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Metabolic Adjustment of Arabidopsis Root Suspension Cells During Adaptation to Salt Stress and Mitotic Stress Memory.

Chun HJ, Baek D, Cho HM, Jung HS, Jeong MS, Jung WH, Choi CW, Lee SH, Jin BJ, Park MS, Kim HJ, Chung WS, Lee SY, Bohnert HJ, Bressan RA, Yun DJ, Hong YS, Kim MC.

Plant Cell Physiol. 2019 Mar 1;60(3):612-625. doi: 10.1093/pcp/pcy231.


A comprehensive analysis of the Korean fir (Abies koreana) genes expressed under heat stress using transcriptome analysis.

Hwang JE, Kim YJ, Shin MH, Hyun HJ, Bohnert HJ, Park HC.

Sci Rep. 2018 Jul 6;8(1):10233. doi: 10.1038/s41598-018-28552-1.


A Single Amino-Acid Substitution in the Sodium Transporter HKT1 Associated with Plant Salt Tolerance.

Ali A, Raddatz N, Aman R, Kim S, Park HC, Jan M, Baek D, Khan IU, Oh DH, Lee SY, Bressan RA, Lee KW, Maggio A, Pardo JM, Bohnert HJ, Yun DJ.

Plant Physiol. 2016 Jul;171(3):2112-26. doi: 10.1104/pp.16.00569. Epub 2016 May 9.


A novel thiol-reductase activity of Arabidopsis YUC6 confers drought tolerance independently of auxin biosynthesis.

Cha JY, Kim WY, Kang SB, Kim JI, Baek D, Jung IJ, Kim MR, Li N, Kim HJ, Nakajima M, Asami T, Sabir JS, Park HC, Lee SY, Bohnert HJ, Bressan RA, Pardo JM, Yun DJ.

Nat Commun. 2015 Aug 28;6:8041. doi: 10.1038/ncomms9041.


Cell type-specific responses to salinity - the epidermal bladder cell transcriptome of Mesembryanthemum crystallinum.

Oh DH, Barkla BJ, Vera-Estrella R, Pantoja O, Lee SY, Bohnert HJ, Dassanayake M.

New Phytol. 2015 Aug;207(3):627-44. doi: 10.1111/nph.13414. Epub 2015 May 5.


AtGGM2014, an Arabidopsis gene co-expression network for functional studies.

Ma S, Bohnert HJ, Dinesh-Kumar SP.

Sci China Life Sci. 2015 Mar;58(3):276-86. doi: 10.1007/s11427-015-4803-x. Epub 2015 Feb 14.


Pathogen associated molecular pattern (PAMP)-triggered immunity is compromised under C-limited growth.

Park HC, Lee S, Park B, Choi W, Kim C, Lee S, Chung WS, Lee SY, Sabir J, Bressan RA, Bohnert HJ, Mengiste T, Yun DJ.

Mol Cells. 2015 Jan 31;38(1):40-50. doi: 10.14348/molcells.2015.2165. Epub 2014 Nov 12.


Genome structures and transcriptomes signify niche adaptation for the multiple-ion-tolerant extremophyte Schrenkiella parvula.

Oh DH, Hong H, Lee SY, Yun DJ, Bohnert HJ, Dassanayake M.

Plant Physiol. 2014 Apr;164(4):2123-38. doi: 10.1104/pp.113.233551. Epub 2014 Feb 21.


Incorporating motif analysis into gene co-expression networks reveals novel modular expression pattern and new signaling pathways.

Ma S, Shah S, Bohnert HJ, Snyder M, Dinesh-Kumar SP.

PLoS Genet. 2013;9(10):e1003840. doi: 10.1371/journal.pgen.1003840. Epub 2013 Oct 3.


Using Arabidopsis-related model species (ARMS): growth, genetic transformation, and comparative genomics.

Batelli G, Oh DH, D'Urzo MP, Orsini F, Dassanayake M, Zhu JK, Bohnert HJ, Bressan RA, Maggio A.

