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Items: 1 to 50 of 343

1.

Molecular basis of dengue virus serotype 2 morphological switch from 29°C to 37°C.

Lim XN, Shan C, Marzinek JK, Dong H, Ng TS, Ooi JSG, Fibriansah G, Wang J, Verma CS, Bond PJ, Shi PY, Lok SM.

PLoS Pathog. 2019 Sep 19;15(9):e1007996. doi: 10.1371/journal.ppat.1007996. eCollection 2019 Sep.

PMID:
31536610
2.

The structural basis for membrane assembly of immunoreceptor signalling complexes.

Dube N, Marzinek JK, Glen RC, Bond PJ.

J Mol Model. 2019 Aug 27;25(9):277. doi: 10.1007/s00894-019-4165-6.

PMID:
31456056
3.

Multiscale modeling of innate immune receptors: Endotoxin recognition and regulation by host defense peptides.

Holdbrook DA, Huber RG, Marzinek JK, Stubbusch A, Schmidtchen A, Bond PJ.

Pharmacol Res. 2019 Sep;147:104372. doi: 10.1016/j.phrs.2019.104372. Epub 2019 Jul 24. Review.

PMID:
31351116
4.

The rapid chemically induced corrosion of concrete sewers at high H2S concentration.

Li X, O'Moore L, Song Y, Bond PL, Yuan Z, Wilkie S, Hanzic L, Jiang G.

Water Res. 2019 Oct 1;162:95-104. doi: 10.1016/j.watres.2019.06.062. Epub 2019 Jun 24.

PMID:
31255785
5.

A T164S mutation in the dengue virus NS1 protein is associated with greater disease severity in mice.

Chan KWK, Watanabe S, Jin JY, Pompon J, Teng D, Alonso S, Vijaykrishna D, Halstead SB, Marzinek JK, Bond PJ, Burla B, Torta F, Wenk MR, Ooi EE, Vasudevan SG.

Sci Transl Med. 2019 Jun 26;11(498). pii: eaat7726. doi: 10.1126/scitranslmed.aat7726.

PMID:
31243154
6.

Multiscale Modeling and Simulation Approaches to Lipid-Protein Interactions.

Huber RG, Carpenter TS, Dube N, Holdbrook DA, Ingólfsson HI, Irvine WA, Marzinek JK, Samsudin F, Allison JR, Khalid S, Bond PJ.

Methods Mol Biol. 2019;2003:1-30. doi: 10.1007/978-1-4939-9512-7_1.

PMID:
31218611
7.

Structure and subunit arrangement of Mycobacterial F1FO ATP synthase and novel features of the unique mycobacterial subunit δ.

Kamariah N, Huber RG, Nartey W, Bhushan S, Bond PJ, Grüber G.

J Struct Biol. 2019 Aug 1;207(2):199-208. doi: 10.1016/j.jsb.2019.05.008. Epub 2019 May 24.

PMID:
31132404
8.

Periodic deprivation of gaseous hydrogen sulfide affects the activity of the concrete corrosion layer in sewers.

Sun X, Jiang G, Bond PL, Keller J.

Water Res. 2019 Jun 15;157:463-471. doi: 10.1016/j.watres.2019.03.074. Epub 2019 Mar 29.

PMID:
30981977
9.

A comparative proteomic analysis of Desulfovibrio vulgaris Hildenborough in response to the antimicrobial agent free nitrous acid.

Gao SH, Ho JY, Fan L, Nouwens A, Hoelzle RD, Schulz B, Guo J, Zhou J, Yuan Z, Bond PL.

Sci Total Environ. 2019 Jul 1;672:625-633. doi: 10.1016/j.scitotenv.2019.03.442. Epub 2019 Apr 3.

PMID:
30974354
10.

Correction to: Enhanced Growth of Pilin-Deficient Geobacter sulfurreducens Mutants in Carbon Poor and Electron Donor Limiting Conditions.

Semenec L, Vergara IA, Laloo AE, Mathews ER, Bond PL, Franks AE.

Microb Ecol. 2019 Mar 30. doi: 10.1007/s00248-019-01370-2. [Epub ahead of print]

PMID:
30929044
11.

