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Items: 1 to 50 of 65

1.

Complete Genome Sequences of Xanthomonas axonopodis pv. glycines Isolates from the United States and Thailand Reveal Conserved Transcription Activator-Like Effectors.

Carpenter SCD, Kladsuwan L, Han SW, Prathuangwong S, Bogdanove AJ.

Genome Biol Evol. 2019 May 1;11(5):1380-1384. doi: 10.1093/gbe/evz085.

2.

A Strain of an Emerging Indian Xanthomonas oryzae pv. oryzae Pathotype Defeats the Rice Bacterial Blight Resistance Gene xa13 Without Inducing a Clade III SWEET Gene and Is Nearly Identical to a Recent Thai Isolate.

Carpenter SCD, Mishra P, Ghoshal C, Dash PK, Wang L, Midha S, Laha GS, Lore JS, Kositratana W, Singh NK, Singh K, Patil PB, Oliva R, Patarapuwadol S, Bogdanove AJ, Rai R.

Front Microbiol. 2018 Nov 13;9:2703. doi: 10.3389/fmicb.2018.02703. eCollection 2018.

3.

Convergent Evolution of Effector Protease Recognition by Arabidopsis and Barley.

Carter ME, Helm M, Chapman AVE, Wan E, Restrepo Sierra AM, Innes RW, Bogdanove AJ, Wise RP.

Mol Plant Microbe Interact. 2019 May;32(5):550-565. doi: 10.1094/MPMI-07-18-0202-FI. Epub 2019 Apr 1.

PMID:
30480480
4.

Functional analysis of African Xanthomonas oryzae pv. oryzae TALomes reveals a new susceptibility gene in bacterial leaf blight of rice.

Tran TT, Pérez-Quintero AL, Wonni I, Carpenter SCD, Yu Y, Wang L, Leach JE, Verdier V, Cunnac S, Bogdanove AJ, Koebnik R, Hutin M, Szurek B.

PLoS Pathog. 2018 Jun 4;14(6):e1007092. doi: 10.1371/journal.ppat.1007092. eCollection 2018 Jun.

5.

A Confounding Effect of Bacterial Titer in a Type III Delivery-Based Assay of Eukaryotic Effector Function.

Carter ME, Bogdanove AJ, Innes RW, Wise RP.

Mol Plant Microbe Interact. 2018 Nov;31(11):1115-1116. doi: 10.1094/MPMI-05-18-0128-LE. Epub 2018 Sep 12.

PMID:
29767549
6.

Engineering altered protein-DNA recognition specificity.

Bogdanove AJ, Bohm A, Miller JC, Morgan RD, Stoddard BL.

Nucleic Acids Res. 2018 Jun 1;46(10):4845-4871. doi: 10.1093/nar/gky289. Review.

7.

Two ancestral genes shaped the Xanthomonas campestris TAL effector gene repertoire.

Denancé N, Szurek B, Doyle EL, Lauber E, Fontaine-Bodin L, Carrère S, Guy E, Hajri A, Cerutti A, Boureau T, Poussier S, Arlat M, Bogdanove AJ, Noël LD.

New Phytol. 2018 Jul;219(1):391-407. doi: 10.1111/nph.15148. Epub 2018 Apr 20.

8.

Genetic mapping of a major gene in triticale conferring resistance to bacterial leaf streak.

Wen A, Jayawardana M, Fiedler J, Sapkota S, Shi G, Peng Z, Liu S, White FF, Bogdanove AJ, Li X, Liu Z.

Theor Appl Genet. 2018 Mar;131(3):649-658. doi: 10.1007/s00122-017-3026-x. Epub 2017 Dec 7.

PMID:
29218377
9.

Complete Genome Sequencing and Targeted Mutagenesis Reveal Virulence Contributions of Tal2 and Tal4b of Xanthomonas translucens pv. undulosa ICMP11055 in Bacterial Leaf Streak of Wheat.

Falahi Charkhabi N, Booher NJ, Peng Z, Wang L, Rahimian H, Shams-Bakhsh M, Liu Z, Liu S, White FF, Bogdanove AJ.