Methods Mol Biol. 2014;1062:27-51. doi: 10.1007/978-1-62703-580-4_2.


Release of SOS2 kinase from sequestration with GIGANTEA determines salt tolerance in Arabidopsis.

Kim WY, Ali Z, Park HJ, Park SJ, Cha JY, Perez-Hormaeche J, Quintero FJ, Shin G, Kim MR, Qiang Z, Ning L, Park HC, Lee SY, Bressan RA, Pardo JM, Bohnert HJ, Yun DJ.

Nat Commun. 2013;4:1352. doi: 10.1038/ncomms2357. Erratum in: Nat Commun. 2013;4:1820.


Regulation of miR399f transcription by AtMYB2 affects phosphate starvation responses in Arabidopsis.

Baek D, Kim MC, Chun HJ, Kang S, Park HC, Shin G, Park J, Shen M, Hong H, Kim WY, Kim DH, Lee SY, Bressan RA, Bohnert HJ, Yun DJ.

Plant Physiol. 2013 Jan;161(1):362-73. doi: 10.1104/pp.112.205922. Epub 2012 Nov 15.


Overexpression of Arabidopsis YUCCA6 in potato results in high-auxin developmental phenotypes and enhanced resistance to water deficit.

Kim JI, Baek D, Park HC, Chun HJ, Oh DH, Lee MK, Cha JY, Kim WY, Kim MC, Chung WS, Bohnert HJ, Lee SY, Bressan RA, Lee SW, Yun DJ.

Mol Plant. 2013 Mar;6(2):337-49. doi: 10.1093/mp/sss100. Epub 2012 Sep 17.


Discovery of stress responsive DNA regulatory motifs in Arabidopsis.

Ma S, Bachan S, Porto M, Bohnert HJ, Snyder M, Dinesh-Kumar SP.

PLoS One. 2012;7(8):e43198. doi: 10.1371/journal.pone.0043198. Epub 2012 Aug 13.


Insights into salt tolerance from the genome of Thellungiella salsuginea.

Wu HJ, Zhang Z, Wang JY, Oh DH, Dassanayake M, Liu B, Huang Q, Sun HX, Xia R, Wu Y, Wang YN, Yang Z, Liu Y, Zhang W, Zhang H, Chu J, Yan C, Fang S, Zhang J, Wang Y, Zhang F, Wang G, Lee SY, Cheeseman JM, Yang B, Li B, Min J, Yang L, Wang J, Chu C, Chen SY, Bohnert HJ, Zhu JK, Wang XJ, Xie Q.

Proc Natl Acad Sci U S A. 2012 Jul 24;109(30):12219-24. doi: 10.1073/pnas.1209954109. Epub 2012 Jul 9.


Life at the extreme: lessons from the genome.

Oh DH, Dassanayake M, Bohnert HJ, Cheeseman JM.

Genome Biol. 2012;13(3):241. doi: 10.1186/gb-2012-13-3-241. Review.


TsHKT1;2, a HKT1 homolog from the extremophile Arabidopsis relative Thellungiella salsuginea, shows K(+) specificity in the presence of NaCl.

Ali Z, Park HC, Ali A, Oh DH, Aman R, Kropornicka A, Hong H, Choi W, Chung WS, Kim WY, Bressan RA, Bohnert HJ, Lee SY, Yun DJ.

Plant Physiol. 2012 Mar;158(3):1463-74. doi: 10.1104/pp.111.193110. Epub 2012 Jan 11.


SUMO and SUMOylation in plants.

Park HJ, Kim WY, Park HC, Lee SY, Bohnert HJ, Yun DJ.

Mol Cells. 2011 Oct;32(4):305-16. doi: 10.1007/s10059-011-0122-7. Epub 2011 Sep 9. Review.


The genome of the extremophile crucifer Thellungiella parvula.

