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Items: 1 to 50 of 200

1.

Complete Chloroplast Genome Sequence of an Engelmann Spruce (Picea engelmannii, Genotype Se404-851) from Western Canada.

Lin D, Coombe L, Jackman SD, Gagalova KK, Warren RL, Hammond SA, McDonald H, Kirk H, Pandoh P, Zhao Y, Moore RA, Mungall AJ, Ritland C, Doerksen T, Jaquish B, Bousquet J, Jones SJM, Bohlmann J, Birol I.

Microbiol Resour Announc. 2019 Jun 13;8(24). pii: e00382-19. doi: 10.1128/MRA.00382-19.

2.

Oleoresin defenses in conifers: chemical diversity, terpene synthases, limitations of oleoresin defense under climate change.

Celedon JM, Bohlmann J.

New Phytol. 2019 Jun 10. doi: 10.1111/nph.15984. [Epub ahead of print] Review.

PMID:
31179548
3.

Complete Chloroplast Genome Sequence of a White Spruce (Picea glauca, Genotype WS77111) from Eastern Canada.

Lin D, Coombe L, Jackman SD, Gagalova KK, Warren RL, Hammond SA, Kirk H, Pandoh P, Zhao Y, Moore RA, Mungall AJ, Ritland C, Jaquish B, Isabel N, Bousquet J, Jones SJM, Bohlmann J, Birol I.

Microbiol Resour Announc. 2019 Jun 6;8(23). pii: e00381-19. doi: 10.1128/MRA.00381-19.

4.

ntEdit: scalable genome sequence polishing.

Warren RL, Coombe L, Mohamadi H, Zhang J, Jaquish B, Isabel N, Jones SJM, Bousquet J, Bohlmann J, Birol I.

Bioinformatics. 2019 May 16. pii: btz400. doi: 10.1093/bioinformatics/btz400. [Epub ahead of print]

PMID:
31095290
5.

Terpenes in Cannabis sativa - From plant genome to humans.

Booth JK, Bohlmann J.

Plant Sci. 2019 Jul;284:67-72. doi: 10.1016/j.plantsci.2019.03.022. Epub 2019 Apr 4. Review.

6.

Functions of mountain pine beetle cytochromes P450 CYP6DJ1, CYP6BW1 and CYP6BW3 in the oxidation of pine monoterpenes and diterpene resin acids.

Chiu CC, Keeling CI, Henderson HM, Bohlmann J.

PLoS One. 2019 May 9;14(5):e0216753. doi: 10.1371/journal.pone.0216753. eCollection 2019.

7.

A Molecular and Genomic Reference System for Conifer Defense against Insects.

Whitehill JGA, Bohlmann J.

Plant Cell Environ. 2019 May 1. doi: 10.1111/pce.13571. [Epub ahead of print]

PMID:
31042808
8.

Flavonol biosynthesis genes and their use in a synthetic biology approach to engineering the plant antidiabetic metabolite montbretin A.

Irmisch S, Ruebsam H, Jancsik S, Yuen MMS, Madilao L, Bohlmann J.

Plant Physiol. 2019 Apr 19. pii: pp.00254.2019. doi: 10.1104/pp.19.00254. [Epub ahead of print]

9.

The cytochrome P450 CYP6DE1 catalyzes the conversion of α-pinene into the mountain pine beetle aggregation pheromone trans-verbenol.

Chiu CC, Keeling CI, Bohlmann J.

Sci Rep. 2019 Feb 6;9(1):1477. doi: 10.1038/s41598-018-38047-8.

10.

Population sequencing reveals clonal diversity and ancestral inbreeding in the grapevine cultivar Chardonnay.

Roach MJ, Johnson DL, Bohlmann J, van Vuuren HJJ, Jones SJM, Pretorius IS, Schmidt SA, Borneman AR.

PLoS Genet. 2018 Nov 20;14(11):e1007807. doi: 10.1371/journal.pgen.1007807. eCollection 2018 Nov.

11.

Tigmint: correcting assembly errors using linked reads from large molecules.