Front Microbiol. 2017 Aug 10;8:1488. doi: 10.3389/fmicb.2017.01488. eCollection 2017.

10.

TAL effector driven induction of a SWEET gene confers susceptibility to bacterial blight of cotton.

Cox KL, Meng F, Wilkins KE, Li F, Wang P, Booher NJ, Carpenter SCD, Chen LQ, Zheng H, Gao X, Zheng Y, Fei Z, Yu JZ, Isakeit T, Wheeler T, Frommer WB, He P, Bogdanove AJ, Shan L.

Nat Commun. 2017 May 24;8:15588. doi: 10.1038/ncomms15588.

11.

The effect of increasing numbers of repeats on TAL effector DNA binding specificity.

Rinaldi FC, Doyle LA, Stoddard BL, Bogdanove AJ.

Nucleic Acids Res. 2017 Jun 20;45(11):6960-6970. doi: 10.1093/nar/gkx342.

12.

TAL Effectors Drive Transcription Bidirectionally in Plants.

Wang L, Rinaldi FC, Singh P, Doyle EL, Dubrow ZE, Tran TT, Pérez-Quintero AL, Szurek B, Bogdanove AJ.

Mol Plant. 2017 Feb 13;10(2):285-296. doi: 10.1016/j.molp.2016.12.002. Epub 2016 Dec 10.

13.

Suppression of Xo1-Mediated Disease Resistance in Rice by a Truncated, Non-DNA-Binding TAL Effector of Xanthomonas oryzae.

Read AC, Rinaldi FC, Hutin M, He YQ, Triplett LR, Bogdanove AJ.

Front Plant Sci. 2016 Oct 13;7:1516. eCollection 2016.

14.

Effector Diversification Contributes to Xanthomonas oryzae pv. oryzae Phenotypic Adaptation in a Semi-Isolated Environment.

Quibod IL, Perez-Quintero A, Booher NJ, Dossa GS, Grande G, Szurek B, Vera Cruz C, Bogdanove AJ, Oliva R.

Sci Rep. 2016 Sep 26;6:34137. doi: 10.1038/srep34137.

15.

A resistance locus in the American heirloom rice variety Carolina Gold Select is triggered by TAL effectors with diverse predicted targets and is effective against African strains of Xanthomonas oryzae pv. oryzicola.

Triplett LR, Cohen SP, Heffelfinger C, Schmidt CL, Huerta AI, Tekete C, Verdier V, Bogdanove AJ, Leach JE.

Plant J. 2016 Sep;87(5):472-83. doi: 10.1111/tpj.13212. Epub 2016 Aug 2.

16.

Single molecule real-time sequencing of Xanthomonas oryzae genomes reveals a dynamic structure and complex TAL (transcription activator-like) effector gene relationships.

Booher NJ, Carpenter SC, Sebra RP, Wang L, Salzberg SL, Leach JE, Bogdanove AJ.

Microb Genom. 2015 Oct;1(4). doi: 10.1099/mgen.0.000032. Epub 2015 Oct 13.

17.

A transcription activator-like effector from Xanthomonas oryzae pv. oryzicola elicits dose-dependent resistance in rice.

Hummel AW, Wilkins KE, Wang L, Cernadas RA, Bogdanove AJ.

Mol Plant Pathol. 2017 Jan;18(1):55-66. doi: 10.1111/mpp.12377. Epub 2016 Apr 21.

PMID:
26821568
18.

Online Tools for TALEN Design.

Bogdanove AJ, Booher NJ.

Methods Mol Biol. 2016;1338:43-7. doi: 10.1007/978-1-4939-2932-0_4.

PMID:
26443212
20.

Broadly Conserved Fungal Effector BEC1019 Suppresses Host Cell Death and Enhances Pathogen Virulence in Powdery Mildew of Barley (Hordeum vulgare L.).

Whigham E, Qi S, Mistry D, Surana P, Xu R, Fuerst G, Pliego C, Bindschedler LV, Spanu PD, Dickerson JA, Innes RW, Nettleton D, Bogdanove AJ, Wise RP.

Mol Plant Microbe Interact. 2015 Sep;28(9):968-83. doi: 10.1094/MPMI-02-15-0027-FI. Epub 2015 Aug 26.