Dassanayake M, Oh DH, Haas JS, Hernandez A, Hong H, Ali S, Yun DJ, Bressan RA, Zhu JK, Bohnert HJ, Cheeseman JM.

Nat Genet. 2011 Aug 7;43(9):913-8. doi: 10.1038/ng.889.


Identification and molecular properties of SUMO-binding proteins in Arabidopsis.

Park HC, Choi W, Park HJ, Cheong MS, Koo YD, Shin G, Chung WS, Kim WY, Kim MG, Bressan RA, Bohnert HJ, Lee SY, Yun DJ.

Mol Cells. 2011 Aug;32(2):143-51. doi: 10.1007/s10059-011-2297-3. Epub 2011 May 20.


NKS1, Na(+)- and K(+)-sensitive 1, regulates ion homeostasis in an SOS-independent pathway in Arabidopsis.

Choi W, Baek D, Oh DH, Park J, Hong H, Kim WY, Bohnert HJ, Bressan RA, Park HC, Yun DJ.

Phytochemistry. 2011 Apr;72(4-5):330-6. doi: 10.1016/j.phytochem.2010.12.005. Epub 2011 Jan 10.


SIZ1 regulation of phosphate starvation-induced root architecture remodeling involves the control of auxin accumulation.

Miura K, Lee J, Gong Q, Ma S, Jin JB, Yoo CY, Miura T, Sato A, Bohnert HJ, Hasegawa PM.

Plant Physiol. 2011 Feb;155(2):1000-12. doi: 10.1104/pp.110.165191. Epub 2010 Dec 14.


Transcription strength and halophytic lifestyle.

Dassanayake M, Oh DH, Hong H, Bohnert HJ, Cheeseman JM.

Trends Plant Sci. 2011 Jan;16(1):1-3. doi: 10.1016/j.tplants.2010.10.006. Epub 2010 Nov 18. No abstract available.


Genome structures and halophyte-specific gene expression of the extremophile Thellungiella parvula in comparison with Thellungiella salsuginea (Thellungiella halophila) and Arabidopsis.

Oh DH, Dassanayake M, Haas JS, Kropornika A, Wright C, d'Urzo MP, Hong H, Ali S, Hernandez A, Lambert GM, Inan G, Galbraith DW, Bressan RA, Yun DJ, Zhu JK, Cheeseman JM, Bohnert HJ.

Plant Physiol. 2010 Nov;154(3):1040-52. doi: 10.1104/pp.110.163923. Epub 2010 Sep 10.


A comparative study of salt tolerance parameters in 11 wild relatives of Arabidopsis thaliana.

Orsini F, D'Urzo MP, Inan G, Serra S, Oh DH, Mickelbart MV, Consiglio F, Li X, Jeong JC, Yun DJ, Bohnert HJ, Bressan RA, Maggio A.

J Exp Bot. 2010 Aug;61(13):3787-98. doi: 10.1093/jxb/erq188. Epub 2010 Jul 1.


Sulphate as a xylem-borne chemical signal precedes the expression of ABA biosynthetic genes in maize roots.

Ernst L, Goodger JQ, Alvarez S, Marsh EL, Berla B, Lockhart E, Jung J, Li P, Bohnert HJ, Schachtman DP.

J Exp Bot. 2010 Jul;61(12):3395-405. doi: 10.1093/jxb/erq160. Epub 2010 Jun 21.


Functional characterization of the SIZ/PIAS-type SUMO E3 ligases, OsSIZ1 and OsSIZ2 in rice.

Park HC, Kim H, Koo SC, Park HJ, Cheong MS, Hong H, Baek D, Chung WS, Kim DH, Bressan RA, Lee SY, Bohnert HJ, Yun DJ.

Plant Cell Environ. 2010 Nov;33(11):1923-34. doi: 10.1111/j.1365-3040.2010.02195.x.


Consequences of SOS1 deficiency: intracellular physiology and transcription.

