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Items: 39


The quail genome: insights into social behaviour, seasonal biology and infectious disease response.

Morris KM, Hindle MM, Boitard S, Burt DW, Danner AF, Eory L, Forrest HL, Gourichon D, Gros J, Hillier LW, Jaffredo T, Khoury H, Lansford R, Leterrier C, Loudon A, Mason AS, Meddle SL, Minvielle F, Minx P, Pitel F, Seiler JP, Shimmura T, Tomlinson C, Vignal A, Webster RG, Yoshimura T, Warren WC, Smith J.

BMC Biol. 2020 Feb 12;18(1):14. doi: 10.1186/s12915-020-0743-4.


Inference of Selection from Genetic Time Series Using Various Parametric Approximations to the Wright-Fisher Model.

Paris C, Servin B, Boitard S.

G3 (Bethesda). 2019 Dec 3;9(12):4073-4086. doi: 10.1534/g3.119.400778.


A guinea fowl genome assembly provides new evidence on evolution following domestication and selection in galliformes.

Vignal A, Boitard S, Thébault N, Dayo GK, Yapi-Gnaore V, Youssao Abdou Karim I, Berthouly-Salazar C, Pálinkás-Bodzsár N, Guémené D, Thibaud-Nissen F, Warren WC, Tixier-Boichard M, Rognon X.

Mol Ecol Resour. 2019 Jul;19(4):997-1014. doi: 10.1111/1755-0998.13017. Epub 2019 May 5.


An ABC Method for Whole-Genome Sequence Data: Inferring Paleolithic and Neolithic Human Expansions.

Jay F, Boitard S, Austerlitz F.

Mol Biol Evol. 2019 Jul 1;36(7):1565-1579. doi: 10.1093/molbev/msz038.


Brain renin-angiotensin system blockade with orally active aminopeptidase A inhibitor prevents cardiac dysfunction after myocardial infarction in mice.

Boitard SE, Marc Y, Keck M, Mougenot N, Agbulut O, Balavoine F, Llorens-Cortes C.

J Mol Cell Cardiol. 2019 Feb;127:215-222. doi: 10.1016/j.yjmcc.2018.12.008. Epub 2018 Dec 30.


The IICR and the non-stationary structured coalescent: towards demographic inference with arbitrary changes in population structure.

Rodríguez W, Mazet O, Grusea S, Arredondo A, Corujo JM, Boitard S, Chikhi L.

Heredity (Edinb). 2018 Dec;121(6):663-678. doi: 10.1038/s41437-018-0148-0. Epub 2018 Oct 7.


Coalescence times for three genes provide sufficient information to distinguish population structure from population size changes.

Grusea S, Rodríguez W, Pinchon D, Chikhi L, Boitard S, Mazet O.

J Math Biol. 2019 Jan;78(1-2):189-224. doi: 10.1007/s00285-018-1272-4. Epub 2018 Jul 20.


Identification of genomic regions and candidate genes for chicken meat ultimate pH by combined detection of selection signatures and QTL.

Bihan-Duval EL, Hennequet-Antier C, Berri C, Beauclercq SA, Bourin MC, Boulay M, Demeure O, Boitard S.

BMC Genomics. 2018 Apr 25;19(1):294. doi: 10.1186/s12864-018-4690-1.


Mapping QTL for white striping in relation to breast muscle yield and meat quality traits in broiler chickens.

Pampouille E, Berri C, Boitard S, Hennequet-Antier C, Beauclercq SA, Godet E, Praud C, Jégo Y, Le Bihan-Duval E.

BMC Genomics. 2018 Mar 20;19(1):202. doi: 10.1186/s12864-018-4598-9.


Meta-analysis of genome-wide association studies for cattle stature identifies common genes that regulate body size in mammals.