21.

An ent-kaurene-derived diterpenoid virulence factor from Xanthomonas oryzae pv. oryzicola.

Lu X, Hershey DM, Wang L, Bogdanove AJ, Peters RJ.

New Phytol. 2015 Apr;206(1):295-302. doi: 10.1111/nph.13187. Epub 2014 Nov 18.

22.

Tools for TAL effector design and target prediction.

Booher NJ, Bogdanove AJ.

Methods. 2014 Sep;69(2):121-7. doi: 10.1016/j.ymeth.2014.06.006. Epub 2014 Jun 27. Review.

23.

Principles and applications of TAL effectors for plant physiology and metabolism.

Bogdanove AJ.

Curr Opin Plant Biol. 2014 Jun;19:99-104. doi: 10.1016/j.pbi.2014.05.007. Epub 2014 Jun 5.

24.

The I-TevI nuclease and linker domains contribute to the specificity of monomeric TALENs.

Kleinstiver BP, Wang L, Wolfs JM, Kolaczyk T, McDowell B, Wang X, Schild-Poulter C, Bogdanove AJ, Edgell DR.

G3 (Bethesda). 2014 Apr 16;4(6):1155-65. doi: 10.1534/g3.114.011445.

25.

Code-assisted discovery of TAL effector targets in bacterial leaf streak of rice reveals contrast with bacterial blight and a novel susceptibility gene.

Cernadas RA, Doyle EL, Niño-Liu DO, Wilkins KE, Bancroft T, Wang L, Schmidt CL, Caldo R, Yang B, White FF, Nettleton D, Wise RP, Bogdanove AJ.

PLoS Pathog. 2014 Feb 27;10(2):e1003972. doi: 10.1371/journal.ppat.1003972. eCollection 2014 Feb. Erratum in: PLoS Pathog. 2014 Apr;10(4):e1004126.

26.

TAL effector specificity for base 0 of the DNA target is altered in a complex, effector- and assay-dependent manner by substitutions for the tryptophan in cryptic repeat -1.

Doyle EL, Hummel AW, Demorest ZL, Starker CG, Voytas DF, Bradley P, Bogdanove AJ.

PLoS One. 2013 Dec 3;8(12):e82120. doi: 10.1371/journal.pone.0082120. eCollection 2013.

27.

TAL effectors: highly adaptable phytobacterial virulence factors and readily engineered DNA-targeting proteins.

Doyle EL, Stoddard BL, Voytas DF, Bogdanove AJ.

Trends Cell Biol. 2013 Aug;23(8):390-8. doi: 10.1016/j.tcb.2013.04.003. Epub 2013 May 23. Review.

28.

TALEN-mediated editing of the mouse Y chromosome.

Wang H, Hu YC, Markoulaki S, Welstead GG, Cheng AW, Shivalila CS, Pyntikova T, Dadon DB, Voytas DF, Bogdanove AJ, Page DC, Jaenisch R.

Nat Biotechnol. 2013 Jun;31(6):530-2. doi: 10.1038/nbt.2595. Epub 2013 May 12.

29.

Arabidopsis and Brachypodium distachyon transgenic plants expressing Aspergillus nidulans acetylesterases have decreased degree of polysaccharide acetylation and increased resistance to pathogens.

Pogorelko G, Lionetti V, Fursova O, Sundaram RM, Qi M, Whitham SA, Bogdanove AJ, Bellincampi D, Zabotina OA.

Plant Physiol. 2013 May;162(1):9-23. doi: 10.1104/pp.113.214460. Epub 2013 Mar 5.

30.

Host-induced gene silencing in barley powdery mildew reveals a class of ribonuclease-like effectors.

Pliego C, Nowara D, Bonciani G, Gheorghe DM, Xu R, Surana P, Whigham E, Nettleton D, Bogdanove AJ, Wise RP, Schweizer P, Bindschedler LV, Spanu PD.

Mol Plant Microbe Interact. 2013 Jun;26(6):633-42. doi: 10.1094/MPMI-01-13-0005-R.

31.

