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Items: 1 to 50 of 83

1.

Pulse SILAC Approaches to the Measurement of Cellular Dynamics.

Snider J, Wang D, Bogenhagen DF, Haley JD.

Adv Exp Med Biol. 2019;1140:575-583. doi: 10.1007/978-3-030-15950-4_34.

PMID:
31347072
2.

Kinetics and Mechanism of Mammalian Mitochondrial Ribosome Assembly.

Bogenhagen DF, Ostermeyer-Fay AG, Haley JD, Garcia-Diaz M.

Cell Rep. 2018 Feb 13;22(7):1935-1944. doi: 10.1016/j.celrep.2018.01.066.

3.

Extracellular Mitochondrial DNA Is Generated by Fibroblasts and Predicts Death in Idiopathic Pulmonary Fibrosis.

Ryu C, Sun H, Gulati M, Herazo-Maya JD, Chen Y, Osafo-Addo A, Brandsdorfer C, Winkler J, Blaul C, Faunce J, Pan H, Woolard T, Tzouvelekis A, Antin-Ozerkis DE, Puchalski JT, Slade M, Gonzalez AL, Bogenhagen DF, Kirillov V, Feghali-Bostwick C, Gibson K, Lindell K, Herzog RI, Dela Cruz CS, Mehal W, Kaminski N, Herzog EL, Trujillo G.

Am J Respir Crit Care Med. 2017 Dec 15;196(12):1571-1581. doi: 10.1164/rccm.201612-2480OC.

4.

Scalable Isolation of Mammalian Mitochondria for Nucleic Acid and Nucleoid Analysis.

Lee KW, Bogenhagen DF.

Methods Mol Biol. 2016;1351:67-79. doi: 10.1007/978-1-4939-3040-1_6.

PMID:
26530675
5.

Assignment of 2'-O-methyltransferases to modification sites on the mammalian mitochondrial large subunit 16 S ribosomal RNA (rRNA).

Lee KW, Bogenhagen DF.

J Biol Chem. 2014 Sep 5;289(36):24936-42. doi: 10.1074/jbc.C114.581868. Epub 2014 Jul 29.

6.

Initial steps in RNA processing and ribosome assembly occur at mitochondrial DNA nucleoids.

Bogenhagen DF, Martin DW, Koller A.

Cell Metab. 2014 Apr 1;19(4):618-29. doi: 10.1016/j.cmet.2014.03.013.

7.

Mitochondrial ribosomal RNA (rRNA) methyltransferase family members are positioned to modify nascent rRNA in foci near the mitochondrial DNA nucleoid.

Lee KW, Okot-Kotber C, LaComb JF, Bogenhagen DF.

J Biol Chem. 2013 Oct 25;288(43):31386-99. doi: 10.1074/jbc.M113.515692. Epub 2013 Sep 13.

8.

Phosphorylation of human TFAM in mitochondria impairs DNA binding and promotes degradation by the AAA+ Lon protease.

Lu B, Lee J, Nie X, Li M, Morozov YI, Venkatesh S, Bogenhagen DF, Temiakov D, Suzuki CK.

Mol Cell. 2013 Jan 10;49(1):121-32. doi: 10.1016/j.molcel.2012.10.023. Epub 2012 Nov 29.

9.

Mitochondrial DNA nucleoid structure.

Bogenhagen DF.

Biochim Biophys Acta. 2012 Sep-Oct;1819(9-10):914-20. doi: 10.1016/j.bbagrm.2011.11.005. Epub 2011 Nov 27. Review.

PMID:
22142616
10.

Superresolution fluorescence imaging of mitochondrial nucleoids reveals their spatial range, limits, and membrane interaction.

Brown TA, Tkachuk AN, Shtengel G, Kopek BG, Bogenhagen DF, Hess HF, Clayton DA.

Mol Cell Biol. 2011 Dec;31(24):4994-5010. doi: 10.1128/MCB.05694-11. Epub 2011 Oct 17.

11.

Does mtDNA nucleoid organization impact aging?

Bogenhagen DF.

Exp Gerontol. 2010 Aug;45(7-8):473-7. doi: 10.1016/j.exger.2009.12.002. Epub 2009 Dec 11. Review.

12.

Biochemical isolation of mtDNA nucleoids from animal cells.

Bogenhagen DF.

Methods Mol Biol. 2009;554:3-14. doi: 10.1007/978-1-59745-521-3_1.

PMID:
19513664
13.

Human DNA2 is a mitochondrial nuclease/helicase for efficient processing of DNA replication and repair intermediates.

Zheng L, Zhou M, Guo Z, Lu H, Qian L, Dai H, Qiu J, Yakubovskaya E, Bogenhagen DF, Demple B, Shen B.

Mol Cell. 2008 Nov 7;32(3):325-36. doi: 10.1016/j.molcel.2008.09.024.

14.

Removal of oxidative DNA damage via FEN1-dependent long-patch base excision repair in human cell mitochondria.

Liu P, Qian L, Sung JS, de Souza-Pinto NC, Zheng L, Bogenhagen DF, Bohr VA, Wilson DM 3rd, Shen B, Demple B.

Mol Cell Biol. 2008 Aug;28(16):4975-87. doi: 10.1128/MCB.00457-08. Epub 2008 Jun 9.

15.

The layered structure of human mitochondrial DNA nucleoids.