Structure mapping of dengue and Zika viruses reveals functional long-range interactions.

Huber RG, Lim XN, Ng WC, Sim AYL, Poh HX, Shen Y, Lim SY, Sundstrom KB, Sun X, Aw JG, Too HK, Boey PH, Wilm A, Chawla T, Choy MM, Jiang L, de Sessions PF, Loh XJ, Alonso S, Hibberd M, Nagarajan N, Ooi EE, Bond PJ, Sessions OM, Wan Y.

Nat Commun. 2019 Mar 29;10(1):1408. doi: 10.1038/s41467-019-09391-8.

12.

Insights into water accessible pathways and the inactivation mechanism of proton translocation by the membrane-embedded domain of V-type ATPases.

Krah A, Marzinek JK, Bond PJ.

Biochim Biophys Acta Biomembr. 2019 May 1;1861(5):1004-1010. doi: 10.1016/j.bbamem.2019.02.010. Epub 2019 Mar 1.

PMID:
30831075
13.

The disordered plant dehydrin Lti30 protects the membrane during water-related stress by cross-linking lipids.

Gupta A, Marzinek JK, Jefferies D, Bond PJ, Harryson P, Wohland T.

J Biol Chem. 2019 Apr 19;294(16):6468-6482. doi: 10.1074/jbc.RA118.007163. Epub 2019 Feb 28.

PMID:
30819802
14.

Enhanced Growth of Pilin-Deficient Geobacter sulfurreducens Mutants in Carbon Poor and Electron Donor Limiting Conditions.

Semenec L, Vergara IA, Laloo AE, Mathews ER, Bond PL, Franks AE.

Microb Ecol. 2019 Oct;78(3):618-630. doi: 10.1007/s00248-019-01316-8. Epub 2019 Feb 13. Erratum in: Microb Ecol. 2019 Mar 30;:.

PMID:
30759269
15.

Physiological and transcriptomic analyses reveal CuO nanoparticle inhibition of anabolic and catabolic activities of sulfate-reducing bacterium.

Chen Z, Gao SH, Jin M, Sun S, Lu J, Yang P, Bond PL, Yuan Z, Guo J.

Environ Int. 2019 Apr;125:65-74. doi: 10.1016/j.envint.2019.01.058. Epub 2019 Jan 30.

16.

Infectivity of Dengue Virus Serotypes 1 and 2 Is Correlated with E-Protein Intrinsic Dynamics but Not to Envelope Conformations.

Sharma KK, Lim XX, Tantirimudalige SN, Gupta A, Marzinek JK, Holdbrook D, Lim XYE, Bond PJ, Anand GS, Wohland T.

Structure. 2019 Apr 2;27(4):618-630.e4. doi: 10.1016/j.str.2018.12.006. Epub 2019 Jan 24.

PMID:
30686666
17.

Evaluation of data-driven models for predicting the service life of concrete sewer pipes subjected to corrosion.

Li X, Khademi F, Liu Y, Akbari M, Wang C, Bond PL, Keller J, Jiang G.

J Environ Manage. 2019 Mar 15;234:431-439. doi: 10.1016/j.jenvman.2018.12.098. Epub 2019 Jan 11.

PMID:
30640168
18.

Directing GDNF-mediated neuronal signaling with proactively programmable cell-surface saccharide-free glycosaminoglycan mimetics.

Cai S, Lukamto DH, Toh JKC, Huber RG, Bond PJ, Jee JE, Lim TC, Liu P, Chen L, Qu QV, Lee SS, Lee SG.

Chem Commun (Camb). 2019 Jan 24;55(9):1259-1262. doi: 10.1039/c8cc09253b.

PMID:
30632548
19.

Energetic Fingerprinting of Ligand Binding to Paralogous Proteins: The Case of the Apoptotic Pathway.

Ivanov SM, Huber RG, Alibay I, Warwicker J, Bond PJ.

J Chem Inf Model. 2019 Jan 28;59(1):245-261. doi: 10.1021/acs.jcim.8b00765. Epub 2019 Jan 9.

PMID:
30582811
20.