Oh DH, Ali Z, Hyeong CP, Bressan RA, Dae JY, Bohnert HJ.

Plant Signal Behav. 2010 Jun;5(6):766-8. doi: 10.1093/jxb/erp391.. Epub 2010 Jun 1.


Structural and functional studies of SIZ1, a PIAS-type SUMO E3 ligase from Arabidopsis.

Cheong MS, Park HC, Bohnert HJ, Bressan RA, Yun DJ.

Plant Signal Behav. 2010 May;5(5):567-9. doi: 10.4161/psb.11426. Epub 2010 Apr 20.


Comparative transcriptomics for mangrove species: an expanding resource.

Dassanayake M, Haas JS, Bohnert HJ, Cheeseman JM.

Funct Integr Genomics. 2010 Nov;10(4):523-32. doi: 10.1007/s10142-009-0156-5. Epub 2010 Jan 27.


Intracellular consequences of SOS1 deficiency during salt stress.

Oh DH, Lee SY, Bressan RA, Yun DJ, Bohnert HJ.

J Exp Bot. 2010 Feb;61(4):1205-13. doi: 10.1093/jxb/erp391. Epub 2010 Jan 6.


SOS1 and halophytism.

Oh DH, Zahir A, Yun DJ, Bressan RA, Bohnert HJ.

Plant Signal Behav. 2009 Nov;4(11):1081-3. Epub 2009 Nov 11.


Specific domain structures control abscisic acid-, salicylic acid-, and stress-mediated SIZ1 phenotypes.

Cheong MS, Park HC, Hong MJ, Lee J, Choi W, Jin JB, Bohnert HJ, Lee SY, Bressan RA, Yun DJ.

Plant Physiol. 2009 Dec;151(4):1930-42. doi: 10.1104/pp.109.143719. Epub 2009 Oct 16.


The Arabidopsis RESURRECTION1 gene regulates a novel antagonistic interaction in plant defense to biotrophs and necrotrophs.

Mang HG, Laluk KA, Parsons EP, Kosma DK, Cooper BR, Park HC, AbuQamar S, Boccongelli C, Miyazaki S, Consiglio F, Chilosi G, Bohnert HJ, Bressan RA, Mengiste T, Jenks MA.

Plant Physiol. 2009 Sep;151(1):290-305. doi: 10.1104/pp.109.142158. Epub 2009 Jul 22.


Loss of halophytism by interference with SOS1 expression.

Oh DH, Leidi E, Zhang Q, Hwang SM, Li Y, Quintero FJ, Jiang X, D'Urzo MP, Lee SY, Zhao Y, Bahk JD, Bressan RA, Yun DJ, Pardo JM, Bohnert HJ.

Plant Physiol. 2009 Sep;151(1):210-22. doi: 10.1104/pp.109.137802. Epub 2009 Jul 1.


Shedding light on an extremophile lifestyle through transcriptomics.

Dassanayake M, Haas JS, Bohnert HJ, Cheeseman JM.

New Phytol. 2009 Aug;183(3):764-75. doi: 10.1111/j.1469-8137.2009.02913.x. Epub 2009 Jun 22.


Transcriptome pathways unique to dehydration tolerant relatives of modern wheat.

Ergen NZ, Thimmapuram J, Bohnert HJ, Budak H.

Funct Integr Genomics. 2009 Aug;9(3):377-96. doi: 10.1007/s10142-009-0123-1. Epub 2009 Mar 28.


Arabidopsis transcript and metabolite profiles: ecotype-specific responses to open-air elevated [CO2].

Li P, Ainsworth EA, Leakey AD, Ulanov A, Lozovaya V, Ort DR, Bohnert HJ.

Plant Cell Environ. 2008 Nov;31(11):1673-87. doi: 10.1111/j.1365-3040.2008.01874.x. Epub 2008 Sep 16.


Physiological and molecular adaptations to drought in Andean potato genotypes.

