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Items: 1 to 50 of 94

1.

The Evolution of Oncology Companion Diagnostics from Signal Transduction to Immuno-Oncology.

Dracopoli NC, Boguski MS.

Trends Pharmacol Sci. 2017 Jan;38(1):41-54. doi: 10.1016/j.tips.2016.09.007. Epub 2016 Oct 24. Review.

PMID:
27789023
2.

Personal genotypes are teachable moments.

Boguski MS, Boguski RM, Berman MR.

Genome Med. 2013 Mar 19;5(3):22. doi: 10.1186/gm426. eCollection 2013.

3.

Pathologists and the third wave of medical genomics.

Boguski MS.

Per Med. 2012 May;9(3):241-242. doi: 10.2217/pme.12.27. No abstract available.

4.
5.

Trust it or trash it? a tool for evaluating the quality of genetic information.

McInerney JD, Boguski MS, Furlong P, Heywood B.

Genet Test Mol Biomarkers. 2010 Dec;14(6):743-8. doi: 10.1089/gtmb.2010.1512. Epub 2010 Sep 20. No abstract available.

PMID:
20854096
6.

A call to action: training pathology residents in genomics and personalized medicine.

Haspel RL, Arnaout R, Briere L, Kantarci S, Marchand K, Tonellato P, Connolly J, Boguski MS, Saffitz JE.

Am J Clin Pathol. 2010 Jun;133(6):832-4. doi: 10.1309/AJCPN6Q1QKCLYKXM.

PMID:
20472839
7.

Drug discovery. Repurposing with a difference.

Boguski MS, Mandl KD, Sukhatme VP.

Science. 2009 Jun 12;324(5933):1394-5. doi: 10.1126/science.1169920. No abstract available.

PMID:
19520944
8.

Customized care 2020: how medical sequencing and network biology will enable personalized medicine.

Boguski MS, Arnaout R, Hill C.

F1000 Biol Rep. 2009 Sep 28;1:73. doi: 10.3410/B1-73.

9.

Sequence databases: integrated information retrieval and data submission.

Weisemann JM, Boguski MS, Ouellette BF.

Curr Protoc Hum Genet. 2001 May;Chapter 6:Unit 6.7. doi: 10.1002/0471142905.hg0607s27.

PMID:
18428302
10.

Sequence databases: integrated information retrieval and data submission.

Weisemann JM, Boguski MS, Ouellette BF.

Curr Protoc Mol Biol. 2001 May;Chapter 19:Unit 19.2. doi: 10.1002/0471142727.mb1902s51.

PMID:
18265176
11.

Genome-wide atlas of gene expression in the adult mouse brain.

Lein ES, Hawrylycz MJ, Ao N, Ayres M, Bensinger A, Bernard A, Boe AF, Boguski MS, Brockway KS, Byrnes EJ, Chen L, Chen L, Chen TM, Chin MC, Chong J, Crook BE, Czaplinska A, Dang CN, Datta S, Dee NR, Desaki AL, Desta T, Diep E, Dolbeare TA, Donelan MJ, Dong HW, Dougherty JG, Duncan BJ, Ebbert AJ, Eichele G, Estin LK, Faber C, Facer BA, Fields R, Fischer SR, Fliss TP, Frensley C, Gates SN, Glattfelder KJ, Halverson KR, Hart MR, Hohmann JG, Howell MP, Jeung DP, Johnson RA, Karr PT, Kawal R, Kidney JM, Knapik RH, Kuan CL, Lake JH, Laramee AR, Larsen KD, Lau C, Lemon TA, Liang AJ, Liu Y, Luong LT, Michaels J, Morgan JJ, Morgan RJ, Mortrud MT, Mosqueda NF, Ng LL, Ng R, Orta GJ, Overly CC, Pak TH, Parry SE, Pathak SD, Pearson OC, Puchalski RB, Riley ZL, Rockett HR, Rowland SA, Royall JJ, Ruiz MJ, Sarno NR, Schaffnit K, Shapovalova NV, Sivisay T, Slaughterbeck CR, Smith SC, Smith KA, Smith BI, Sodt AJ, Stewart NN, Stumpf KR, Sunkin SM, Sutram M, Tam A, Teemer CD, Thaller C, Thompson CL, Varnam LR, Visel A, Whitlock RM, Wohnoutka PE, Wolkey CK, Wong VY, Wood M, Yaylaoglu MB, Young RC, Youngstrom BL, Yuan XF, Zhang B, Zwingman TA, Jones AR.

Nature. 2007 Jan 11;445(7124):168-76. Epub 2006 Dec 6.

PMID:
17151600
12.

PharmGKB update: II. CYP3A5, cytochrome P450, family 3, subfamily A, polypeptide 5.

