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Items: 11

1.

Breast cancer quantitative proteome and proteogenomic landscape.

Johansson HJ, Socciarelli F, Vacanti NM, Haugen MH, Zhu Y, Siavelis I, Fernandez-Woodbridge A, Aure MR, Sennblad B, Vesterlund M, Branca RM, Orre LM, Huss M, Fredlund E, Beraki E, Garred Ø, Boekel J, Sauer T, Zhao W, Nord S, Höglander EK, Jans DC, Brismar H, Haukaas TH, Bathen TF, Schlichting E, Naume B; Consortia Oslo Breast Cancer Research Consortium (OSBREAC), Luders T, Borgen E, Kristensen VN, Russnes HG, Lingjærde OC, Mills GB, Sahlberg KK, Børresen-Dale AL, Lehtiö J.

Nat Commun. 2019 Apr 8;10(1):1600. doi: 10.1038/s41467-019-09018-y.

2.

In-depth human plasma proteome analysis captures tissue proteins and transfer of protein variants across the placenta.

Pernemalm M, Sandberg A, Zhu Y, Boekel J, Tamburro D, Schwenk JM, Björk A, Wahren-Herlenius M, Åmark H, Östenson CG, Westgren M, Lehtiö J.

Elife. 2019 Apr 8;8. pii: e41608. doi: 10.7554/eLife.41608.

3.

Publisher Correction: Discovery of coding regions in the human genome by integrated proteogenomics analysis workflow.

Zhu Y, Orre LM, Johansson HJ, Huss M, Boekel J, Vesterlund M, Fernandez-Woodbridge A, Branca RMM, Lehtiö J.

Nat Commun. 2018 May 8;9(1):1852. doi: 10.1038/s41467-018-04279-5.

4.

Discovery of coding regions in the human genome by integrated proteogenomics analysis workflow.

Zhu Y, Orre LM, Johansson HJ, Huss M, Boekel J, Vesterlund M, Fernandez-Woodbridge A, Branca RMM, Lehtiö J.

Nat Commun. 2018 Mar 2;9(1):903. doi: 10.1038/s41467-018-03311-y. Erratum in: Nat Commun. 2018 May 8;9(1):1852.

5.

microRNAs with AAGUGC seed motif constitute an integral part of an oncogenic signaling network.

Zhou Y, Frings O, Branca RM, Boekel J, le Sage C, Fredlund E, Agami R, Orre LM.

Oncogene. 2017 Feb 9;36(6):731-745. doi: 10.1038/onc.2016.242. Epub 2016 Aug 1.

6.

Multi-omic data analysis using Galaxy.

Boekel J, Chilton JM, Cooke IR, Horvatovich PL, Jagtap PD, Käll L, Lehtiö J, Lukasse P, Moerland PD, Griffin TJ.

Nat Biotechnol. 2015 Feb;33(2):137-9. doi: 10.1038/nbt.3134. No abstract available.

PMID:
25658277
7.

Comparative tissue transcriptomics reveal prompt inter-organ communication in response to local bacterial kidney infection.

Boekel J, Källskog O, Rydén-Aulin M, Rhen M, Richter-Dahlfors A.

BMC Genomics. 2011 Feb 21;12:123. doi: 10.1186/1471-2164-12-123.

8.

Novel innate immune functions revealed by dynamic, real-time live imaging of bacterial infections.

Melican K, Boekel J, Ryden-Aulin M, Richter-Dahlfors A.

Crit Rev Immunol. 2010;30(2):107-17. Review.

PMID:
20370624
9.

Bacterial infection-mediated mucosal signalling induces local renal ischaemia as a defence against sepsis.

Melican K, Boekel J, Månsson LE, Sandoval RM, Tanner GA, Källskog O, Palm F, Molitoris BA, Richter-Dahlfors A.

Cell Microbiol. 2008 Oct;10(10):1987-98. doi: 10.1111/j.1462-5822.2008.01182.x. Epub 2008 Jun 28.

PMID:
18549455
10.

Real-time studies of the progression of bacterial infections and immediate tissue responses in live animals.

Månsson LE, Melican K, Boekel J, Sandoval RM, Hautefort I, Tanner GA, Molitoris BA, Richter-Dahlfors A.

Cell Microbiol. 2007 Feb;9(2):413-24. Epub 2006 Aug 1.

PMID:
16953802
11.

Recognition of transmembrane helices by the endoplasmic reticulum translocon.

Hessa T, Kim H, Bihlmaier K, Lundin C, Boekel J, Andersson H, Nilsson I, White SH, von Heijne G.

Nature. 2005 Jan 27;433(7024):377-81.

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