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Items: 1 to 50 of 68

1.

Phonon transport across crystal-phase interfaces and twin boundaries in semiconducting nanowires.

Carrete J, López-Suárez M, Raya-Moreno M, Bochkarev AS, Royo M, Madsen GKH, Cartoixà X, Mingo N, Rurali R.

Nanoscale. 2019 Aug 19. doi: 10.1039/c9nr05274g. [Epub ahead of print]

PMID:
31424472
2.

[The mutation of genes of hemostasis system in patients with venous cerebral angiodystonia against the background of connective tissue dysplasia].

Kotovshchikova EF, Buevich EI, Pen'kova EV, Kulikov VP, Chudimov VF, Siul'zhina EN, Bogdanova IV, Bochkarev AP.

Klin Lab Diagn. 2012 Aug;(8):33-6. Russian.

PMID:
23097990
3.

Structures of human DPP7 reveal the molecular basis of specific inhibition and the architectural diversity of proline-specific peptidases.

Bezerra GA, Dobrovetsky E, Dong A, Seitova A, Crombett L, Shewchuk LM, Hassell AM, Sweitzer SM, Sweitzer TD, McDevitt PJ, Johanson KO, Kennedy-Wilson KM, Cossar D, Bochkarev A, Gruber K, Dhe-Paganon S.

PLoS One. 2012;7(8):e43019. doi: 10.1371/journal.pone.0043019. Epub 2012 Aug 29.

4.

Sequence-specific recognition of a PxLPxI/L motif by an ankyrin repeat tumbler lock.

Xu C, Jin J, Bian C, Lam R, Tian R, Weist R, You L, Nie J, Bochkarev A, Tempel W, Tan CS, Wasney GA, Vedadi M, Gish GD, Arrowsmith CH, Pawson T, Yang XJ, Min J.

Sci Signal. 2012 May 29;5(226):ra39. doi: 10.1126/scisignal.2002979.

5.

[Informative value of radiodiagnosis methods of pyelo-ureteral strictures in kidney anomaly].

Teodorovich OV, Vasil'ev AIu, Zabrodina NB, Bochkarev AB, Muchkaeva IB, Sarkhadov NSh, Kirichenko SA, Magomedov MA.

Urologiia. 2010 Mar-Apr;(2):18-21. Russian.

PMID:
20973138
6.

[Endodontic treatment of teeth with Cupral nanoimpregnation application and pins from polypropylene].

Rumiantsev VA, Nikolaian EA, Rodionova EG, Bochkarev AN, Cherdzhieva FB, Zamotaev SA.

Stomatologiia (Mosk). 2009;88(5):11-5. Russian.

PMID:
20037530
7.

[Using setegis (terasosine) in early postoperative period after transurethral prostate resection].

Teodorovich OV, Zabrodina NB, Bochkarev AB.

Urologiia. 2009 May-Jun;(3):62-4. Russian.

PMID:
19673124
8.

Circular dichroism spectra and electrophoretic mobility shift assays show that human replication protein A binds and melts intramolecular G-quadruplex structures.

Fan JH, Bochkareva E, Bochkarev A, Gray DM.

Biochemistry. 2009 Feb 10;48(5):1099-111. doi: 10.1021/bi801538h.

PMID:
19187036
9.

An intact SAM-dependent methyltransferase fold is encoded by the human endothelin-converting enzyme-2 gene.

Tempel W, Wu H, Dombrovsky L, Zeng H, Loppnau P, Zhu H, Plotnikov AN, Bochkarev A.

Proteins. 2009 Feb 15;74(3):789-93. doi: 10.1002/prot.22299. No abstract available.

PMID:
19089949
10.

High throughput crystallography at SGC Toronto: an overview.

Bochkarev A, Tempel W.

Methods Mol Biol. 2008;426:515-21. doi: 10.1007/978-1-60327-058-8_34. Review.

PMID:
18542887
11.

Human HDAC7 harbors a class IIa histone deacetylase-specific zinc binding motif and cryptic deacetylase activity.

Schuetz A, Min J, Allali-Hassani A, Schapira M, Shuen M, Loppnau P, Mazitschek R, Kwiatkowski NP, Lewis TA, Maglathin RL, McLean TH, Bochkarev A, Plotnikov AN, Vedadi M, Arrowsmith CH.

J Biol Chem. 2008 Apr 25;283(17):11355-63. doi: 10.1074/jbc.M707362200. Epub 2008 Feb 19.

12.

First crystallographic models of human TBC domains in the context of a family-wide structural analysis.

Tempel W, Tong Y, Dimov S, Bochkarev A, Park H.

Proteins. 2008 Apr;71(1):497-502. doi: 10.1002/prot.21885. No abstract available.

PMID:
18186464
13.

In situ proteolysis for protein crystallization and structure determination.

Dong A, Xu X, Edwards AM; Midwest Center for Structural Genomics; Structural Genomics Consortium, Chang C, Chruszcz M, Cuff M, Cymborowski M, Di Leo R, Egorova O, Evdokimova E, Filippova E, Gu J, Guthrie J, Ignatchenko A, Joachimiak A, Klostermann N, Kim Y, Korniyenko Y, Minor W, Que Q, Savchenko A, Skarina T, Tan K, Yakunin A, Yee A, Yim V, Zhang R, Zheng H, Akutsu M, Arrowsmith C, Avvakumov GV, Bochkarev A, Dahlgren LG, Dhe-Paganon S, Dimov S, Dombrovski L, Finerty P Jr, Flodin S, Flores A, Gräslund S, Hammerström M, Herman MD, Hong BS, Hui R, Johansson I, Liu Y, Nilsson M, Nedyalkova L, Nordlund P, Nyman T, Min J, Ouyang H, Park HW, Qi C, Rabeh W, Shen L, Shen Y, Sukumard D, Tempel W, Tong Y, Tresagues L, Vedadi M, Walker JR, Weigelt J, Welin M, Wu H, Xiao T, Zeng H, Zhu H.