Schuetz EG, Relling MV, Kishi S, Yang W, Das S, Chen P, Cook EH, Rosner GL, Pui CH, Blanco JG, Edick MJ, Hancock ML, Winick NJ, Dervieux T, Amylon MD, Bash RO, Behm FG, Camitta BM, Raimondi SC, Goh BC, Lee SC, Wang LZ, Fan L, Guo JY, Lamba J, Lim R, Lim HL, Ong AB, Lee HS, Kuehl P, Zhang J, Lin Y, Assem M, Schuetz J, Watkins PB, Daly A, Wrighton SA, Hall SD, Maurel P, Brimer C, Yasuda K, Venkataramanan R, Strom S, Thummel K, Boguski MS.

Pharmacol Rev. 2004 Jun;56(2):159. No abstract available.

PMID:
15169924
13.

Neurogenomics: at the intersection of neurobiology and genome sciences.

Boguski MS, Jones AR.

Nat Neurosci. 2004 May;7(5):429-33. Review.

PMID:
15114353
14.

ENCODE and ChIP-chip in the genome era.

Boguski MS.

Genomics. 2004 Mar;83(3):347-8. No abstract available.

PMID:
14962661
15.

Genome informatics: current status and future prospects.

Winslow RL, Boguski MS.

Circ Res. 2003 May 16;92(9):953-61. Review.

16.

Biomedical informatics for proteomics.

Boguski MS, McIntosh MW.

Nature. 2003 Mar 13;422(6928):233-7. Review.

PMID:
12634797
17.

Comparative genomics: the mouse that roared.

Boguski MS.

Nature. 2002 Dec 5;420(6915):515-6. No abstract available.

PMID:
12466847
18.

Molecular archeology of L1 insertions in the human genome.

Szak ST, Pickeral OK, Makalowski W, Boguski MS, Landsman D, Boeke JD.

Genome Biol. 2002 Sep 19;3(10):research0052. Epub 2002 Sep 19.

19.

The human pregnane X receptor: genomic structure and identification and functional characterization of natural allelic variants.

Zhang J, Kuehl P, Green ED, Touchman JW, Watkins PB, Daly A, Hall SD, Maurel P, Relling M, Brimer C, Yasuda K, Wrighton SA, Hancock M, Kim RB, Strom S, Thummel K, Russell CG, Hudson JR Jr, Schuetz EG, Boguski MS.

Pharmacogenetics. 2001 Oct;11(7):555-72.

PMID:
11668216
20.

Sequence diversity in CYP3A promoters and characterization of the genetic basis of polymorphic CYP3A5 expression.

Kuehl P, Zhang J, Lin Y, Lamba J, Assem M, Schuetz J, Watkins PB, Daly A, Wrighton SA, Hall SD, Maurel P, Relling M, Brimer C, Yasuda K, Venkataramanan R, Strom S, Thummel K, Boguski MS, Schuetz E.

Nat Genet. 2001 Apr;27(4):383-91.

PMID:
11279519
21.

Experimental annotation of the human genome using microarray technology.

Shoemaker DD, Schadt EE, Armour CD, He YD, Garrett-Engele P, McDonagh PD, Loerch PM, Leonardson A, Lum PY, Cavet G, Wu LF, Altschuler SJ, Edwards S, King J, Tsang JS, Schimmack G, Schelter JM, Koch J, Ziman M, Marton MJ, Li B, Cundiff P, Ward T, Castle J, Krolewski M, Meyer MR, Mao M, Burchard J, Kidd MJ, Dai H, Phillips JW, Linsley PS, Stoughton R, Scherer S, Boguski MS.

Nature. 2001 Feb 15;409(6822):922-7.

PMID:
11237012
22.

Classical oncogenes and tumor suppressor genes: a comparative genomics perspective.

Pickeral OK, Li JZ, Barrow I, Boguski MS, Makałowski W, Zhang J.

Neoplasia. 2000 May-Jun;2(3):280-6.

23.

A survey of human disease gene counterparts in the Drosophila genome.

Fortini ME, Skupski MP, Boguski MS, Hariharan IK.

J Cell Biol. 2000 Jul 24;150(2):F23-30. Review. No abstract available.

24.

Frequent human genomic DNA transduction driven by LINE-1 retrotransposition.

Pickeral OK, Makałowski W, Boguski MS, Boeke JD.

Genome Res. 2000 Apr;10(4):411-5.

25.

Comparative genomics of the eukaryotes.

Rubin GM, Yandell MD, Wortman JR, Gabor Miklos GL, Nelson CR, Hariharan IK, Fortini ME, Li PW, Apweiler R, Fleischmann W, Cherry JM, Henikoff S, Skupski MP, Misra S, Ashburner M, Birney E, Boguski MS, Brody T, Brokstein P, Celniker SE, Chervitz SA, Coates D, Cravchik A, Gabrielian A, Galle RF, Gelbart WM, George RA, Goldstein LS, Gong F, Guan P, Harris NL, Hay BA, Hoskins RA, Li J, Li Z, Hynes RO, Jones SJ, Kuehl PM, Lemaitre B, Littleton JT, Morrison DK, Mungall C, O'Farrell PH, Pickeral OK, Shue C, Vosshall LB, Zhang J, Zhao Q, Zheng XH, Lewis S.