Distinct microbially induced concrete corrosion at the tidal region of reinforced concrete sewers.

Song Y, Tian Y, Li X, Wei J, Zhang H, Bond PL, Yuan Z, Jiang G.

Water Res. 2019 Mar 1;150:392-402. doi: 10.1016/j.watres.2018.11.083. Epub 2018 Dec 6.

PMID:
30554077
21.

Engineering an Osmosensor by Pivotal Histidine Positioning within Disordered Helices.

Ghosh M, Wang LC, Huber RG, Gao Y, Morgan LK, Tulsian NK, Bond PJ, Kenney LJ, Anand GS.

Structure. 2019 Feb 5;27(2):302-314.e4. doi: 10.1016/j.str.2018.10.012. Epub 2018 Nov 29.

PMID:
30503779
22.

Mechanism of Enhanced Immature Dengue Virus Attachment to Endosomal Membrane Induced by prM Antibody.

Wirawan M, Fibriansah G, Marzinek JK, Lim XX, Ng TS, Sim AYL, Zhang Q, Kostyuchenko VA, Shi J, Smith SA, Verma CS, Anand G, Crowe JE Jr, Bond PJ, Lok SM.

Structure. 2019 Feb 5;27(2):253-267.e8. doi: 10.1016/j.str.2018.10.009. Epub 2018 Nov 21.

PMID:
30471923
23.

Facile saccharide-free mimetics that recapitulate key features of glycosaminoglycan sulfation patterns.

Lim TC, Cai S, Huber RG, Bond PJ, Siew Chia PX, Khou SL, Gao S, Lee SS, Lee SG.

Chem Sci. 2018 Aug 24;9(41):7940-7947. doi: 10.1039/c8sc02303d. eCollection 2018 Nov 7.

24.

Triclosan at environmentally relevant concentrations promotes horizontal transfer of multidrug resistance genes within and across bacterial genera.

Lu J, Wang Y, Li J, Mao L, Nguyen SH, Duarte T, Coin L, Bond P, Yuan Z, Guo J.

Environ Int. 2018 Dec;121(Pt 2):1217-1226. doi: 10.1016/j.envint.2018.10.040. Epub 2018 Oct 30.

25.

Antiepileptic drug carbamazepine promotes horizontal transfer of plasmid-borne multi-antibiotic resistance genes within and across bacterial genera.

Wang Y, Lu J, Mao L, Li J, Yuan Z, Bond PL, Guo J.

ISME J. 2019 Feb;13(2):509-522. doi: 10.1038/s41396-018-0275-x. Epub 2018 Oct 5.

26.

Single-molecule studies of flavivirus envelope dynamics: Experiment and computation.

Sharma KK, Marzinek JK, Tantirimudalige SN, Bond PJ, Wohland T.

Prog Biophys Mol Biol. 2019 May;143:38-51. doi: 10.1016/j.pbiomolbio.2018.09.001. Epub 2018 Sep 14. Review.

PMID:
30223001
27.

Single mutations in the ε subunit from thermophilic Bacillus PS3 generate a high binding affinity site for ATP.

Krah A, Bond PJ.

PeerJ. 2018 Sep 5;6:e5505. doi: 10.7717/peerj.5505. eCollection 2018.

28.

Corrosion of reinforcing steel in concrete sewers.

Song Y, Wightman E, Tian Y, Jack K, Li X, Zhong H, Bond PL, Yuan Z, Jiang G.

Sci Total Environ. 2019 Feb 1;649:739-748. doi: 10.1016/j.scitotenv.2018.08.362. Epub 2018 Aug 27.

PMID:
30176484
29.

Evidence of differential adaptation to decreased temperature by anammox bacteria.

Lin X, Wang Y, Ma X, Yan Y, Wu M, Bond PL, Guo J.

Environ Microbiol. 2018 Oct;20(10):3514-3528. doi: 10.1111/1462-2920.14306. Epub 2018 Sep 13.

PMID:
30051608
30.

Structural basis for endotoxin neutralisation and anti-inflammatory activity of thrombin-derived C-terminal peptides.

