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Items: 1 to 50 of 177

1.

Doxorubicin-induced cardiotoxicity is suppressed by estrous-staged treatment and exogenous 17β-estradiol in female tumor-bearing spontaneously hypertensive rats.

Pokrzywinski KL, Biel TG, Rosen ET, Bonanno JL, Aryal B, Mascia F, Moshkelani D, Mog S, Rao VA.

Biol Sex Differ. 2018 Jun 15;9(1):25. doi: 10.1186/s13293-018-0183-9.

2.

Functional assignment of multiple catabolic pathways for D-apiose.

Carter MS, Zhang X, Huang H, Bouvier JT, Francisco BS, Vetting MW, Al-Obaidi N, Bonanno JB, Ghosh A, Zallot RG, Andersen HM, Almo SC, Gerlt JA.

Nat Chem Biol. 2018 Jul;14(7):696-705. doi: 10.1038/s41589-018-0067-7. Epub 2018 Jun 4.

PMID:
29867142
3.

Comparison of Alicyclobacillus acidocaldarius o-Succinylbenzoate Synthase to Its Promiscuous N-Succinylamino Acid Racemase/ o-Succinylbenzoate Synthase Relatives.

Odokonyero D, McMillan AW, Ramagopal UA, Toro R, Truong DP, Zhu M, Lopez MS, Somiari B, Herman M, Aziz A, Bonanno JB, Hull KG, Burley SK, Romo D, Almo SC, Glasner ME.

Biochemistry. 2018 Jul 3;57(26):3676-3689. doi: 10.1021/acs.biochem.8b00088. Epub 2018 May 30.

PMID:
29767960
4.

Anti-CTLA-4 therapy requires an Fc domain for efficacy.

Ingram JR, Blomberg OS, Rashidian M, Ali L, Garforth S, Fedorov E, Fedorov AA, Bonanno JB, Le Gall C, Crowley S, Espinosa C, Biary T, Keliher EJ, Weissleder R, Almo SC, Dougan SK, Ploegh HL, Dougan M.

Proc Natl Acad Sci U S A. 2018 Apr 10;115(15):3912-3917. doi: 10.1073/pnas.1801524115. Epub 2018 Mar 26.

5.

Hypoxia and the Prolyl Hydroxylase Inhibitor FG-4592 Protect Corneal Endothelial Cells From Mechanical and Perioperative Surgical Stress.

Bhadange Y, Lautert J, Li S, Lawando E, Kim ET, Soper MC, Price FW Jr, Price MO, Bonanno JA.

Cornea. 2018 Apr;37(4):501-507. doi: 10.1097/ICO.0000000000001430.

PMID:
29504956
6.

X-ray and EPR Characterization of the Auxiliary Fe-S Clusters in the Radical SAM Enzyme PqqE.

Barr I, Stich TA, Gizzi AS, Grove TL, Bonanno JB, Latham JA, Chung T, Wilmot CM, Britt RD, Almo SC, Klinman JP.

Biochemistry. 2018 Feb 27;57(8):1306-1315. doi: 10.1021/acs.biochem.7b01097. Epub 2018 Feb 6.

PMID:
29405700
7.

Mechanism and Structure of γ-Resorcylate Decarboxylase.

Sheng X, Patskovsky Y, Vladimirova A, Bonanno JB, Almo SC, Himo F, Raushel FM.

Biochemistry. 2018 Jun 5;57(22):3167-3175. doi: 10.1021/acs.biochem.7b01213. Epub 2018 Jan 19.

PMID:
29283551
8.

Structures of the L27 Domain of Disc Large Homologue 1 Protein Illustrate a Self-Assembly Module.

Ghosh A, Ramagopal UA, Bonanno JB, Brenowitz M, Almo SC.

Biochemistry. 2018 Feb 27;57(8):1293-1305. doi: 10.1021/acs.biochem.7b01074. Epub 2018 Feb 7.

PMID:
29261291
9.

Structural insights into substrate and inhibitor binding sites in human indoleamine 2,3-dioxygenase 1.

Lewis-Ballester A, Pham KN, Batabyal D, Karkashon S, Bonanno JB, Poulos TL, Yeh SR.

Nat Commun. 2017 Nov 22;8(1):1693. doi: 10.1038/s41467-017-01725-8.