Jackman SD, Coombe L, Chu J, Warren RL, Vandervalk BP, Yeo S, Xue Z, Mohamadi H, Bohlmann J, Jones SJM, Birol I.

BMC Bioinformatics. 2018 Oct 26;19(1):393. doi: 10.1186/s12859-018-2425-6.

12.

Functions of stone cells and oleoresin terpenes in the conifer defense syndrome.

Whitehill JGA, Yuen MMS, Henderson H, Madilao L, Kshatriya K, Bryan J, Jaquish B, Bohlmann J.

New Phytol. 2019 Feb;221(3):1503-1517. doi: 10.1111/nph.15477. Epub 2018 Oct 23.

PMID:
30216451
13.

Contribution of isopentenyl phosphate to plant terpenoid metabolism.

Henry LK, Thomas ST, Widhalm JR, Lynch JH, Davis TC, Kessler SA, Bohlmann J, Noel JP, Dudareva N.

Nat Plants. 2018 Sep;4(9):721-729. doi: 10.1038/s41477-018-0220-z. Epub 2018 Aug 20.

PMID:
30127411
14.

Cytochromes P450 Preferentially Expressed in Antennae of the Mountain Pine Beetle.

Chiu CC, Keeling CI, Bohlmann J.

J Chem Ecol. 2019 Feb;45(2):178-186. doi: 10.1007/s10886-018-0999-0. Epub 2018 Jul 25.

PMID:
30043088
15.

Discovery of UDP-Glycosyltransferases and BAHD-Acyltransferases Involved in the Biosynthesis of the Antidiabetic Plant Metabolite Montbretin A.

Irmisch S, Jo S, Roach CR, Jancsik S, Man Saint Yuen M, Madilao LL, O'Neil-Johnson M, Williams R, Withers SG, Bohlmann J.

Plant Cell. 2018 Aug;30(8):1864-1886. doi: 10.1105/tpc.18.00406. Epub 2018 Jul 2.

16.

Monoterpenyl esters in juvenile mountain pine beetle and sex-specific release of the aggregation pheromone trans-verbenol.

Chiu CC, Keeling CI, Bohlmann J.

Proc Natl Acad Sci U S A. 2018 Apr 3;115(14):3652-3657. doi: 10.1073/pnas.1722380115. Epub 2018 Mar 19.

17.

Discovery, Biosynthesis and Stress-Related Accumulation of Dolabradiene-Derived Defenses in Maize.

Mafu S, Ding Y, Murphy KM, Yaacoobi O, Addison JB, Wang Q, Shen Z, Briggs SP, Bohlmann J, Castro-Falcon G, Hughes CC, Betsiashvili M, Huffaker A, Schmelz EA, Zerbe P.

Plant Physiol. 2018 Apr;176(4):2677-2690. doi: 10.1104/pp.17.01351. Epub 2018 Feb 23.

18.

Evolution of the biosynthesis of two hydroxyacetophenones in plants.

Parent GJ, Giguère I, Mageroy M, Bohlmann J, MacKay JJ.

Plant Cell Environ. 2018 Mar;41(3):620-629. doi: 10.1111/pce.13134. Epub 2018 Jan 29.

PMID:
29314043
19.

Cell-type- and tissue-specific transcriptomes of the white spruce (Picea glauca) bark unmask fine-scale spatial patterns of constitutive and induced conifer defense.

Celedon JM, Yuen MMS, Chiang A, Henderson H, Reid KE, Bohlmann J.

Plant J. 2017 Nov;92(4):710-726. doi: 10.1111/tpj.13673. Epub 2017 Sep 28.

20.

Toxicity of Pine Monoterpenes to Mountain Pine Beetle.

Chiu CC, Keeling CI, Bohlmann J.

Sci Rep. 2017 Aug 18;7(1):8858. doi: 10.1038/s41598-017-08983-y.

21.

A Conifer UDP-Sugar Dependent Glycosyltransferase Contributes to Acetophenone Metabolism and Defense against Insects.

