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Items: 31

1.

Base excision repair deficiency signatures implicate germline and somatic MUTYH aberrations in pancreatic ductal adenocarcinoma and breast cancer oncogenesis.

Thibodeau ML, Zhao EY, Reisle C, Ch'ng C, Wong HL, Shen Y, Jones MR, Lim HJ, Young S, Cremin C, Pleasance E, Zhang W, Holt R, Eirew P, Karasinska J, Kalloger SE, Taylor G, Majounie E, Bonakdar M, Zong Z, Bleile D, Chiu R, Birol I, Gelmon K, Lohrisch C, Mungall KL, Mungall AJ, Moore R, Ma YP, Fok A, Yip S, Karsan A, Huntsman D, Schaeffer DF, Laskin J, Marra MA, Renouf DJ, Jones SJM, Schrader KA.

Cold Spring Harb Mol Case Stud. 2019 Apr 1;5(2). pii: a003681. doi: 10.1101/mcs.a003681. Print 2019 Apr.

2.

A Counterselectable Sucrose Sensitivity Marker Permits Efficient and Flexible Mutagenesis in Streptococcus agalactiae.

Hooven TA, Bonakdar M, Chamby AB, Ratner AJ.

Appl Environ Microbiol. 2019 Mar 22;85(7). pii: e03009-18. doi: 10.1128/AEM.03009-18. Print 2019 Apr 1.

3.

Mini-Laparoscopic Management of Ureteropelvic Junction Obstruction in Adults and Children: A High-Volume Case Series.

Simforoosh N, Ansari Djafari A, Shemshaki H, Shakiba B, Golshan A, Bonakdar M.

J Laparoendosc Adv Surg Tech A. 2019 Jun;29(6):747-751. doi: 10.1089/lap.2018.0470. Epub 2019 Jan 4.

PMID:
30615568
4.

Whole genome and whole transcriptome genomic profiling of a metastatic eccrine porocarcinoma.

Thibodeau ML, Bonakdar M, Zhao E, Mungall KL, Reisle C, Zhang W, Bye MH, Thiessen N, Bleile D, Mungall AJ, Ma YP, Jones MR, Renouf DJ, Lim HJ, Yip S, Ng T, Ho C, Laskin J, Marra MA, Schrader KA, Jones SJM.

NPJ Precis Oncol. 2018 Mar 19;2(1):8. doi: 10.1038/s41698-018-0050-5. eCollection 2018.

5.

Effects of internal electrode cooling on irreversible electroporation using a perfused organ model.

O'Brien TJ, Bonakdar M, Bhonsle S, Neal RE 2nd, Aardema CH Jr, Robertson JL, Goldberg SN, Davalos RV.

Int J Hyperthermia. 2018;35(1):44-55. doi: 10.1080/02656736.2018.1473893. Epub 2018 May 28.

PMID:
29806513
6.

Personalized oncogenomic analysis of metastatic adenoid cystic carcinoma: using whole-genome sequencing to inform clinical decision-making.

Chahal M, Pleasance E, Grewal J, Zhao E, Ng T, Chapman E, Jones MR, Shen Y, Mungall KL, Bonakdar M, Taylor GA, Ma Y, Mungall AJ, Moore RA, Lim H, Renouf D, Yip S, Jones SJM, Marra MA, Laskin J.

Cold Spring Harb Mol Case Stud. 2018 Apr 2;4(2). pii: a002626. doi: 10.1101/mcs.a002626. Print 2018 Apr.

7.

Molecular characterization of ERBB2-amplified colorectal cancer identifies potential mechanisms of resistance to targeted therapies: a report of two instructive cases.

Owen DR, Wong HL, Bonakdar M, Jones M, Hughes CS, Morin GB, Jones SJM, Renouf DJ, Lim H, Laskin J, Marra M, Yip S, Schaeffer DF.

Cold Spring Harb Mol Case Stud. 2018 Apr 2;4(2). pii: a002535. doi: 10.1101/mcs.a002535. Print 2018 Apr.

8.

A microfluidic model of the blood-brain barrier to study permeabilization by pulsed electric fields.

Bonakdar M, Graybill PM, Davalos RV.

RSC Adv. 2017;7(68):42811-42818. doi: 10.1039/C7RA07603G. Epub 2017 Sep 5.

9.

Serial immunological parameters in a phase II trial of exemestane and low-dose oral cyclophosphamide in advanced hormone receptor-positive breast cancer.

Kwa M, Li X, Novik Y, Oratz R, Jhaveri K, Wu J, Gu P, Meyers M, Muggia F, Speyer J, Iwano A, Bonakdar M, Kozhaya L, Tavukcuoglu E, Budan B, Raad R, Goldberg JD, Unutmaz D, Adams S.

Breast Cancer Res Treat. 2018 Feb;168(1):57-67. doi: 10.1007/s10549-017-4570-4. Epub 2017 Nov 9.

PMID:
29124456
10.

The Streptococcus agalactiae Stringent Response Enhances Virulence and Persistence in Human Blood.

Hooven TA, Catomeris AJ, Bonakdar M, Tallon LJ, Santana-Cruz I, Ott S, Daugherty SC, Tettelin H, Ratner AJ.

Infect Immun. 2017 Dec 19;86(1). pii: e00612-17. doi: 10.1128/IAI.00612-17. Print 2018 Jan.

11.

Mucosal vaccination promotes clearance of Streptococcus agalactiae vaginal colonization.

Baker JA, Lewis EL, Byland LM, Bonakdar M, Randis TM, Ratner AJ.

Vaccine. 2017 Mar 1;35(9):1273-1280. doi: 10.1016/j.vaccine.2017.01.029. Epub 2017 Feb 2.

12.

CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer.