10.

Conditionally Immortal Slc4a11-/- Mouse Corneal Endothelial Cell Line Recapitulates Disrupted Glutaminolysis Seen in Slc4a11-/- Mouse Model.

Zhang W, Ogando DG, Kim ET, Choi MJ, Li H, Tenessen JM, Bonanno JA.

Invest Ophthalmol Vis Sci. 2017 Jul 1;58(9):3723-3731. doi: 10.1167/iovs.17-21781.

11.

Structural Insights into Thioether Bond Formation in the Biosynthesis of Sactipeptides.

Grove TL, Himes PM, Hwang S, Yumerefendi H, Bonanno JB, Kuhlman B, Almo SC, Bowers AA.

J Am Chem Soc. 2017 Aug 30;139(34):11734-11744. doi: 10.1021/jacs.7b01283. Epub 2017 Aug 21.

PMID:
28704043
12.

Structural basis for cancer immunotherapy by the first-in-class checkpoint inhibitor ipilimumab.

Ramagopal UA, Liu W, Garrett-Thomson SC, Bonanno JB, Yan Q, Srinivasan M, Wong SC, Bell A, Mankikar S, Rangan VS, Deshpande S, Korman AJ, Almo SC.

Proc Natl Acad Sci U S A. 2017 May 23;114(21):E4223-E4232. doi: 10.1073/pnas.1617941114. Epub 2017 May 8.

13.

Stilbene epoxidation and detoxification in a Photorhabdus luminescens-nematode symbiosis.

Park HB, Sampathkumar P, Perez CE, Lee JH, Tran J, Bonanno JB, Hallem EA, Almo SC, Crawford JM.

J Biol Chem. 2017 Apr 21;292(16):6680-6694. doi: 10.1074/jbc.M116.762542. Epub 2017 Feb 28.

14.

Molecular Architecture of the Major Membrane Ring Component of the Nuclear Pore Complex.

Upla P, Kim SJ, Sampathkumar P, Dutta K, Cahill SM, Chemmama IE, Williams R, Bonanno JB, Rice WJ, Stokes DL, Cowburn D, Almo SC, Sali A, Rout MP, Fernandez-Martinez J.

Structure. 2017 Mar 7;25(3):434-445. doi: 10.1016/j.str.2017.01.006. Epub 2017 Feb 2.

15.

Glutaminolysis is Essential for Energy Production and Ion Transport in Human Corneal Endothelium.

Zhang W, Li H, Ogando DG, Li S, Feng M, Price FW Jr, Tennessen JM, Bonanno JA.

EBioMedicine. 2017 Feb;16:292-301. doi: 10.1016/j.ebiom.2017.01.004. Epub 2017 Jan 13.

16.

Crystal Structure of the Complex of Human FasL and Its Decoy Receptor DcR3.

Liu W, Ramagopal U, Cheng H, Bonanno JB, Toro R, Bhosle R, Zhan C, Almo SC.

Structure. 2016 Nov 1;24(11):2016-2023. doi: 10.1016/j.str.2016.09.009.

17.

Fluid transport by the cornea endothelium is dependent on buffering lactic acid efflux.

Li S, Kim E, Bonanno JA.

Am J Physiol Cell Physiol. 2016 Jul 1;311(1):C116-26. doi: 10.1152/ajpcell.00095.2016. Epub 2016 May 25.

18.

Substrate Distortion and the Catalytic Reaction Mechanism of 5-Carboxyvanillate Decarboxylase.

Vladimirova A, Patskovsky Y, Fedorov AA, Bonanno JB, Fedorov EV, Toro R, Hillerich B, Seidel RD, Richards NG, Almo SC, Raushel FM.

J Am Chem Soc. 2016 Jan 27;138(3):826-36. doi: 10.1021/jacs.5b08251. Epub 2016 Jan 12.

19.

Increased Heterologous Protein Expression in Drosophila S2 Cells for Massive Production of Immune Ligands/Receptors and Structural Analysis of Human HVEM.

Liu W, Vigdorovich V, Zhan C, Patskovsky Y, Bonanno JB, Nathenson SG, Almo SC.

Mol Biotechnol. 2015 Oct;57(10):914-22. doi: 10.1007/s12033-015-9881-2.