Mageroy MH, Jancsik S, Man Saint Yuen M, Fischer M, Withers SG, Paetz C, Schneider B, Mackay J, Bohlmann J.

Plant Physiol. 2017 Oct;175(2):641-651. doi: 10.1104/pp.17.00611. Epub 2017 Aug 9.

22.

In vivo function of Pgβglu-1 in the release of acetophenones in white spruce.

Mageroy MH, Lachance D, Jancsik S, Parent G, Séguin A, Mackay J, Bohlmann J.

PeerJ. 2017 Jul 7;5:e3535. doi: 10.7717/peerj.3535. eCollection 2017.

23.

An extended model of heartwood secondary metabolism informed by functional genomics.

Celedon JM, Bohlmann J.

Tree Physiol. 2018 Mar 1;38(3):311-319. doi: 10.1093/treephys/tpx070. Review.

PMID:
28633414
24.

Sesquiterpene Variation in West Australian Sandalwood (Santalum spicatum).

Moniodis J, Jones CG, Renton M, Plummer JA, Barbour EL, Ghisalberti EL, Bohlmann J.

Molecules. 2017 Jun 6;22(6). pii: E940. doi: 10.3390/molecules22060940.

25.

Terpene synthases from Cannabis sativa.

Booth JK, Page JE, Bohlmann J.

PLoS One. 2017 Mar 29;12(3):e0173911. doi: 10.1371/journal.pone.0173911. eCollection 2017.

26.

Biosynthesis of the microtubule-destabilizing diterpene pseudolaric acid B from golden larch involves an unusual diterpene synthase.

Mafu S, Karunanithi PS, Palazzo TA, Harrod BL, Rodriguez SM, Mollhoff IN, O'Brien TE, Tong S, Fiehn O, Tantillo DJ, Bohlmann J, Zerbe P.

Proc Natl Acad Sci U S A. 2017 Jan 31;114(5):974-979. doi: 10.1073/pnas.1612901114. Epub 2017 Jan 17.

27.

A high-resolution reference genetic map positioning 8.8 K genes for the conifer white spruce: structural genomics implications and correspondence with physical distance.

Pavy N, Lamothe M, Pelgas B, Gagnon F, Birol I, Bohlmann J, Mackay J, Isabel N, Bousquet J.

Plant J. 2017 Apr;90(1):189-203. doi: 10.1111/tpj.13478. Epub 2017 Mar 6.

28.

Biosynthesis of the psychotropic plant diterpene salvinorin A: Discovery and characterization of the Salvia divinorum clerodienyl diphosphate synthase.

Pelot KA, Mitchell R, Kwon M, Hagelthorn DM, Wardman JF, Chiang A, Bohlmann J, Ro DK, Zerbe P.

Plant J. 2017 Mar;89(5):885-897. doi: 10.1111/tpj.13427. Epub 2017 Feb 6.

29.

Assembly of the Complete Sitka Spruce Chloroplast Genome Using 10X Genomics' GemCode Sequencing Data.

Coombe L, Warren RL, Jackman SD, Yang C, Vandervalk BP, Moore RA, Pleasance S, Coope RJ, Bohlmann J, Holt RA, Jones SJ, Birol I.

PLoS One. 2016 Sep 15;11(9):e0163059. doi: 10.1371/journal.pone.0163059. eCollection 2016.

30.

Genomics-Based Discovery of Plant Genes for Synthetic Biology of Terpenoid Fragrances: A Case Study in Sandalwood oil Biosynthesis.

Celedon JM, Bohlmann J.

Methods Enzymol. 2016;576:47-67. doi: 10.1016/bs.mie.2016.03.008. Epub 2016 Apr 13.

PMID:
27480682
31.

Function of Sitka spruce stone cells as a physical defence against white pine weevil.

Whitehill JG, Henderson H, Strong W, Jaquish B, Bohlmann J.

Plant Cell Environ. 2016 Nov;39(11):2545-2556. doi: 10.1111/pce.12810. Epub 2016 Sep 19.

PMID:
27478980
32.

Gene expression analysis of overwintering mountain pine beetle larvae suggests multiple systems involved in overwintering stress, cold hardiness, and preparation for spring development.

