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Best matches for Bogdanović O[au]:

Germ line-inherited H3K27me3 restricts enhancer function during maternal-to-zygotic transition. Zenk F et al. Science. (2017)

Genome evolution in the allotetraploid frog Xenopus laevis. Session AM et al. Nature. (2016)

DNA methylation and the preservation of cell identity. Bogdanović O et al. Curr Opin Genet Dev. (2017)

Search results

Items: 25

1.

Regulatory remodeling in the allo-tetraploid frog Xenopus laevis.

Elurbe DM, Paranjpe SS, Georgiou G, van Kruijsbergen I, Bogdanovic O, Gibeaux R, Heald R, Lister R, Huynen MA, van Heeringen SJ, Veenstra GJC.

Genome Biol. 2017 Oct 24;18(1):198. doi: 10.1186/s13059-017-1335-7.

2.

Germ line-inherited H3K27me3 restricts enhancer function during maternal-to-zygotic transition.

Zenk F, Loeser E, Schiavo R, Kilpert F, Bogdanović O, Iovino N.

Science. 2017 Jul 14;357(6347):212-216. doi: 10.1126/science.aam5339.

PMID:
28706074
3.

Rapid Recovery Gene Downregulation during Excess-Light Stress and Recovery in Arabidopsis.

Crisp PA, Ganguly DR, Smith AB, Murray KD, Estavillo GM, Searle I, Ford E, Bogdanović O, Lister R, Borevitz JO, Eichten SR, Pogson BJ.

Plant Cell. 2017 Aug;29(8):1836-1863. doi: 10.1105/tpc.16.00828. Epub 2017 Jul 13.

4.

DNA methylation and the preservation of cell identity.

Bogdanović O, Lister R.

Curr Opin Genet Dev. 2017 Oct;46:9-14. doi: 10.1016/j.gde.2017.06.007. Epub 2017 Jun 24. Review.

PMID:
28651214
5.

Tet proteins: master regulators of vertebrate body plan formation?

Bogdanović O.

Epigenomics. 2017 Feb;9(2):93-96. doi: 10.2217/epi-2016-0164. Epub 2016 Dec 2. No abstract available.

6.

Genome evolution in the allotetraploid frog Xenopus laevis.

Session AM, Uno Y, Kwon T, Chapman JA, Toyoda A, Takahashi S, Fukui A, Hikosaka A, Suzuki A, Kondo M, van Heeringen SJ, Quigley I, Heinz S, Ogino H, Ochi H, Hellsten U, Lyons JB, Simakov O, Putnam N, Stites J, Kuroki Y, Tanaka T, Michiue T, Watanabe M, Bogdanovic O, Lister R, Georgiou G, Paranjpe SS, van Kruijsbergen I, Shu S, Carlson J, Kinoshita T, Ohta Y, Mawaribuchi S, Jenkins J, Grimwood J, Schmutz J, Mitros T, Mozaffari SV, Suzuki Y, Haramoto Y, Yamamoto TS, Takagi C, Heald R, Miller K, Haudenschild C, Kitzman J, Nakayama T, Izutsu Y, Robert J, Fortriede J, Burns K, Lotay V, Karimi K, Yasuoka Y, Dichmann DS, Flajnik MF, Houston DW, Shendure J, DuPasquier L, Vize PD, Zorn AM, Ito M, Marcotte EM, Wallingford JB, Ito Y, Asashima M, Ueno N, Matsuda Y, Veenstra GJ, Fujiyama A, Harland RM, Taira M, Rokhsar DS.

Nature. 2016 Oct 20;538(7625):336-343. doi: 10.1038/nature19840.

7.

ChIP-seq Data Processing for PcG Proteins and Associated Histone Modifications.

Bogdanovic O, van Heeringen SJ.

Methods Mol Biol. 2016;1480:37-53. doi: 10.1007/978-1-4939-6380-5_4.

PMID:
27659973
8.

Erratum: Embryonic transcription is controlled by maternally defined chromatin state.

Hontelez S, van Kruijsbergen I, Georgiou G, van Heeringen SJ, Bogdanovic O, Lister R, Veenstra GJ.

Nat Commun. 2016 Jul 5;7:12208. doi: 10.1038/ncomms12208. No abstract available.

9.

Active DNA demethylation at enhancers during the vertebrate phylotypic period.

Bogdanović O, Smits AH, de la Calle Mustienes E, Tena JJ, Ford E, Williams R, Senanayake U, Schultz MD, Hontelez S, van Kruijsbergen I, Rayon T, Gnerlich F, Carell T, Veenstra GJ, Manzanares M, Sauka-Spengler T, Ecker JR, Vermeulen M, Gómez-Skarmeta JL, Lister R.

Nat Genet. 2016 Apr;48(4):417-26. doi: 10.1038/ng.3522. Epub 2016 Feb 29.

10.

Genome-wide epigenetic cross-talk between DNA methylation and H3K27me3 in zebrafish embryos.

de la Calle Mustienes E, Gómez-Skarmeta JL, Bogdanović O.

Genom Data. 2015 Jul 22;6:7-9. doi: 10.1016/j.gdata.2015.07.020. eCollection 2015 Dec.

11.

Embryonic transcription is controlled by maternally defined chromatin state.

Hontelez S, van Kruijsbergen I, Georgiou G, van Heeringen SJ, Bogdanovic O, Lister R, Veenstra GJ.

Nat Commun. 2015 Dec 18;6:10148. doi: 10.1038/ncomms10148. Erratum in: Nat Commun. 2016 Jul 05;7:12208.

12.

Meis1 coordinates a network of genes implicated in eye development and microphthalmia.