PMID:
26202493
20.

Cannabinoid-induced chemotaxis in bovine corneal epithelial cells.

Murataeva N, Li S, Oehler O, Miller S, Dhopeshwarkar A, Hu SS, Bonanno JA, Bradshaw H, Mackie K, McHugh D, Straiker A.

Invest Ophthalmol Vis Sci. 2015 May;56(5):3304-13. doi: 10.1167/iovs.14-15675.

21.

Human SLC4A11 Is a Novel NH3/H+ Co-transporter.

Zhang W, Ogando DG, Bonanno JA, Obukhov AG.

J Biol Chem. 2015 Jul 3;290(27):16894-905. doi: 10.1074/jbc.M114.627455. Epub 2015 May 27.

22.

Determinants of the CmoB carboxymethyl transferase utilized for selective tRNA wobble modification.

Kim J, Xiao H, Koh J, Wang Y, Bonanno JB, Thomas K, Babbitt PC, Brown S, Lee YS, Almo SC.

Nucleic Acids Res. 2015 May 19;43(9):4602-13. doi: 10.1093/nar/gkv206. Epub 2015 Apr 8.

23.

Histone H2A and H4 N-terminal tails are positioned by the MEP50 WD repeat protein for efficient methylation by the PRMT5 arginine methyltransferase.

Burgos ES, Wilczek C, Onikubo T, Bonanno JB, Jansong J, Reimer U, Shechter D.

J Biol Chem. 2015 Apr 10;290(15):9674-89. doi: 10.1074/jbc.M115.636894. Epub 2015 Feb 24.

24.

Loss of ion transporters and increased unfolded protein response in Fuchs' dystrophy.

Jalimarada SS, Ogando DG, Bonanno JA.

Mol Vis. 2014 Dec 12;20:1668-79. eCollection 2014.

25.

Integrative structure-function mapping of the nucleoporin Nup133 suggests a conserved mechanism for membrane anchoring of the nuclear pore complex.

Kim SJ, Fernandez-Martinez J, Sampathkumar P, Martel A, Matsui T, Tsuruta H, Weiss TM, Shi Y, Markina-Inarrairaegui A, Bonanno JB, Sauder JM, Burley SK, Chait BT, Almo SC, Rout MP, Sali A.

Mol Cell Proteomics. 2014 Nov;13(11):2911-26. doi: 10.1074/mcp.M114.040915. Epub 2014 Aug 19.

26.

Mechanistic basis for functional promiscuity in the TNF and TNF receptor superfamilies: structure of the LIGHT:DcR3 assembly.

Liu W, Zhan C, Cheng H, Kumar PR, Bonanno JB, Nathenson SG, Almo SC.

Structure. 2014 Sep 2;22(9):1252-1262. doi: 10.1016/j.str.2014.06.013. Epub 2014 Jul 31.

27.

CD147 required for corneal endothelial lactate transport.

Li S, Nguyen TT, Bonanno JA.

Invest Ophthalmol Vis Sci. 2014 Jun 26;55(7):4673-81. doi: 10.1167/iovs.14-14386.

28.

Loss of quaternary structure is associated with rapid sequence divergence in the OSBS family.

Odokonyero D, Sakai A, Patskovsky Y, Malashkevich VN, Fedorov AA, Bonanno JB, Fedorov EV, Toro R, Agarwal R, Wang C, Ozerova ND, Yew WS, Sauder JM, Swaminathan S, Burley SK, Almo SC, Glasner ME.

Proc Natl Acad Sci U S A. 2014 Jun 10;111(23):8535-40. doi: 10.1073/pnas.1318703111. Epub 2014 May 28.

29.

Cornea and ocular surface disease: application of cutting-edge optometric research.

Robertson DM, Alexander LJ, Bonanno JA, Fleiszig SM, McNamara N.

Optom Vis Sci. 2014 Apr;91(4 Suppl 1):S3-16. doi: 10.1097/OPX.0000000000000226. Review.

30.

Structural context of disease-associated mutations and putative mechanism of autoinhibition revealed by X-ray crystallographic analysis of the EZH2-SET domain.

Antonysamy S, Condon B, Druzina Z, Bonanno JB, Gheyi T, Zhang F, MacEwan I, Zhang A, Ashok S, Rodgers L, Russell M, Gately Luz J.

