Ib physically and genetically interacts with disconnected interacting protein 1, a double-stranded RNA-binding protein.

Bondos SE, Catanese DJ Jr, Tan XX, Bicknell A, Li L, Matthews KS.

J Biol Chem. 2004 Jun 18;279(25):26433-44. Epub 2004 Mar 23.

29.

Detection and prevention of protein aggregation before, during, and after purification.

Bondos SE, Bicknell A.

Anal Biochem. 2003 May 15;316(2):223-31.

PMID:
12711344
30.

Transcription activation by ultrabithorax Ib protein requires a predicted alpha-helical region.

Tan XX, Bondos S, Li L, Matthews KS.

Biochemistry. 2002 Feb 26;41(8):2774-85.

PMID:
11851425
32.

High-pressure denaturation of apomyoglobin.

Bondos SE, Sligar S, Jonas J.

Biochim Biophys Acta. 2000 Jul 14;1480(1-2):353-64.

PMID:
11004573

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