Bouwman AC, Daetwyler HD, Chamberlain AJ, Ponce CH, Sargolzaei M, Schenkel FS, Sahana G, Govignon-Gion A, Boitard S, Dolezal M, Pausch H, Brøndum RF, Bowman PJ, Thomsen B, Guldbrandtsen B, Lund MS, Servin B, Garrick DJ, Reecy J, Vilkki J, Bagnato A, Wang M, Hoff JL, Schnabel RD, Taylor JF, Vinkhuyzen AAE, Panitz F, Bendixen C, Holm LE, Gredler B, Hozé C, Boussaha M, Sanchez MP, Rocha D, Capitan A, Tribout T, Barbat A, Croiseau P, Drögemüller C, Jagannathan V, Vander Jagt C, Crowley JJ, Bieber A, Purfield DC, Berry DP, Emmerling R, Götz KU, Frischknecht M, Russ I, Sölkner J, Van Tassell CP, Fries R, Stothard P, Veerkamp RF, Boichard D, Goddard ME, Hayes BJ.

Nat Genet. 2018 Mar;50(3):362-367. doi: 10.1038/s41588-018-0056-5. Epub 2018 Feb 19.


The IICR (inverse instantaneous coalescence rate) as a summary of genomic diversity: insights into demographic inference and model choice.

Chikhi L, Rodríguez W, Grusea S, Santos P, Boitard S, Mazet O.

Heredity (Edinb). 2018 Jan;120(1):13-24. doi: 10.1038/s41437-017-0005-6. Epub 2017 Nov 8.


Accounting for linkage disequilibrium in genome scans for selection without individual genotypes: The local score approach.

Fariello MI, Boitard S, Mercier S, Robelin D, Faraut T, Arnould C, Recoquillay J, Bouchez O, Salin G, Dehais P, Gourichon D, Leroux S, Pitel F, Leterrier C, SanCristobal M.

Mol Ecol. 2017 Jul;26(14):3700-3714. doi: 10.1111/mec.14141. Epub 2017 May 21.


Signatures of local adaptation in lowland and highland teosintes from whole-genome sequencing of pooled samples.

Fustier MA, Brandenburg JT, Boitard S, Lapeyronnie J, Eguiarte LE, Vigouroux Y, Manicacci D, Tenaillon MI.

Mol Ecol. 2017 May;26(10):2738-2756. doi: 10.1111/mec.14082. Epub 2017 Mar 29.


Chitosan Hydrogels for the Regeneration of Infarcted Myocardium: Preparation, Physicochemical Characterization, and Biological Evaluation.

Fiamingo A, Montembault A, Boitard SE, Naemetalla H, Agbulut O, Delair T, Campana-Filho SP, Menasché P, David L.

Biomacromolecules. 2016 May 9;17(5):1662-72. doi: 10.1021/acs.biomac.6b00075. Epub 2016 Apr 25.


Uncovering Adaptation from Sequence Data: Lessons from Genome Resequencing of Four Cattle Breeds.

Boitard S, Boussaha M, Capitan A, Rocha D, Servin B.

Genetics. 2016 May;203(1):433-50. doi: 10.1534/genetics.115.181594. Epub 2016 Mar 26.


Inferring Population Size History from Large Samples of Genome-Wide Molecular Data - An Approximate Bayesian Computation Approach.

Boitard S, Rodríguez W, Jay F, Mona S, Austerlitz F.

PLoS Genet. 2016 Mar 4;12(3):e1005877. doi: 10.1371/journal.pgen.1005877. eCollection 2016 Mar.


Nanofibrous clinical-grade collagen scaffolds seeded with human cardiomyocytes induces cardiac remodeling in dilated cardiomyopathy.

Joanne P, Kitsara M, Boitard SE, Naemetalla H, Vanneaux V, Pernot M, Larghero J, Forest P, Chen Y, Menasché P, Agbulut O.

Biomaterials. 2016 Feb;80:157-168. doi: 10.1016/j.biomaterials.2015.11.035. Epub 2015 Dec 2.


On the importance of being structured: instantaneous coalescence rates and human evolution--lessons for ancestral population size inference?