PLoS One. 2013 Dec 19;8(12):e84147. doi: 10.1371/journal.pone.0084147. eCollection 2013.

31.

Divergent evolution of ligand binding in the o-succinylbenzoate synthase family.

Odokonyero D, Ragumani S, Lopez MS, Bonanno JB, Ozerova ND, Woodard DR, Machala BW, Swaminathan S, Burley SK, Almo SC, Glasner ME.

Biochemistry. 2013 Oct 22;52(42):7512-21. doi: 10.1021/bi401176d. Epub 2013 Oct 9.

32.

Discovery of new enzymes and metabolic pathways by using structure and genome context.

Zhao S, Kumar R, Sakai A, Vetting MW, Wood BM, Brown S, Bonanno JB, Hillerich BS, Seidel RD, Babbitt PC, Almo SC, Sweedler JV, Gerlt JA, Cronan JE, Jacobson MP.

Nature. 2013 Oct 31;502(7473):698-702. doi: 10.1038/nature12576. Epub 2013 Sep 22.

33.

SLC4A11 is an EIPA-sensitive Na(+) permeable pHi regulator.

Ogando DG, Jalimarada SS, Zhang W, Vithana EN, Bonanno JA.

Am J Physiol Cell Physiol. 2013 Oct 1;305(7):C716-27. doi: 10.1152/ajpcell.00056.2013. Epub 2013 Jul 17.

34.

Ion transport function of SLC4A11 in corneal endothelium.

Jalimarada SS, Ogando DG, Vithana EN, Bonanno JA.

Invest Ophthalmol Vis Sci. 2013 Jun 21;54(6):4330-40. doi: 10.1167/iovs.13-11929.

35.

Structure-guided discovery of the metabolite carboxy-SAM that modulates tRNA function.

Kim J, Xiao H, Bonanno JB, Kalyanaraman C, Brown S, Tang X, Al-Obaidi NF, Patskovsky Y, Babbitt PC, Jacobson MP, Lee YS, Almo SC.

Nature. 2013 Jun 6;498(7452):123-6. doi: 10.1038/nature12180. Epub 2013 May 15.

36.

Crystal structure of human Karyopherin β2 bound to the PY-NLS of Saccharomyces cerevisiae Nab2.

Soniat M, Sampathkumar P, Collett G, Gizzi AS, Banu RN, Bhosle RC, Chamala S, Chowdhury S, Fiser A, Glenn AS, Hammonds J, Hillerich B, Khafizov K, Love JD, Matikainen B, Seidel RD, Toro R, Rajesh Kumar P, Bonanno JB, Chook YM, Almo SC.

J Struct Funct Genomics. 2013 Jun;14(2):31-5. doi: 10.1007/s10969-013-9150-1. Epub 2013 Mar 28.

37.

Structure, dynamics, evolution, and function of a major scaffold component in the nuclear pore complex.

Sampathkumar P, Kim SJ, Upla P, Rice WJ, Phillips J, Timney BL, Pieper U, Bonanno JB, Fernandez-Martinez J, Hakhverdyan Z, Ketaren NE, Matsui T, Weiss TM, Stokes DL, Sauder JM, Burley SK, Sali A, Rout MP, Almo SC.

Structure. 2013 Apr 2;21(4):560-71. doi: 10.1016/j.str.2013.02.005. Epub 2013 Mar 14.

38.

Structure of the arginine methyltransferase PRMT5-MEP50 reveals a mechanism for substrate specificity.

Ho MC, Wilczek C, Bonanno JB, Xing L, Seznec J, Matsui T, Carter LG, Onikubo T, Kumar PR, Chan MK, Brenowitz M, Cheng RH, Reimer U, Almo SC, Shechter D.

PLoS One. 2013;8(2):e57008. doi: 10.1371/journal.pone.0057008. Epub 2013 Feb 25. Erratum in: PLoS One. 2013;8(8). doi:10.1371/annotation/e6b5348e-9052-4a3b-8f06-90d01dc88fc2.

39.

Telomerase immortalization of human corneal endothelial cells yields functional hexagonal monolayers.

Schmedt T, Chen Y, Nguyen TT, Li S, Bonanno JA, Jurkunas UV.