Vasquez-Robinet C, Mane SP, Ulanov AV, Watkinson JI, Stromberg VK, De Koeyer D, Schafleitner R, Willmot DB, Bonierbale M, Bohnert HJ, Grene R.

J Exp Bot. 2008;59(8):2109-23. doi: 10.1093/jxb/ern073.


Gene networks in Arabidopsis thaliana for metabolic and environmental functions.

Ma S, Bohnert HJ.

Mol Biosyst. 2008 Mar;4(3):199-204. doi: 10.1039/b715811b. Epub 2008 Jan 9.


Coexpression characteristics of trehalose-6-phosphate phosphatase subfamily genes reveal different functions in a network context.

Li P, Ma S, Bohnert HJ.

Physiol Plant. 2008 Jul;133(3):544-56. doi: 10.1111/j.1399-3054.2008.01101.x. Epub 2008 Jul 1.


Spatial distribution of transcript changes in the maize primary root elongation zone at low water potential.

Spollen WG, Tao W, Valliyodan B, Chen K, Hejlek LG, Kim JJ, Lenoble ME, Zhu J, Bohnert HJ, Henderson D, Schachtman DP, Davis GE, Springer GK, Sharp RE, Nguyen HT.

BMC Plant Biol. 2008 Apr 3;8:32. doi: 10.1186/1471-2229-8-32.


Involvement of Arabidopsis HOS15 in histone deacetylation and cold tolerance.

Zhu J, Jeong JC, Zhu Y, Sokolchik I, Miyazaki S, Zhu JK, Hasegawa PM, Bohnert HJ, Shi H, Yun DJ, Bressan RA.

Proc Natl Acad Sci U S A. 2008 Mar 25;105(12):4945-50. doi: 10.1073/pnas.0801029105. Epub 2008 Mar 20.


A carboxysomal carbon-concentrating mechanism in the cyanelles of the 'coelacanth' of the algal world, Cyanophora paradoxa?

Fathinejad S, Steiner JM, Reipert S, Marchetti M, Allmaier G, Burey SC, Ohnishi N, Fukuzawa H, Löffelhardt W, Bohnert HJ.

Physiol Plant. 2008 May;133(1):27-32. doi: 10.1111/j.1399-3054.2007.01030.x. Epub 2008 Jan 30. Review.


Tuber development phenotypes in adapted and acclimated, drought-stressed Solanum tuberosum ssp. andigena have distinct expression profiles of genes associated with carbon metabolism.

Watkinson JI, Hendricks L, Sioson AA, Heath LS, Bohnert HJ, Grene R.

Plant Physiol Biochem. 2008 Jan;46(1):34-45. Epub 2007 Oct 26.


An Arabidopsis gene network based on the graphical Gaussian model.

Ma S, Gong Q, Bohnert HJ.

Genome Res. 2007 Nov;17(11):1614-25. Epub 2007 Oct 5.


Acclimation to low [CO(2)] by an inorganic carbon-concentrating mechanism in Cyanophora paradoxa.

Burey SC, Poroyko V, Ergen ZN, Fathi-Nejad S, Schüller C, Ohnishi N, Fukuzawa H, Bohnert HJ, Löffelhardt W.

Plant Cell Environ. 2007 Nov;30(11):1422-35.


yucca6, a dominant mutation in Arabidopsis, affects auxin accumulation and auxin-related phenotypes.

Kim JI, Sharkhuu A, Jin JB, Li P, Jeong JC, Baek D, Lee SY, Blakeslee JJ, Murphy AS, Bohnert HJ, Hasegawa PM, Yun DJ, Bressan RA.

Plant Physiol. 2007 Nov;145(3):722-35. Epub 2007 Sep 20.


All about FACE--plants in a high-[CO2] world.

Li P, Bohnert HJ, Grene R.

Trends Plant Sci. 2007 Mar;12(3):87-9. Epub 2007 Feb 5. No abstract available.


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