Requirement of the lipopolysaccharide O-chain biosynthesis gene wxocB for type III secretion and virulence of Xanthomonas oryzae pv. Oryzicola.

Wang L, Vinogradov EV, Bogdanove AJ.

J Bacteriol. 2013 May;195(9):1959-69. doi: 10.1128/JB.02299-12. Epub 2013 Feb 22.

32.

Translating the genomics revolution: the need for an international gene therapy consortium for monogenic diseases.

Tremblay JP, Xiao X, Aartsma-Rus A, Barbas C, Blau HM, Bogdanove AJ, Boycott K, Braun S, Breakefield XO, Bueren JA, Buschmann M, Byrne BJ, Calos M, Cathomen T, Chamberlain J, Chuah M, Cornetta K, Davies KE, Dickson JG, Duchateau P, Flotte TR, Gaudet D, Gersbach CA, Gilbert R, Glorioso J, Herzog RW, High KA, Huang W, Huard J, Joung JK, Liu D, Liu D, Lochmüller H, Lustig L, Martens J, Massie B, Mavilio F, Mendell JR, Nathwani A, Ponder K, Porteus M, Puymirat J, Samulski J, Takeda S, Thrasher A, VandenDriessche T, Wei Y, Wilson JM, Wilton SD, Wolfe JH, Gao G.

Mol Ther. 2013 Feb;21(2):266-8. doi: 10.1038/mt.2013.4. No abstract available.

33.

TAL effectors: function, structure, engineering and applications.

Mak AN, Bradley P, Bogdanove AJ, Stoddard BL.

Curr Opin Struct Biol. 2013 Feb;23(1):93-9. doi: 10.1016/j.sbi.2012.11.001. Epub 2012 Dec 22. Review.

34.

Transcription activator-like effector nucleases enable efficient plant genome engineering.

Zhang Y, Zhang F, Li X, Baller JA, Qi Y, Starker CG, Bogdanove AJ, Voytas DF.

Plant Physiol. 2013 Jan;161(1):20-7. doi: 10.1104/pp.112.205179. Epub 2012 Nov 2.

35.

Transcription activator-like (TAL) effectors targeting OsSWEET genes enhance virulence on diverse rice (Oryza sativa) varieties when expressed individually in a TAL effector-deficient strain of Xanthomonas oryzae.

Verdier V, Triplett LR, Hummel AW, Corral R, Cernadas RA, Schmidt CL, Bogdanove AJ, Leach JE.

New Phytol. 2012 Dec;196(4):1197-207. doi: 10.1111/j.1469-8137.2012.04367.x. Epub 2012 Oct 18.

36.

Targeting G with TAL effectors: a comparison of activities of TALENs constructed with NN and NK repeat variable di-residues.

Christian ML, Demorest ZL, Starker CG, Osborn MJ, Nyquist MD, Zhang Y, Carlson DF, Bradley P, Bogdanove AJ, Voytas DF.

PLoS One. 2012;7(9):e45383. doi: 10.1371/journal.pone.0045383. Epub 2012 Sep 24.

37.
38.

TAL Effector-Nucleotide Targeter (TALE-NT) 2.0: tools for TAL effector design and target prediction.

Doyle EL, Booher NJ, Standage DS, Voytas DF, Brendel VP, Vandyk JK, Bogdanove AJ.

Nucleic Acids Res. 2012 Jul;40(Web Server issue):W117-22. doi: 10.1093/nar/gks608. Epub 2012 Jun 12.

39.

The crystal structure of TAL effector PthXo1 bound to its DNA target.

Mak AN, Bradley P, Cernadas RA, Bogdanove AJ, Stoddard BL.

Science. 2012 Feb 10;335(6069):716-9. doi: 10.1126/science.1216211. Epub 2012 Jan 5.

40.

TAL effectors: customizable proteins for DNA targeting.

Bogdanove AJ, Voytas DF.

Science. 2011 Sep 30;333(6051):1843-6. doi: 10.1126/science.1204094. Review.

PMID:
21960622
41.

Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp.