Robert JA, Bonnett T, Pitt C, Spooner LJ, Fraser J, Yuen MM, Keeling CI, Bohlmann J, Huber DP.

PeerJ. 2016 Jul 6;4:e2109. doi: 10.7717/peerj.2109. eCollection 2016.

33.

Polymer Coatings of Cochlear Implant Electrode Surface - An Option for Improving Electrode-Nerve-Interface by Blocking Fibroblast Overgrowth.

Hadler C, Aliuos P, Brandes G, Warnecke A, Bohlmann J, Dempwolf W, Menzel H, Lenarz T, Reuter G, Wissel K.

PLoS One. 2016 Jul 8;11(7):e0157710. doi: 10.1371/journal.pone.0157710. eCollection 2016.

34.

Heartwood-specific transcriptome and metabolite signatures of tropical sandalwood (Santalum album) reveal the final step of (Z)-santalol fragrance biosynthesis.

Celedon JM, Chiang A, Yuen MM, Diaz-Chavez ML, Madilao LL, Finnegan PM, Barbour EL, Bohlmann J.

Plant J. 2016 May;86(4):289-99. doi: 10.1111/tpj.13162. Epub 2016 Apr 15.

35.

Modularity of Conifer Diterpene Resin Acid Biosynthesis: P450 Enzymes of Different CYP720B Clades Use Alternative Substrates and Converge on the Same Products.

Geisler K, Jensen NB, Yuen MM, Madilao L, Bohlmann J.

Plant Physiol. 2016 May;171(1):152-64. doi: 10.1104/pp.16.00180. Epub 2016 Mar 2.

36.

Quantitative metabolome, proteome and transcriptome analysis of midgut and fat body tissues in the mountain pine beetle, Dendroctonus ponderosae Hopkins, and insights into pheromone biosynthesis.

Keeling CI, Li M, Sandhu HK, Henderson H, Yuen MM, Bohlmann J.

Insect Biochem Mol Biol. 2016 Mar;70:170-83. doi: 10.1016/j.ibmb.2016.01.002. Epub 2016 Jan 12.

PMID:
26792242
37.

Expanding the Landscape of Diterpene Structural Diversity through Stereochemically Controlled Combinatorial Biosynthesis.

Andersen-Ranberg J, Kongstad KT, Nielsen MT, Jensen NB, Pateraki I, Bach SS, Hamberger B, Zerbe P, Staerk D, Bohlmann J, Møller BL, Hamberger B.

Angew Chem Int Ed Engl. 2016 Feb 5;55(6):2142-6. doi: 10.1002/anie.201510650. Epub 2016 Jan 8.

38.

Organellar Genomes of White Spruce (Picea glauca): Assembly and Annotation.

Jackman SD, Warren RL, Gibb EA, Vandervalk BP, Mohamadi H, Chu J, Raymond A, Pleasance S, Coope R, Wildung MR, Ritland CE, Bousquet J, Jones SJ, Bohlmann J, Birol I.

Genome Biol Evol. 2015 Dec 8;8(1):29-41. doi: 10.1093/gbe/evv244.

39.

Histology and cell wall biochemistry of stone cells in the physical defence of conifers against insects.

Whitehill JG, Henderson H, Schuetz M, Skyba O, Yuen MM, King J, Samuels AL, Mansfield SD, Bohlmann J.

Plant Cell Environ. 2016 Aug;39(8):1646-61. doi: 10.1111/pce.12654. Epub 2015 Dec 21.

PMID:
26474726
40.

Exploring diterpene metabolism in non-model species: transcriptome-enabled discovery and functional characterization of labda-7,13E-dienyl diphosphate synthase from Grindelia robusta.

Zerbe P, Rodriguez SM, Mafu S, Chiang A, Sandhu HK, O'Neil-Johnson M, Starks CM, Bohlmann J.

Plant J. 2015 Sep;83(5):783-93. doi: 10.1111/tpj.12925. Epub 2015 Jul 23.

41.