Science. 2000 Mar 24;287(5461):2204-15.

26.

Human and nematode orthologs--lessons from the analysis of 1800 human genes and the proteome of Caenorhabditis elegans.

Wheelan SJ, Boguski MS, Duret L, Makałowski W.

Gene. 1999 Sep 30;238(1):163-70.

PMID:
10570994
27.

Mutations in the gene encoding KRIT1, a Krev-1/rap1a binding protein, cause cerebral cavernous malformations (CCM1).

Sahoo T, Johnson EW, Thomas JW, Kuehl PM, Jones TL, Dokken CG, Touchman JW, Gallione CJ, Lee-Lin SQ, Kosofsky B, Kurth JH, Louis DN, Mettler G, Morrison L, Gil-Nagel A, Rich SS, Zabramski JM, Boguski MS, Green ED, Marchuk DA.

Hum Mol Genet. 1999 Nov;8(12):2325-33.

PMID:
10545614
28.

Biosequence exegesis.

Boguski MS.

Science. 1999 Oct 15;286(5439):453-5.

PMID:
10521334
29.

A YAC-based physical map of the mouse genome.

Nusbaum C, Slonim DK, Harris KL, Birren BW, Steen RG, Stein LD, Miller J, Dietrich WF, Nahf R, Wang V, Merport O, Castle AB, Husain Z, Farino G, Gray D, Anderson MO, Devine R, Horton LT Jr, Ye W, Wu X, Kouyoumjian V, Zemsteva IS, Wu Y, Collymore AJ, Courtney DF, Tam J, Cadman M, Haynes AR, Heuston C, Marsland T, Southwell A, Trickett P, Strivens MA, Ross MT, Makalowski W, Xu Y, Boguski MS, Carter NP, Denny P, Brown SD, Hudson TJ, Lander ES.

Nat Genet. 1999 Aug;22(4):388-93.

PMID:
10431246
30.

An effective approach for analyzing "prefinished" genomic sequence data.

Kuehl PM, Weisemann JM, Touchman JW, Green ED, Boguski MS.

Genome Res. 1999 Feb;9(2):189-94.

31.

Evolutionary conservation and somatic mutation hotspot maps of p53: correlation with p53 protein structural and functional features.

Walker DR, Bond JP, Tarone RE, Harris CC, Makalowski W, Boguski MS, Greenblatt MS.

Oncogene. 1999 Jan 7;18(1):211-8.

32.

Gene expression informatics--it's all in your mine.

Bassett DE Jr, Eisen MB, Boguski MS.

Nat Genet. 1999 Jan;21(1 Suppl):51-5. Review.

PMID:
9915502
33.

The transcriptional program in the response of human fibroblasts to serum.

Iyer VR, Eisen MB, Ross DT, Schuler G, Moore T, Lee JC, Trent JM, Staudt LM, Hudson J Jr, Boguski MS, Lashkari D, Shalon D, Botstein D, Brown PO.

Science. 1999 Jan 1;283(5398):83-7.

34.

GenBank.

Benson DA, Boguski MS, Lipman DJ, Ostell J, Ouellette BF, Rapp BA, Wheeler DL.

Nucleic Acids Res. 1999 Jan 1;27(1):12-7.

35.

A physical map of 30,000 human genes.

Deloukas P, Schuler GD, Gyapay G, Beasley EM, Soderlund C, Rodriguez-Tomé P, Hui L, Matise TC, McKusick KB, Beckmann JS, Bentolila S, Bihoreau M, Birren BB, Browne J, Butler A, Castle AB, Chiannilkulchai N, Clee C, Day PJ, Dehejia A, Dibling T, Drouot N, Duprat S, Fizames C, Fox S, Gelling S, Green L, Harrison P, Hocking R, Holloway E, Hunt S, Keil S, Lijnzaad P, Louis-Dit-Sully C, Ma J, Mendis A, Miller J, Morissette J, Muselet D, Nusbaum HC, Peck A, Rozen S, Simon D, Slonim DK, Staples R, Stein LD, Stewart EA, Suchard MA, Thangarajah T, Vega-Czarny N, Webber C, Wu X, Hudson J, Auffray C, Nomura N, Sikela JM, Polymeropoulos MH, James MR, Lander ES, Hudson TJ, Myers RM, Cox DR, Weissenbach J, Boguski MS, Bentley DR.

Science. 1998 Oct 23;282(5389):744-6.

36.

Data management and analysis for gene expression arrays.

