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Items: 6

1.

Probing the genome-scale metabolic landscape of Bordetella pertussis, the causative agent of whooping cough.

Branco Dos Santos F, Olivier BG, Boele J, Smessaert V, De Rop P, Krumpochova P, Klau GW, Giera M, Dehottay P, Teusink B, Goffin P.

Appl Environ Microbiol. 2017 Aug 25. pii: AEM.01528-17. doi: 10.1128/AEM.01528-17. [Epub ahead of print]

2.

PAPD5-mediated 3' adenylation and subsequent degradation of miR-21 is disrupted in proliferative disease.

Boele J, Persson H, Shin JW, Ishizu Y, Newie IS, S√łkilde R, Hawkins SM, Coarfa C, Ikeda K, Takayama K, Horie-Inoue K, Ando Y, Burroughs AM, Sasaki C, Suzuki C, Sakai M, Aoki S, Ogawa A, Hasegawa A, Lizio M, Kaida K, Teusink B, Carninci P, Suzuki H, Inoue S, Gunaratne PH, Rovira C, Hayashizaki Y, de Hoon MJ.

Proc Natl Acad Sci U S A. 2014 Aug 5;111(31):11467-72. doi: 10.1073/pnas.1317751111. Epub 2014 Jul 21.

3.

Systemic identification of estrogen-regulated genes in breast cancer cells through cap analysis of gene expression mapping.

Yamaga R, Ikeda K, Boele J, Horie-Inoue K, Takayama K, Urano T, Kaida K, Carninci P, Kawai J, Hayashizaki Y, Ouchi Y, de Hoon M, Inoue S.

Biochem Biophys Res Commun. 2014 May 9;447(3):531-6. doi: 10.1016/j.bbrc.2014.04.033. Epub 2014 Apr 16.

PMID:
24746470
4.

A data integration and visualization resource for the metabolic network of Synechocystis sp. PCC 6803.

Maarleveld TR, Boele J, Bruggeman FJ, Teusink B.

Plant Physiol. 2014 Mar;164(3):1111-21. doi: 10.1104/pp.113.224394. Epub 2014 Jan 8.

5.

FAME, the Flux Analysis and Modeling Environment.

Boele J, Olivier BG, Teusink B.

BMC Syst Biol. 2012 Jan 30;6:8. doi: 10.1186/1752-0509-6-8.

6.

A practical guide to genome-scale metabolic models and their analysis.

Santos F, Boele J, Teusink B.

Methods Enzymol. 2011;500:509-32. doi: 10.1016/B978-0-12-385118-5.00024-4.

PMID:
21943912

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