PLoS One. 2012;7(12):e51427. doi: 10.1371/journal.pone.0051427. Epub 2012 Dec 21.

40.

1-methylthio-D-xylulose 5-phosphate methylsulfurylase: a novel route to 1-deoxy-D-xylulose 5-phosphate in Rhodospirillum rubrum.

Warlick BP, Evans BS, Erb TJ, Ramagopal UA, Sriram J, Imker HJ, Sauder JM, Bonanno JB, Burley SK, Tabita FR, Almo SC, Sweedler JS, Gerlt JA.

Biochemistry. 2012 Oct 23;51(42):8324-6. doi: 10.1021/bi301215g. Epub 2012 Oct 8.

41.

Cas5d processes pre-crRNA and is a member of a larger family of CRISPR RNA endonucleases.

Garside EL, Schellenberg MJ, Gesner EM, Bonanno JB, Sauder JM, Burley SK, Almo SC, Mehta G, MacMillan AM.

RNA. 2012 Nov;18(11):2020-8. doi: 10.1261/rna.033100.112. Epub 2012 Sep 24.

42.

Depletion of SLC4A11 causes cell death by apoptosis in an immortalized human corneal endothelial cell line.

Liu J, Seet LF, Koh LW, Venkatraman A, Venkataraman D, Mohan RR, Praetorius J, Bonanno JA, Aung T, Vithana EN.

Invest Ophthalmol Vis Sci. 2012 Jun 5;53(7):3270-9. doi: 10.1167/iovs.11-8724.

43.

Lactate-H⁺ transport is a significant component of the in vivo corneal endothelial pump.

Nguyen TT, Bonanno JA.

Invest Ophthalmol Vis Sci. 2012 Apr 18;53(4):2020-9. doi: 10.1167/iovs.12-9475.

44.

SOD2 contributes to anti-oxidative capacity in rabbit corneal endothelial cells.

Liu C, Ogando D, Bonanno JA.

Mol Vis. 2011;17:2473-81. Epub 2011 Sep 24.

45.

Bicarbonate, NBCe1, NHE, and carbonic anhydrase activity enhance lactate-H+ transport in bovine corneal endothelium.

Nguyen TT, Bonanno JA.

Invest Ophthalmol Vis Sci. 2011 Oct 17;52(11):8086-93. doi: 10.1167/iovs.11-8086.

46.

Oxygen-deficient metabolism and corneal edema.

Leung BK, Bonanno JA, Radke CJ.

Prog Retin Eye Res. 2011 Nov;30(6):471-92. doi: 10.1016/j.preteyeres.2011.07.001. Epub 2011 Jul 26.

47.

Molecular mechanisms underlying the corneal endothelial pump.

Bonanno JA.

Exp Eye Res. 2012 Feb;95(1):2-7. doi: 10.1016/j.exer.2011.06.004. Epub 2011 Jun 15. Review.

48.

Structure of the C-terminal domain of Saccharomyces cerevisiae Nup133, a component of the nuclear pore complex.

Sampathkumar P, Gheyi T, Miller SA, Bain KT, Dickey M, Bonanno JB, Kim SJ, Phillips J, Pieper U, Fernandez-Martinez J, Franke JD, Martel A, Tsuruta H, Atwell S, Thompson DA, Emtage JS, Wasserman SR, Rout MP, Sali A, Sauder JM, Burley SK.

Proteins. 2011 May;79(5):1672-7. doi: 10.1002/prot.22973. Epub 2011 Mar 1. No abstract available.

49.

Soluble adenylyl cyclase mediates bicarbonate-dependent corneal endothelial cell protection.

Li S, Allen KT, Bonanno JA.

Am J Physiol Cell Physiol. 2011 Feb;300(2):C368-74. doi: 10.1152/ajpcell.00314.2010. Epub 2010 Dec 1.

50.

Structural underpinnings of nitrogen regulation by the prototypical nitrogen-responsive transcriptional factor NrpR.

Wisedchaisri G, Dranow DM, Lie TJ, Bonanno JB, Patskovsky Y, Ozyurt SA, Sauder JM, Almo SC, Wasserman SR, Burley SK, Leigh JA, Gonen T.

Structure. 2010 Nov 10;18(11):1512-21. doi: 10.1016/j.str.2010.08.014.

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