Bogdanove AJ, Koebnik R, Lu H, Furutani A, Angiuoli SV, Patil PB, Van Sluys MA, Ryan RP, Meyer DF, Han SW, Aparna G, Rajaram M, Delcher AL, Phillippy AM, Puiu D, Schatz MC, Shumway M, Sommer DD, Trapnell C, Benahmed F, Dimitrov G, Madupu R, Radune D, Sullivan S, Jha G, Ishihara H, Lee SW, Pandey A, Sharma V, Sriariyanun M, Szurek B, Vera-Cruz CM, Dorman KS, Ronald PC, Verdier V, Dow JM, Sonti RV, Tsuge S, Brendel VP, Rabinowicz PD, Leach JE, White FF, Salzberg SL.

J Bacteriol. 2011 Oct;193(19):5450-64. doi: 10.1128/JB.05262-11. Epub 2011 Jul 22.

42.

Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting.

Cermak T, Doyle EL, Christian M, Wang L, Zhang Y, Schmidt C, Baller JA, Somia NV, Bogdanove AJ, Voytas DF.

Nucleic Acids Res. 2011 Jul;39(12):e82. doi: 10.1093/nar/gkr218. Epub 2011 Apr 14. Erratum in: Nucleic Acids Res. 2011 Sep 1;39(17):7879.

43.

Pathogenomics of Xanthomonas: understanding bacterium-plant interactions.

Ryan RP, Vorhölter FJ, Potnis N, Jones JB, Van Sluys MA, Bogdanove AJ, Dow JM.

Nat Rev Microbiol. 2011 May;9(5):344-55. doi: 10.1038/nrmicro2558. Epub 2011 Apr 11. Review.

PMID:
21478901
44.

Targeting DNA double-strand breaks with TAL effector nucleases.

Christian M, Cermak T, Doyle EL, Schmidt C, Zhang F, Hummel A, Bogdanove AJ, Voytas DF.

Genetics. 2010 Oct;186(2):757-61. doi: 10.1534/genetics.110.120717. Epub 2010 Jul 26.

45.

TAL effectors: finding plant genes for disease and defense.

Bogdanove AJ, Schornack S, Lahaye T.

Curr Opin Plant Biol. 2010 Aug;13(4):394-401. doi: 10.1016/j.pbi.2010.04.010. Epub 2010 Jun 1. Review.

PMID:
20570209
46.

A simple cipher governs DNA recognition by TAL effectors.

Moscou MJ, Bogdanove AJ.

Science. 2009 Dec 11;326(5959):1501. doi: 10.1126/science.1178817.

47.

Acquisition and evolution of plant pathogenesis-associated gene clusters and candidate determinants of tissue-specificity in xanthomonas.

Lu H, Patil P, Van Sluys MA, White FF, Ryan RP, Dow JM, Rabinowicz P, Salzberg SL, Leach JE, Sonti R, Brendel V, Bogdanove AJ.

PLoS One. 2008;3(11):e3828. doi: 10.1371/journal.pone.0003828. Epub 2008 Nov 27.

48.

Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A.

Salzberg SL, Sommer DD, Schatz MC, Phillippy AM, Rabinowicz PD, Tsuge S, Furutani A, Ochiai H, Delcher AL, Kelley D, Madupu R, Puiu D, Radune D, Shumway M, Trapnell C, Aparna G, Jha G, Pandey A, Patil PB, Ishihara H, Meyer DF, Szurek B, Verdier V, Koebnik R, Dow JM, Ryan RP, Hirata H, Tsuyumu S, Won Lee S, Seo YS, Sriariyanum M, Ronald PC, Sonti RV, Van Sluys MA, Leach JE, White FF, Bogdanove AJ.

BMC Genomics. 2008 May 1;9:204. doi: 10.1186/1471-2164-9-204. Erratum in: BMC Genomics. 2008;9:534.. Seo, Young-Su [added]; Sriariyanum, Malinee [added].

50.

Novel candidate virulence factors in rice pathogen Xanthomonas oryzae pv. oryzicola as revealed by mutational analysis.

Wang L, Makino S, Subedee A, Bogdanove AJ.

Appl Environ Microbiol. 2007 Dec;73(24):8023-7. Epub 2007 Nov 2.

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