UniqTag: Content-Derived Unique and Stable Identifiers for Gene Annotation.

Jackman SD, Bohlmann J, Birol İ.

PLoS One. 2015 May 28;10(5):e0128026. doi: 10.1371/journal.pone.0128026. eCollection 2015.

42.

Improved white spruce (Picea glauca) genome assemblies and annotation of large gene families of conifer terpenoid and phenolic defense metabolism.

Warren RL, Keeling CI, Yuen MM, Raymond A, Taylor GA, Vandervalk BP, Mohamadi H, Paulino D, Chiu R, Jackman SD, Robertson G, Yang C, Boyle B, Hoffmann M, Weigel D, Nelson DR, Ritland C, Isabel N, Jaquish B, Yanchuk A, Bousquet J, Jones SJ, MacKay J, Birol I, Bohlmann J.

Plant J. 2015 Jul;83(2):189-212. doi: 10.1111/tpj.12886. Epub 2015 Jun 19.

43.

Plant diterpene synthases: exploring modularity and metabolic diversity for bioengineering.

Zerbe P, Bohlmann J.

Trends Biotechnol. 2015 Jul;33(7):419-28. doi: 10.1016/j.tibtech.2015.04.006. Epub 2015 May 20. Review.

PMID:
26003209
44.

Enzymes for synthetic biology of ambroxide-related diterpenoid fragrance compounds.

Zerbe P, Bohlmann J.

Adv Biochem Eng Biotechnol. 2015;148:427-47. doi: 10.1007/10_2015_308. Review.

PMID:
25846965
45.

The gymnosperm cytochrome P450 CYP750B1 catalyzes stereospecific monoterpene hydroxylation of (+)-sabinene in thujone biosynthesis in western redcedar.

Gesell A, Blaukopf M, Madilao L, Yuen MM, Withers SG, Mattsson J, Russell JH, Bohlmann J.

Plant Physiol. 2015 May;168(1):94-106. doi: 10.1104/pp.15.00315. Epub 2015 Mar 31.

46.

Oleic acid metabolism via a conserved cytochrome P450 system-mediated ω-hydroxylation in the bark beetle-associated fungus Grosmannia clavigera.

Novak M, Lah L, Šala M, Stojan J, Bohlmann J, Komel R.

PLoS One. 2015 Mar 20;10(3):e0120119. doi: 10.1371/journal.pone.0120119. eCollection 2015.

47.

The transcriptome of sesquiterpenoid biosynthesis in heartwood xylem of Western Australian sandalwood (Santalum spicatum).

Moniodis J, Jones CG, Barbour EL, Plummer JA, Ghisalberti EL, Bohlmann J.

Phytochemistry. 2015 May;113:79-86. doi: 10.1016/j.phytochem.2014.12.009. Epub 2015 Jan 24.

PMID:
25624157
48.

Transcriptional responses of Arabidopsis thaliana to chewing and sucking insect herbivores.

Appel HM, Fescemyer H, Ehlting J, Weston D, Rehrig E, Joshi T, Xu D, Bohlmann J, Schultz J.

Front Plant Sci. 2014 Nov 14;5:565. doi: 10.3389/fpls.2014.00565. eCollection 2014.

49.

Proteomics indicators of the rapidly shifting physiology from whole mountain pine beetle, Dendroctonus ponderosae (Coleoptera: Curculionidae), adults during early host colonization.

Pitt C, Robert JA, Bonnett TR, Keeling CI, Bohlmann J, Huber DP.

PLoS One. 2014 Oct 31;9(10):e110673. doi: 10.1371/journal.pone.0110673. eCollection 2014.

50.

Insights into conifer giga-genomes.

De La Torre AR, Birol I, Bousquet J, Ingvarsson PK, Jansson S, Jones SJ, Keeling CI, MacKay J, Nilsson O, Ritland K, Street N, Yanchuk A, Zerbe P, Bohlmann J.

Plant Physiol. 2014 Dec;166(4):1724-32. doi: 10.1104/pp.114.248708. Epub 2014 Oct 27. Review.

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