Marcos S, González-Lázaro M, Beccari L, Carramolino L, Martin-Bermejo MJ, Amarie O, Mateos-San Martín D, Torroja C, Bogdanović O, Doohan R, Puk O, Hrabě de Angelis M, Graw J, Gomez-Skarmeta JL, Casares F, Torres M, Bovolenta P.

Development. 2015 Sep 1;142(17):3009-20. doi: 10.1242/dev.122176. Epub 2015 Aug 7.

13.

Of Mice and Man: Differential DNMT Dependence in Mammalian ESCs.

Bogdanović O, Lister R.

Cell Stem Cell. 2015 May 7;16(5):459-60. doi: 10.1016/j.stem.2015.04.009.

14.

Invertebrate epigenomics: the brave new world of the spineless.

Bogdanović O.

Brief Funct Genomics. 2014 May;13(3):189-90. doi: 10.1093/bfgp/elu008. No abstract available.

PMID:
24860128
15.

Embryonic DNA methylation: insights from the genomics era.

Bogdanović O, Gómez-Skarmeta JL.

Brief Funct Genomics. 2014 Mar;13(2):121-30. doi: 10.1093/bfgp/elt039. Epub 2013 Sep 23. Review.

PMID:
24064195
16.

The developmental epigenomics toolbox: ChIP-seq and MethylCap-seq profiling of early zebrafish embryos.

Bogdanović O, Fernández-Miñán A, Tena JJ, de la Calle-Mustienes E, Gómez-Skarmeta JL.

Methods. 2013 Aug 15;62(3):207-15. doi: 10.1016/j.ymeth.2013.04.011. Epub 2013 Apr 23.

PMID:
23624103
17.

Numb/Numbl-Opo antagonism controls retinal epithelium morphogenesis by regulating integrin endocytosis.

Bogdanović O, Delfino-Machín M, Nicolás-Pérez M, Gavilán MP, Gago-Rodrigues I, Fernández-Miñán A, Lillo C, Ríos RM, Wittbrodt J, Martínez-Morales JR.

Dev Cell. 2012 Oct 16;23(4):782-95. doi: 10.1016/j.devcel.2012.09.004. Epub 2012 Oct 4.

18.

Extensive conservation of ancient microsynteny across metazoans due to cis-regulatory constraints.

Irimia M, Tena JJ, Alexis MS, Fernandez-Miñan A, Maeso I, Bogdanovic O, de la Calle-Mustienes E, Roy SW, Gómez-Skarmeta JL, Fraser HB.

Genome Res. 2012 Dec;22(12):2356-67. doi: 10.1101/gr.139725.112. Epub 2012 Jun 21.

19.

Dynamics of enhancer chromatin signatures mark the transition from pluripotency to cell specification during embryogenesis.

Bogdanovic O, Fernandez-Miñán A, Tena JJ, de la Calle-Mustienes E, Hidalgo C, van Kruysbergen I, van Heeringen SJ, Veenstra GJ, Gómez-Skarmeta JL.

Genome Res. 2012 Oct;22(10):2043-53. doi: 10.1101/gr.134833.111. Epub 2012 May 16.

20.

The epigenome in early vertebrate development.

Bogdanović O, van Heeringen SJ, Veenstra GJ.

Genesis. 2012 Mar;50(3):192-206. doi: 10.1002/dvg.20831. Epub 2011 Dec 27. Review.

21.

Affinity-based enrichment strategies to assay methyl-CpG binding activity and DNA methylation in early Xenopus embryos.

Bogdanović O, Veenstra GJ.

BMC Res Notes. 2011 Aug 18;4:300. doi: 10.1186/1756-0500-4-300.

22.

Temporal uncoupling of the DNA methylome and transcriptional repression during embryogenesis.

Bogdanovic O, Long SW, van Heeringen SJ, Brinkman AB, Gómez-Skarmeta JL, Stunnenberg HG, Jones PL, Veenstra GJ.

Genome Res. 2011 Aug;21(8):1313-27. doi: 10.1101/gr.114843.110. Epub 2011 Jun 2.

23.

Genome-wide CTCF distribution in vertebrates defines equivalent sites that aid the identification of disease-associated genes.

Martin D, Pantoja C, Fernández Miñán A, Valdes-Quezada C, Moltó E, Matesanz F, Bogdanović O, de la Calle-Mustienes E, Domínguez O, Taher L, Furlan-Magaril M, Alcina A, Cañón S, Fedetz M, Blasco MA, Pereira PS, Ovcharenko I, Recillas-Targa F, Montoliu L, Manzanares M, Guigó R, Serrano M, Casares F, Gómez-Skarmeta JL.

Nat Struct Mol Biol. 2011 Jun;18(6):708-14. doi: 10.1038/nsmb.2059. Epub 2011 May 22. Erratum in: Nat Struct Mol Biol. 2011 Sep;18(9):1084.

24.

DNA methylation and methyl-CpG binding proteins: developmental requirements and function.

Bogdanović O, Veenstra GJ.

Chromosoma. 2009 Oct;118(5):549-65. doi: 10.1007/s00412-009-0221-9. Epub 2009 Jun 9. Review.

25.

Loss of imprinting of IGF2 and H19, loss of heterozygosity of IGF2R and CTCF, and Helicobacter pylori infection in laryngeal squamous cell carcinoma.

Grbesa I, Marinkovic M, Ivkic M, Kruslin B, Novak-Kujundzic R, Pegan B, Bogdanovic O, Bedekovic V, Gall-Troselj K.

J Mol Med (Berl). 2008 Sep;86(9):1057-66. doi: 10.1007/s00109-008-0369-4. Epub 2008 Jul 5.

PMID:
18604514

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