Saravanan R, Holdbrook DA, Petrlova J, Singh S, Berglund NA, Choong YK, Kjellström S, Bond PJ, Malmsten M, Schmidtchen A.

Nat Commun. 2018 Jul 17;9(1):2762. doi: 10.1038/s41467-018-05242-0.

31.

Influence of pH on the activity of thrombin-derived antimicrobial peptides.

Holdbrook DA, Singh S, Choong YK, Petrlova J, Malmsten M, Bond PJ, Verma NK, Schmidtchen A, Saravanan R.

Biochim Biophys Acta Biomembr. 2018 Nov;1860(11):2374-2384. doi: 10.1016/j.bbamem.2018.06.002. Epub 2018 Jun 6.

PMID:
29885294
32.

A Funneled Conformational Landscape Governs Flavivirus Fusion Peptide Interaction with Lipid Membranes.

Marzinek JK, Bag N, Huber RG, Holdbrook DA, Wohland T, Verma CS, Bond PJ.

J Chem Theory Comput. 2018 Jul 10;14(7):3920-3932. doi: 10.1021/acs.jctc.8b00438. Epub 2018 Jun 20.

PMID:
29874075
33.

The architecture of the OmpC-MlaA complex sheds light on the maintenance of outer membrane lipid asymmetry in Escherichia coli.

Yeow J, Tan KW, Holdbrook DA, Chong ZS, Marzinek JK, Bond PJ, Chng SS.

J Biol Chem. 2018 Jul 20;293(29):11325-11340. doi: 10.1074/jbc.RA118.002441. Epub 2018 May 30.

34.

Partial Intrinsic Disorder Governs the Dengue Capsid Protein Conformational Ensemble.

Boon PLS, Saw WG, Lim XX, Raghuvamsi PV, Huber RG, Marzinek JK, Holdbrook DA, Anand GS, Grüber G, Bond PJ.

ACS Chem Biol. 2018 Jun 15;13(6):1621-1630. doi: 10.1021/acschembio.8b00231. Epub 2018 Jun 5.

PMID:
29792674
35.

A Thermodynamic Funnel Drives Bacterial Lipopolysaccharide Transfer in the TLR4 Pathway.

Huber RG, Berglund NA, Kargas V, Marzinek JK, Holdbrook DA, Khalid S, Piggot TJ, Schmidtchen A, Bond PJ.

Structure. 2018 Aug 7;26(8):1151-1161.e4. doi: 10.1016/j.str.2018.04.007. Epub 2018 May 17.

36.

Evidence that TLR4 Is Not a Receptor for Saturated Fatty Acids but Mediates Lipid-Induced Inflammation by Reprogramming Macrophage Metabolism.

Lancaster GI, Langley KG, Berglund NA, Kammoun HL, Reibe S, Estevez E, Weir J, Mellett NA, Pernes G, Conway JRW, Lee MKS, Timpson P, Murphy AJ, Masters SL, Gerondakis S, Bartonicek N, Kaczorowski DC, Dinger ME, Meikle PJ, Bond PJ, Febbraio MA.

Cell Metab. 2018 May 1;27(5):1096-1110.e5. doi: 10.1016/j.cmet.2018.03.014. Epub 2018 Apr 19.

37.

An Optical Technique for Mapping Microviscosity Dynamics in Cellular Organelles.

Chambers JE, Kubánková M, Huber RG, López-Duarte I, Avezov E, Bond PJ, Marciniak SJ, Kuimova MK.

ACS Nano. 2018 May 22;12(5):4398-4407. doi: 10.1021/acsnano.8b00177. Epub 2018 Apr 18.

38.

Mechanisms of Persistence of the Ammonia-Oxidizing Bacteria Nitrosomonas to the Biocide Free Nitrous Acid.

Laloo AE, Wei J, Wang D, Narayanasamy S, Vanwonterghem I, Waite D, Steen J, Kaysen A, Heintz-Buschart A, Wang Q, Schulz B, Nouwens A, Wilmes P, Hugenholtz P, Yuan Z, Bond PL.

Environ Sci Technol. 2018 May 1;52(9):5386-5397. doi: 10.1021/acs.est.7b04273. Epub 2018 Apr 16.

PMID:
29620869
39.