Ermolaeva O, Rastogi M, Pruitt KD, Schuler GD, Bittner ML, Chen Y, Simon R, Meltzer P, Trent JM, Boguski MS.

Nat Genet. 1998 Sep;20(1):19-23.

PMID:
9731524
37.

Synonymous and nonsynonymous substitution distances are correlated in mouse and rat genes.

Makalowski W, Boguski MS.

J Mol Evol. 1998 Aug;47(2):119-21. No abstract available.

PMID:
9694659
38.
39.

Late-night thoughts on the sequence annotation problem.

Wheelan SJ, Boguski MS.

Genome Res. 1998 Mar;8(3):168-9. Review. No abstract available.

40.

GenBank.

Benson DA, Boguski MS, Lipman DJ, Ostell J, Ouellette BF.

Nucleic Acids Res. 1998 Jan 1;26(1):1-7.

41.

Eighteen new polymorphic markers in the multiple endocrine neoplasia type 1 (MEN1) region.

Manickam P, Guru SC, Debelenko LV, Agarwal SK, Olufemi SE, Weisemann JM, Boguski MS, Crabtree JS, Wang Y, Roe BA, Lubensky IA, Zhuang Z, Kester MB, Burns AL, Spiegel AM, Marx SJ, Liotta LA, Emmert-Buck MR, Collins FS, Chandrasekharappa SC.

Hum Genet. 1997 Nov;101(1):102-8.

PMID:
9385379
42.

Database divisions and homology search files: a guide for the perplexed.

Ouellette BF, Boguski MS.

Genome Res. 1997 Oct;7(10):952-5. No abstract available.

43.

A transcript map for the 2.8-Mb region containing the multiple endocrine neoplasia type 1 locus.

Guru SC, Agarwal SK, Manickam P, Olufemi SE, Crabtree JS, Weisemann JM, Kester MB, Kim YS, Wang Y, Emmert-Buck MR, Liotta LA, Spiegel AM, Boguski MS, Roe BA, Collins FS, Marx SJ, Burns L, Chandrasekharappa SC.

Genome Res. 1997 Jul;7(7):725-35.

44.

A 2.8-Mb clone contig of the multiple endocrine neoplasia type 1 (MEN1) region at 11q13.

Guru SC, Olufemi SE, Manickam P, Cummings C, Gieser LM, Pike BL, Bittner ML, Jiang Y, Chinault AC, Nowak NJ, Brzozowska A, Crabtree JS, Wang Y, Roe BA, Weisemann JM, Boguski MS, Agarwal SK, Burns AL, Spiegel AM, Marx SJ, Flejter WL, de Jong PJ, Collins FS, Chandrasekharappa SC.

Genomics. 1997 Jun 15;42(3):436-45.

PMID:
9205115
45.

Positionally cloned human disease genes: patterns of evolutionary conservation and functional motifs.

Mushegian AR, Bassett DE Jr, Boguski MS, Bork P, Koonin EV.

Proc Natl Acad Sci U S A. 1997 May 27;94(11):5831-6.

46.

Positional cloning of the gene for multiple endocrine neoplasia-type 1.

Chandrasekharappa SC, Guru SC, Manickam P, Olufemi SE, Collins FS, Emmert-Buck MR, Debelenko LV, Zhuang Z, Lubensky IA, Liotta LA, Crabtree JS, Wang Y, Roe BA, Weisemann J, Boguski MS, Agarwal SK, Kester MB, Kim YS, Heppner C, Dong Q, Spiegel AM, Burns AL, Marx SJ.

Science. 1997 Apr 18;276(5311):404-7.

47.

Genome cross-referencing and XREFdb: implications for the identification and analysis of genes mutated in human disease.

Bassett DE Jr, Boguski MS, Spencer F, Reeves R, Kim S, Weaver T, Hieter P.

Nat Genet. 1997 Apr;15(4):339-44.

PMID:
9090377
48.

GenBank.

Benson DA, Boguski MS, Lipman DJ, Ostell J.

Nucleic Acids Res. 1997 Jan 1;25(1):1-6.

49.

Genomes and evolution.

Boguski MS, Cox DR, Myers RM.

Curr Opin Genet Dev. 1996 Dec 1;6(6):683-5. No abstract available.

PMID:
9000014
50.

Genome maps 7. The human transcript map. Wall chart.

Schuler GD, Boguski MS, Hudson TJ, Hui L, Ma J, Castle AB, Wu X, Silva J, Nusbaum HC, Birren BB, Slonim DK, Rozen S, Stein LD, Page D, Lander ES, Stewart EA, Aggarwal A, Bajorek E, Brady S, Chu S, Fang N, Hadley D, Harris M, Hussain S, Hudson JR Jr, et al.

Science. 1996 Oct 25;274(5287):547-62. No abstract available.

PMID:
8928009

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