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Items: 13

1.

Physical and Functional Analysis of Viral RNA Genomes by SHAPE.

Boerneke MA, Ehrhardt JE, Weeks KM.

Annu Rev Virol. 2019 Jul 23. doi: 10.1146/annurev-virology-092917-043315. [Epub ahead of print]

PMID:
31337286
2.

High-Throughput Explorations of RNA Structural Modularity.

Boerneke MA, Weeks KM.

Biochemistry. 2018 Oct 30;57(43):6129-6131. doi: 10.1021/acs.biochem.8b00999. Epub 2018 Oct 15. No abstract available.

PMID:
30373370
3.

Pervasive tertiary structure in the dengue virus RNA genome.

Dethoff EA, Boerneke MA, Gokhale NS, Muhire BM, Martin DP, Sacco MT, McFadden MJ, Weinstein JB, Messer WB, Horner SM, Weeks KM.

Proc Natl Acad Sci U S A. 2018 Nov 6;115(45):11513-11518. doi: 10.1073/pnas.1716689115. Epub 2018 Oct 19.

4.

Design and Crystallography of Self-Assembling RNA Nanostructures.

Boerneke MA, Hermann T.

Methods Mol Biol. 2017;1632:135-149. doi: 10.1007/978-1-4939-7138-1_9.

PMID:
28730437
5.

Structure of the Ribosomal RNA Decoding Site Containing a Selenium-Modified Responsive Fluorescent Ribonucleoside Probe.

Nuthanakanti A, Boerneke MA, Hermann T, Srivatsan SG.

Angew Chem Int Ed Engl. 2017 Mar 1;56(10):2640-2644. doi: 10.1002/anie.201611700. Epub 2017 Feb 3.

6.

Ligand Optimization by Improving Shape Complementarity at a Hepatitis C Virus RNA Target.

Charrette BP, Boerneke MA, Hermann T.

ACS Chem Biol. 2016 Dec 16;11(12):3263-3267. Epub 2016 Oct 27.

PMID:
27775338
7.

Crystal-Structure-Guided Design of Self-Assembling RNA Nanotriangles.

Boerneke MA, Dibrov SM, Hermann T.

Angew Chem Int Ed Engl. 2016 Mar 14;55(12):4097-100. doi: 10.1002/anie.201600233. Epub 2016 Feb 23.

8.

Conformational flexibility of viral RNA switches studied by FRET.

Boerneke MA, Hermann T.

Methods. 2015 Dec;91:35-39. doi: 10.1016/j.ymeth.2015.09.013. Epub 2015 Sep 14.

9.

Ligand-responsive RNA mechanical switches.

Boerneke MA, Hermann T.

RNA Biol. 2015;12(8):780-6. doi: 10.1080/15476286.2015.1054592.

10.

Functional conservation despite structural divergence in ligand-responsive RNA switches.

Boerneke MA, Dibrov SM, Gu J, Wyles DL, Hermann T.

Proc Natl Acad Sci U S A. 2014 Nov 11;111(45):15952-7. doi: 10.1073/pnas.1414678111. Epub 2014 Oct 27.

11.

2-Aminobenzoxazole ligands of the hepatitis C virus internal ribosome entry site.

Rynearson KD, Charrette B, Gabriel C, Moreno J, Boerneke MA, Dibrov SM, Hermann T.

Bioorg Med Chem Lett. 2014 Aug 1;24(15):3521-5. doi: 10.1016/j.bmcl.2014.05.088. Epub 2014 Jun 4.

12.

Aryl-substituted aminobenzimidazoles targeting the hepatitis C virus internal ribosome entry site.

Ding K, Wang A, Boerneke MA, Dibrov SM, Hermann T.

Bioorg Med Chem Lett. 2014 Jul 15;24(14):3113-7. doi: 10.1016/j.bmcl.2014.05.009. Epub 2014 May 14.

13.

Hepatitis C virus translation inhibitors targeting the internal ribosomal entry site.

Dibrov SM, Parsons J, Carnevali M, Zhou S, Rynearson KD, Ding K, Garcia Sega E, Brunn ND, Boerneke MA, Castaldi MP, Hermann T.

J Med Chem. 2014 Mar 13;57(5):1694-707. doi: 10.1021/jm401312n. Epub 2013 Nov 5. Review.

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