Bogenhagen DF, Rousseau D, Burke S.

J Biol Chem. 2008 Feb 8;283(6):3665-75. Epub 2007 Dec 6.

16.

A quantitative proteomic analysis of mitochondrial participation in p19 cell neuronal differentiation.

Watkins J, Basu S, Bogenhagen DF.

J Proteome Res. 2008 Jan;7(1):328-38. Epub 2007 Nov 23.

17.

The EM structure of human DNA polymerase gamma reveals a localized contact between the catalytic and accessory subunits.

Yakubovskaya E, Lukin M, Chen Z, Berriman J, Wall JS, Kobayashi R, Kisker C, Bogenhagen DF.

EMBO J. 2007 Oct 3;26(19):4283-91. Epub 2007 Aug 30.

18.

Proteolytic activation of monocyte chemoattractant protein-1 by plasmin underlies excitotoxic neurodegeneration in mice.

Sheehan JJ, Zhou C, Gravanis I, Rogove AD, Wu YP, Bogenhagen DF, Tsirka SE.

J Neurosci. 2007 Feb 14;27(7):1738-45.

19.
20.

MiGenes: a searchable interspecies database of mitochondrial proteins curated using gene ontology annotation.

Basu S, Bremer E, Zhou C, Bogenhagen DF.

Bioinformatics. 2006 Feb 15;22(4):485-92. Epub 2005 Dec 20.

PMID:
16368773
21.

Functional human mitochondrial DNA polymerase gamma forms a heterotrimer.

Yakubovskaya E, Chen Z, Carrodeguas JA, Kisker C, Bogenhagen DF.

J Biol Chem. 2006 Jan 6;281(1):374-82. Epub 2005 Nov 1.

22.

The influence of the DNA polymerase gamma accessory subunit on base excision repair by the catalytic subunit.

Pinz KG, Bogenhagen DF.

DNA Repair (Amst). 2006 Jan 5;5(1):121-8. Epub 2005 Sep 30.

PMID:
16202665
23.

Protein components of mitochondrial DNA nucleoids in higher eukaryotes.

Bogenhagen DF, Wang Y, Shen EL, Kobayashi R.

Mol Cell Proteomics. 2003 Nov;2(11):1205-16. Epub 2003 Sep 26.

24.

Concluding remarks: The mitochondrial DNA replication bubble has not burst.

Bogenhagen DF, Clayton DA.

Trends Biochem Sci. 2003 Aug;28(8):404-5. No abstract available.

PMID:
12932727
25.

The mitochondrial DNA replication bubble has not burst.

Bogenhagen DF, Clayton DA.

Trends Biochem Sci. 2003 Jul;28(7):357-60. No abstract available.

PMID:
12878002
26.

DNA binding properties of human pol gammaB.

Carrodeguas JA, Pinz KG, Bogenhagen DF.

J Biol Chem. 2002 Dec 20;277(51):50008-14. Epub 2002 Oct 11.

27.

Purification of mitochondria for enzymes involved in nucleic acid transactions.

Bogenhagen DF.

Methods Mol Biol. 2002;197:199-210. No abstract available.

PMID:
12013797
28.

Two forms of mitochondrial DNA ligase III are produced in Xenopus laevis oocytes.

Perez-Jannotti RM, Klein SM, Bogenhagen DF.

J Biol Chem. 2001 Dec 28;276(52):48978-87. Epub 2001 Oct 11.

29.

Enzymology of mitochondrial base excision repair.

Bogenhagen DF, Pinz KG, Perez-Jannotti RM.

Prog Nucleic Acid Res Mol Biol. 2001;68:257-71. Review.

PMID:
11554302
30.
31.
32.
35.

Repair of mtDNA in vertebrates.

Bogenhagen DF.

Am J Hum Genet. 1999 May;64(5):1276-81. Review. No abstract available.

36.

The action of DNA ligase at abasic sites in DNA.

Bogenhagen DF, Pinz KG.

J Biol Chem. 1998 Apr 3;273(14):7888-93.

37.

Efficient repair of abasic sites in DNA by mitochondrial enzymes.

Pinz KG, Bogenhagen DF.

Mol Cell Biol. 1998 Mar;18(3):1257-65.

38.
40.

Cloning and characterization of the gene for the somatic form of DNA topoisomerase I from Xenopus laevis.

Pandit SD, Richard RE, Sternglanz R, Bogenhagen DF.

Nucleic Acids Res. 1996 Sep 15;24(18):3593-600.

42.
43.
44.

Functional conservation of yeast mtTFB despite extensive sequence divergence.

Carrodeguas JA, Yun S, Shadel GS, Clayton DA, Bogenhagen DF.

Gene Expr. 1996;6(4):219-30.

45.

Distinct roles for two purified factors in transcription of Xenopus mitochondrial DNA.

Antoshechkin I, Bogenhagen DF.

Mol Cell Biol. 1995 Dec;15(12):7032-42.

46.

Action of mitochondrial DNA polymerase gamma at sites of base loss or oxidative damage.

Pinz KG, Shibutani S, Bogenhagen DF.

J Biol Chem. 1995 Apr 21;270(16):9202-6.

49.

Effects of DNA lesions on transcription elongation by T7 RNA polymerase.

Chen YH, Bogenhagen DF.

J Biol Chem. 1993 Mar 15;268(8):5849-55.

50.

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