Mazet O, Rodríguez W, Grusea S, Boitard S, Chikhi L.

Heredity (Edinb). 2016 Apr;116(4):362-71. doi: 10.1038/hdy.2015.104. Epub 2015 Dec 9.


Genomic Signature of Selective Sweeps Illuminates Adaptation of Medicago truncatula to Root-Associated Microorganisms.

Bonhomme M, Boitard S, San Clemente H, Dumas B, Young N, Jacquet C.

Mol Biol Evol. 2015 Aug;32(8):2097-110. doi: 10.1093/molbev/msv092. Epub 2015 Apr 21.


Combined QTL and selective sweep mappings with coding SNP annotation and cis-eQTL analysis revealed PARK2 and JAG2 as new candidate genes for adiposity regulation.

Roux PF, Boitard S, Blum Y, Parks B, Montagner A, Mouisel E, Djari A, Esquerré D, Désert C, Boutin M, Leroux S, Lecerf F, Le Bihan-Duval E, Klopp C, Servin B, Pitel F, Duclos MJ, Guillou H, Lusis AJ, Demeure O, Lagarrigue S.

G3 (Bethesda). 2015 Feb 3;5(4):517-29. doi: 10.1534/g3.115.016865.


Selection signatures in worldwide sheep populations.

Fariello MI, Servin B, Tosser-Klopp G, Rupp R, Moreno C; International Sheep Genomics Consortium, San Cristobal M, Boitard S.

PLoS One. 2014 Aug 15;9(8):e103813. doi: 10.1371/journal.pone.0103813. eCollection 2014.


Functional investigation of a QTL affecting resistance to Haemonchus contortus in sheep.

Sallé G, Moreno C, Boitard S, Ruesche J, Tircazes-Secula A, Bouvier F, Aletru M, Weisbecker JL, Prévot F, Bergeaud JP, Trumel C, Grisez C, Liénard E, Jacquiet P.

Vet Res. 2014 Jun 17;45:68. doi: 10.1186/1297-9716-45-68.


Skeletal muscle glycogen phosphorylase is irreversibly inhibited by mercury: molecular, cellular and kinetic aspects.

Xu X, Mathieu C, Boitard SE, Dairou J, Dupret JM, Agbulut O, Rodrigues-Lima F.

FEBS Lett. 2014 Jan 3;588(1):138-42. doi: 10.1016/j.febslet.2013.11.021. Epub 2013 Nov 21.


Genome-wide linkage disequilibrium in the Blonde d'Aquitaine cattle breed.

Beghain J, Boitard S, Weiss B, Boussaha M, Gut I, Rocha D.

J Anim Breed Genet. 2013 Aug;130(4):294-302. doi: 10.1111/j.1439-0388.2012.01020.x. Epub 2012 Aug 17.


Efficacy of epicardially delivered adipose stroma cell sheets in dilated cardiomyopathy.

Hamdi H, Boitard SE, Planat-Benard V, Pouly J, Neamatalla H, Joanne P, Perier MC, Bellamy V, Casteilla L, Li Z, Hagège AA, Mericskay M, Menasché P, Agbulut O.

Cardiovasc Res. 2013 Sep 1;99(4):640-7. doi: 10.1093/cvr/cvt149. Epub 2013 Jun 13.


Detection of signatures of selective sweeps in the Blonde d'Aquitaine cattle breed.

Boitard S, Rocha D.

Anim Genet. 2013 Aug;44(5):579-83. doi: 10.1111/age.12042. Epub 2013 May 6.


Pool-hmm: a Python program for estimating the allele frequency spectrum and detecting selective sweeps from next generation sequencing of pooled samples.

Boitard S, Kofler R, Françoise P, Robelin D, Schlötterer C, Futschik A.

Mol Ecol Resour. 2013 Mar;13(2):337-40. doi: 10.1111/1755-0998.12063. Epub 2013 Jan 11.


