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Items: 21


Atlas of Subcellular RNA Localization Revealed by APEX-Seq.

Fazal FM, Han S, Parker KR, Kaewsapsak P, Xu J, Boettiger AN, Chang HY, Ting AY.

Cell. 2019 Jul 11;178(2):473-490.e26. doi: 10.1016/j.cell.2019.05.027. Epub 2019 Jun 20.


Visualizing DNA folding and RNA in embryos at single-cell resolution.

Mateo LJ, Murphy SE, Hafner A, Cinquini IS, Walker CA, Boettiger AN.

Nature. 2019 Apr;568(7750):49-54. doi: 10.1038/s41586-019-1035-4. Epub 2019 Mar 18.


Super-resolution chromatin tracing reveals domains and cooperative interactions in single cells.

Bintu B, Mateo LJ, Su JH, Sinnott-Armstrong NA, Parker M, Kinrot S, Yamaya K, Boettiger AN, Zhuang X.

Science. 2018 Oct 26;362(6413). pii: eaau1783. doi: 10.1126/science.aau1783.


In Situ Super-Resolution Imaging of Genomic DNA with OligoSTORM and OligoDNA-PAINT.

Beliveau BJ, Boettiger AN, Nir G, Bintu B, Yin P, Zhuang X, Wu CT.

Methods Mol Biol. 2017;1663:231-252. doi: 10.1007/978-1-4939-7265-4_19.


Spatial organization shapes the turnover of a bacterial transcriptome.

Moffitt JR, Pandey S, Boettiger AN, Wang S, Zhuang X.

Elife. 2016 May 20;5. pii: e13065. doi: 10.7554/eLife.13065.


Super-resolution imaging reveals distinct chromatin folding for different epigenetic states.

Boettiger AN, Bintu B, Moffitt JR, Wang S, Beliveau BJ, Fudenberg G, Imakaev M, Mirny LA, Wu CT, Zhuang X.

Nature. 2016 Jan 21;529(7586):418-22. doi: 10.1038/nature16496. Epub 2016 Jan 13.


Chromatin topology is coupled to Polycomb group protein subnuclear organization.

Wani AH, Boettiger AN, Schorderet P, Ergun A, Münger C, Sadreyev RI, Zhuang X, Kingston RE, Francis NJ.

Nat Commun. 2016 Jan 13;7:10291. doi: 10.1038/ncomms10291.


Single-molecule super-resolution imaging of chromosomes and in situ haplotype visualization using Oligopaint FISH probes.

Beliveau BJ, Boettiger AN, Avendaño MS, Jungmann R, McCole RB, Joyce EF, Kim-Kiselak C, Bantignies F, Fonseka CY, Erceg J, Hannan MA, Hoang HG, Colognori D, Lee JT, Shih WM, Yin P, Zhuang X, Wu CT.

Nat Commun. 2015 May 12;6:7147. doi: 10.1038/ncomms8147.


RNA imaging. Spatially resolved, highly multiplexed RNA profiling in single cells.

Chen KH, Boettiger AN, Moffitt JR, Wang S, Zhuang X.

Science. 2015 Apr 24;348(6233):aaa6090. doi: 10.1126/science.aaa6090. Epub 2015 Apr 9.


Analytic approaches to stochastic gene expression in multicellular systems.

Boettiger AN.

Biophys J. 2013 Dec 17;105(12):2629-40. doi: 10.1016/j.bpj.2013.10.033. Review.


Rapid transcription fosters coordinate snail expression in the Drosophila embryo.

Boettiger AN, Levine M.

Cell Rep. 2013 Jan 31;3(1):8-15. doi: 10.1016/j.celrep.2012.12.015. Epub 2013 Jan 24.


Inferring ecological and behavioral drivers of African elephant movement using a linear filtering approach.

Boettiger AN, Wittemyer G, Starfield R, Volrath F, Douglas-Hamilton I, Getz WM.

Ecology. 2011 Aug;92(8):1648-57.


Multiple enhancers ensure precision of gap gene-expression patterns in the Drosophila embryo.

Perry MW, Boettiger AN, Levine M.

Proc Natl Acad Sci U S A. 2011 Aug 16;108(33):13570-5. doi: 10.1073/pnas.1109873108. Epub 2011 Aug 8.


Transcriptional regulation: effects of promoter proximal pausing on speed, synchrony and reliability.

Boettiger AN, Ralph PL, Evans SN.

PLoS Comput Biol. 2011 May;7(5):e1001136. doi: 10.1371/journal.pcbi.1001136. Epub 2011 May 12.


Shadow enhancers foster robustness of Drosophila gastrulation.

Perry MW, Boettiger AN, Bothma JP, Levine M.

Curr Biol. 2010 Sep 14;20(17):1562-7. doi: 10.1016/j.cub.2010.07.043.


Emergent complexity in simple neural systems.

Boettiger AN, Oster G.

Commun Integr Biol. 2009 Nov;2(6):467-70.


Evolution of insect dorsoventral patterning mechanisms.

Perry MW, Cande JD, Boettiger AN, Levine M.

Cold Spring Harb Symp Quant Biol. 2009;74:275-9. doi: 10.1101/sqb.2009.74.021. Epub 2009 Oct 20. Review.


Synchronous and stochastic patterns of gene activation in the Drosophila embryo.

Boettiger AN, Levine M.

Science. 2009 Jul 24;325(5939):471-3. doi: 10.1126/science.1173976.


Nuclear trapping shapes the terminal gradient in the Drosophila embryo.

Coppey M, Boettiger AN, Berezhkovskii AM, Shvartsman SY.

Curr Biol. 2008 Jun 24;18(12):915-9. doi: 10.1016/j.cub.2008.05.034.


Modeling the bicoid gradient: diffusion and reversible nuclear trapping of a stable protein.

Coppey M, Berezhkovskii AM, Kim Y, Boettiger AN, Shvartsman SY.

Dev Biol. 2007 Dec 15;312(2):623-30. Epub 2007 Oct 6. Erratum in: Dev Biol. 2008 Apr 15;316(2):548.


Role of boundary conditions in an experimental model of epithelial wound healing.

Nikolić DL, Boettiger AN, Bar-Sagi D, Carbeck JD, Shvartsman SY.

Am J Physiol Cell Physiol. 2006 Jul;291(1):C68-75. Epub 2006 Feb 22.

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