The Use of Low Vacuum Scanning Electron Microscopy (LVSEM) to Analyze Peripheral Nerve Samples.

Bond P, Parkinson DB.

Methods Mol Biol. 2018;1739:349-357. doi: 10.1007/978-1-4939-7649-2_23.

PMID:
29546719
40.

Vesicular glutamate release from central axons contributes to myelin damage.

Doyle S, Hansen DB, Vella J, Bond P, Harper G, Zammit C, Valentino M, Fern R.

Nat Commun. 2018 Mar 12;9(1):1032. doi: 10.1038/s41467-018-03427-1.

41.

Activation of Toll-like receptors nucleates assembly of the MyDDosome signaling hub.

Latty SL, Sakai J, Hopkins L, Verstak B, Paramo T, Berglund NA, Cammarota E, Cicuta P, Gay NJ, Bond PJ, Klenerman D, Bryant CE.

Elife. 2018 Jan 24;7. pii: e31377. doi: 10.7554/eLife.31377.

42.

White matter tauopathy: Transient functional loss and novel myelin remodeling.

Jackson J, Bianco G, Rosa AO, Cowan K, Bond P, Anichtchik O, Fern R.

Glia. 2018 Apr;66(4):813-827. doi: 10.1002/glia.23286. Epub 2018 Jan 8.

PMID:
29315804
43.

Increase of enzyme activity through specific covalent modification with fragments.

Darby JF, Atobe M, Firth JD, Bond P, Davies GJ, O'Brien P, Hubbard RE.

Chem Sci. 2017 Nov 1;8(11):7772-7779. doi: 10.1039/c7sc01966a. Epub 2017 Sep 27.

44.

Data on metagenomic profiles of activated sludge from a full-scale wastewater treatment plant.

Guo J, Ni BJ, Han X, Chen X, Bond P, Peng Y, Yuan Z.

Data Brief. 2017 Oct 21;15:833-839. doi: 10.1016/j.dib.2017.10.048. eCollection 2017 Dec.

45.

Silver nanoparticles stimulate the proliferation of sulfate reducing bacterium Desulfovibrio vulgaris.

Chen Z, Lu J, Gao SH, Jin M, Bond PL, Yang P, Yuan Z, Guo J.

Water Res. 2018 Feb 1;129:163-171. doi: 10.1016/j.watres.2017.11.021. Epub 2017 Nov 8.

PMID:
29149671
46.

Effect of the anode potential on the physiology and proteome of Shewanella oneidensis MR-1.

Grobbler C, Virdis B, Nouwens A, Harnisch F, Rabaey K, Bond PL.

Bioelectrochemistry. 2018 Feb;119:172-179. doi: 10.1016/j.bioelechem.2017.10.001. Epub 2017 Oct 3.

PMID:
29032328
47.

Protein-protein interactions in paralogues: Electrostatics modulates specificity on a conserved steric scaffold.

Ivanov SM, Cawley A, Huber RG, Bond PJ, Warwicker J.

PLoS One. 2017 Oct 10;12(10):e0185928. doi: 10.1371/journal.pone.0185928. eCollection 2017.

48.

Deciphering the electric code of Geobacter sulfurreducens in cocultures with Pseudomonas aeruginosa via SWATH-MS proteomics.

Semenec L, Laloo AE, Schulz BL, Vergara IA, Bond PL, Franks AE.

Bioelectrochemistry. 2018 Feb;119:150-160. doi: 10.1016/j.bioelechem.2017.09.013. Epub 2017 Oct 3.

PMID:
28992596
49.

Comparison of microbial communities across sections of a corroding sewer pipe and the effects of wastewater flooding.

Cayford BI, Jiang G, Keller J, Tyson G, Bond PL.

Biofouling. 2017 Oct;33(9):780-792. doi: 10.1080/08927014.2017.1369050. Epub 2017 Sep 28.

PMID:
28956470
50.

Editorial.

Bond PJ, Verma CS.

Prog Biophys Mol Biol. 2017 Sep;128:1-2. doi: 10.1016/j.pbiomolbio.2017.07.005. No abstract available.

PMID:
28743422

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