Detecting signatures of selection through haplotype differentiation among hierarchically structured populations.

Fariello MI, Boitard S, Naya H, SanCristobal M, Servin B.

Genetics. 2013 Mar;193(3):929-41. doi: 10.1534/genetics.112.147231. Epub 2013 Jan 10.


Detecting selective sweeps from pooled next-generation sequencing samples.

Boitard S, Schlötterer C, Nolte V, Pandey RV, Futschik A.

Mol Biol Evol. 2012 Sep;29(9):2177-86. doi: 10.1093/molbev/mss090. Epub 2012 Mar 12.


Genome-wide analysis of the world's sheep breeds reveals high levels of historic mixture and strong recent selection.

Kijas JW, Lenstra JA, Hayes B, Boitard S, Porto Neto LR, San Cristobal M, Servin B, McCulloch R, Whan V, Gietzen K, Paiva S, Barendse W, Ciani E, Raadsma H, McEwan J, Dalrymple B; International Sheep Genomics Consortium Members.

PLoS Biol. 2012 Feb;10(2):e1001258. doi: 10.1371/journal.pbio.1001258. Epub 2012 Feb 7.


Epilepsy caused by an abnormal alternative splicing with dosage effect of the SV2A gene in a chicken model.

Douaud M, Feve K, Pituello F, Gourichon D, Boitard S, Leguern E, Coquerelle G, Vieaud A, Batini C, Naquet R, Vignal A, Tixier-Boichard M, Pitel F.

PLoS One. 2011;6(10):e26932. doi: 10.1371/journal.pone.0026932. Epub 2011 Oct 27.


Sparse PLS discriminant analysis: biologically relevant feature selection and graphical displays for multiclass problems.

Lê Cao KA, Boitard S, Besse P.

BMC Bioinformatics. 2011 Jun 22;12:253. doi: 10.1186/1471-2105-12-253.


Genetic characterization of the Blonde d'Aquitaine cattle breed using microsatellite markers and relationship with three other French cattle populations.

Amigues Y, Boitard S, Bertrand C, Sancristobal M, Rocha D.

J Anim Breed Genet. 2011 Jun;128(3):201-8. doi: 10.1111/j.1439-0388.2010.00890.x. Epub 2011 Jan 12.


Detecting selection in population trees: the Lewontin and Krakauer test extended.

Bonhomme M, Chevalet C, Servin B, Boitard S, Abdallah J, Blott S, Sancristobal M.

Genetics. 2010 Sep;186(1):241-62. doi: 10.1534/genetics.104.117275.


Genetic variability, structure and assignment of Spanish and French pig populations based on a large sampling.

Boitard S, Chevalet C, Mercat MJ, Meriaux JC, Sanchez A, Tibau J, Sancristobal M.

Anim Genet. 2010 Dec;41(6):608-18. doi: 10.1111/j.1365-2052.2010.02061.x.


Asymptotic distribution of the "orthogonal" quantitative transmission disequilibrium test in a structured population: exact formula.

Boitard S, Mangin B, Azaïs JM.

Stat Appl Genet Mol Biol. 2010;9:Article 11. doi: 10.2202/1544-6115.1521. Epub 2010 Jan 26.


Detecting selective sweeps: a new approach based on hidden markov models.

Boitard S, Schlötterer C, Futschik A.

Genetics. 2009 Apr;181(4):1567-78. doi: 10.1534/genetics.108.100032. Epub 2009 Feb 9.


Probability distribution of haplotype frequencies under the two-locus Wright-Fisher model by diffusion approximation.

Boitard S, Loisel P.

Theor Popul Biol. 2007 May;71(3):380-91. Epub 2007 Jan 20.


Linkage disequilibrium interval mapping of quantitative trait loci.

Boitard S, Abdallah J, de Rochambeau H, Cierco-Ayrolles C, Mangin B.

BMC Genomics. 2006 Mar 16;7:54.

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