Griffith M, Spies NC, Krysiak K, McMichael JF, Coffman AC, Danos AM, Ainscough BJ, Ramirez CA, Rieke DT, Kujan L, Barnell EK, Wagner AH, Skidmore ZL, Wollam A, Liu CJ, Jones MR, Bilski RL, Lesurf R, Feng YY, Shah NM, Bonakdar M, Trani L, Matlock M, Ramu A, Campbell KM, Spies GC, Graubert AP, Gangavarapu K, Eldred JM, Larson DE, Walker JR, Good BM, Wu C, Su AI, Dienstmann R, Margolin AA, Tamborero D, Lopez-Bigas N, Jones SJ, Bose R, Spencer DH, Wartman LD, Wilson RK, Mardis ER, Griffith OL.

Nat Genet. 2017 Jan 31;49(2):170-174. doi: 10.1038/ng.3774. No abstract available.

13.

Characterization of Irreversible Electroporation Ablation with a Validated Perfused Organ Model.

Bhonsle S, Bonakdar M, Neal RE 2nd, Aardema C, Robertson JL, Howarth J, Kavnoudias H, Thomson KR, Goldberg SN, Davalos RV.

J Vasc Interv Radiol. 2016 Dec;27(12):1913-1922.e2. doi: 10.1016/j.jvir.2016.07.012. Epub 2016 Sep 21.

PMID:
27663353
14.

Extracellular sodium dependence of the conduction velocity-calcium relationship: evidence of ephaptic self-attenuation.

George SA, Bonakdar M, Zeitz M, Davalos RV, Smyth JW, Poelzing S.

Am J Physiol Heart Circ Physiol. 2016 May 1;310(9):H1129-39. doi: 10.1152/ajpheart.00857.2015. Epub 2016 Mar 4.

15.

Electroporation of Brain Endothelial Cells on Chip toward Permeabilizing the Blood-Brain Barrier.

Bonakdar M, Wasson EM, Lee YW, Davalos RV.

Biophys J. 2016 Jan 19;110(2):503-513. doi: 10.1016/j.bpj.2015.11.3517.

16.

Improving cancer therapies by targeting the physical and chemical hallmarks of the tumor microenvironment.

Ivey JW, Bonakdar M, Kanitkar A, Davalos RV, Verbridge SS.

Cancer Lett. 2016 Sep 28;380(1):330-9. doi: 10.1016/j.canlet.2015.12.019. Epub 2015 Dec 24. Review.

17.

The Feasibility of a Smart Surgical Probe for Verification of IRE Treatments Using Electrical Impedance Spectroscopy.

Bonakdar M, Latouche EL, Mahajan RL, Davalos RV.

IEEE Trans Biomed Eng. 2015 Nov;62(11):2674-84. doi: 10.1109/TBME.2015.2441636. Epub 2015 Jun 4.

PMID:
26057529
18.

The vasculature in chronic adult periodontitis: a qualitative and quantitative study.

Bonakdar MP, Barber PM, Newman HN.

J Periodontol. 1997 Jan;68(1):50-8.

PMID:
9029452
19.

Can capillaries increase in length without any increase in the number of endothelial cells?

Bonakdar MP, Barber PM, Newman HN.

Med Hypotheses. 1996 Nov;47(5):383-8.

PMID:
8951802
20.

Chronic inhalation exposure to ozone and nitric acid elevates stress-inducible heat shock protein 70 in the rat lung.

Wong CG, Bonakdar M, Mautz WJ, Kleinman MT.

Toxicology. 1996 Feb 22;107(2):111-9.

PMID:
8599170
22.

"Placental polyp": light microscopic and immunohistochemical observations.

Lawrence WD, Qureshi F, Bonakdar MI.

Hum Pathol. 1988 Dec;19(12):1467-70.

PMID:
3192209
23.
24.

Sensitive measurements of warfarin by high-performance liquid chromatography with electrochemical detection.

Wang J, Bonakdar M.

J Chromatogr. 1987 Apr 10;415(2):432-7. No abstract available.

PMID:
3584385
25.

Sensitive adsorptive stripping voltammetric measurements of antihypertensive drugs.

Wang J, Tapia T, Bonakdar M.

Analyst. 1986 Nov;111(11):1245-8. No abstract available.

PMID:
3813034
26.

Liquid chromatography of reserpine and rescinnamine using electrochemical detection.

Wang J, Bonakdar M.

J Chromatogr. 1986 Oct 31;382:343-8. No abstract available.

PMID:
2878006
27.

Voltammetric measurement of tricyclic antidepressants following interfacial accumulation at carbon electrodes.

Wang J, Bonakdar M, Morgan C.

Anal Chem. 1986 May;58(6):1024-8. No abstract available.

PMID:
3717565
28.

Measurement of labetalol by high-performance liquid chromatography with electrochemical detection.

Wang J, Bonakdar M, Deshmukh BK.

J Chromatogr. 1985 Nov 8;344:412-5. No abstract available.

PMID:
4086567
29.

An inulin-like clearance based on the atomic absorbance of a copper cluster compound.

Bergevin GH, Red T, Bonakdar M, Pope S Jr, Wells F, Wright JR.

Physiol Chem Phys Med NMR. 1984;16(4):307-16.

PMID:
6522464
30.

Major gynecologic and obstetric surgery in Jehovah's Witnesses.

Bonakdar MI, Eckhous AW, Bacher BJ, Tabbilos RH, Peisner DB.

Obstet Gynecol. 1982 Nov;60(5):587-90.

PMID:
7145251
31.

Gonadoblastoma with a 45,XO karyotype.

Bonakdar MI, Peisner DB.

Obstet Gynecol. 1980 Dec;56(6):748-50.

PMID:
7443119

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