Nat Methods. 2007 Dec;4(12):1019-21. Epub 2007 Nov 4.

14.

Glyoxylate and pyruvate are antagonistic effectors of the Escherichia coli IclR transcriptional regulator.

Lorca GL, Ezersky A, Lunin VV, Walker JR, Altamentova S, Evdokimova E, Vedadi M, Bochkarev A, Savchenko A.

J Biol Chem. 2007 Jun 1;282(22):16476-91. Epub 2007 Apr 10.

15.

Structural and chemical profiling of the human cytosolic sulfotransferases.

Allali-Hassani A, Pan PW, Dombrovski L, Najmanovich R, Tempel W, Dong A, Loppnau P, Martin F, Thornton J, Edwards AM, Bochkarev A, Plotnikov AN, Vedadi M, Arrowsmith CH.

PLoS Biol. 2007 May;5(5):e97. Erratum in: PLoS Biol. 2007 Jun;5(6):e165. Thonton, Janet [corrected to Thornton, Janet].

16.

Crystal structure of a binary complex between human GCN5 histone acetyltransferase domain and acetyl coenzyme A.

Schuetz A, Bernstein G, Dong A, Antoshenko T, Wu H, Loppnau P, Bochkarev A, Plotnikov AN.

Proteins. 2007 Jul 1;68(1):403-7. No abstract available.

PMID:
17410582
17.

Structural basis of inhibition of the human NAD+-dependent deacetylase SIRT5 by suramin.

Schuetz A, Min J, Antoshenko T, Wang CL, Allali-Hassani A, Dong A, Loppnau P, Vedadi M, Bochkarev A, Sternglanz R, Plotnikov AN.

Structure. 2007 Mar;15(3):377-89.

18.

The crystal structure of the SV40 T-antigen origin binding domain in complex with DNA.

Meinke G, Phelan P, Moine S, Bochkareva E, Bochkarev A, Bullock PA, Bohm A.

PLoS Biol. 2007 Feb;5(2):e23.

19.

Structural basis of allele variation of human thiopurine-S-methyltransferase.

Wu H, Horton JR, Battaile K, Allali-Hassani A, Martin F, Zeng H, Loppnau P, Vedadi M, Bochkarev A, Plotnikov AN, Cheng X.

Proteins. 2007 Apr 1;67(1):198-208.

20.

Structure of the origin-binding domain of simian virus 40 large T antigen bound to DNA.

Bochkareva E, Martynowski D, Seitova A, Bochkarev A.

EMBO J. 2006 Dec 13;25(24):5961-9. Epub 2006 Nov 30.

21.

Genome-scale protein expression and structural biology of Plasmodium falciparum and related Apicomplexan organisms.

Vedadi M, Lew J, Artz J, Amani M, Zhao Y, Dong A, Wasney GA, Gao M, Hills T, Brokx S, Qiu W, Sharma S, Diassiti A, Alam Z, Melone M, Mulichak A, Wernimont A, Bray J, Loppnau P, Plotnikova O, Newberry K, Sundararajan E, Houston S, Walker J, Tempel W, Bochkarev A, Kozieradzki I, Edwards A, Arrowsmith C, Roos D, Kain K, Hui R.

Mol Biochem Parasitol. 2007 Jan;151(1):100-10. Epub 2006 Nov 13.

PMID:
17125854
22.

Structural basis for molecular recognition and presentation of histone H3 by WDR5.

Schuetz A, Allali-Hassani A, Martín F, Loppnau P, Vedadi M, Bochkarev A, Plotnikov AN, Arrowsmith CH, Min J.

EMBO J. 2006 Sep 20;25(18):4245-52. Epub 2006 Aug 31.

23.

Crystal structures of human sulfotransferases SULT1B1 and SULT1C1 complexed with the cofactor product adenosine-3'- 5'-diphosphate (PAP).

Dombrovski L, Dong A, Bochkarev A, Plotnikov AN.

Proteins. 2006 Sep 1;64(4):1091-4. No abstract available.

PMID:
16804942
24.

Crystal structure of the CorA Mg2+ transporter.

Lunin VV, Dobrovetsky E, Khutoreskaya G, Zhang R, Joachimiak A, Doyle DA, Bochkarev A, Maguire ME, Edwards AM, Koth CM.

Nature. 2006 Apr 6;440(7085):833-7.

25.

Effects of ssDNA sequences on non-sequence-specific protein binding.

Mou TC, Shen M, Abdalla S, Delamora D, Bochkareva E, Bochkarev A, Gray DM.

Chirality. 2006 May 15;18(5):370-82.

PMID:
16575881
26.

Structural and biochemical study of effector molecule recognition by the E.coli glyoxylate and allantoin utilization regulatory protein AllR.

Walker JR, Altamentova S, Ezersky A, Lorca G, Skarina T, Kudritska M, Ball LJ, Bochkarev A, Savchenko A.

J Mol Biol. 2006 May 5;358(3):810-28. Epub 2006 Mar 3.

PMID:
16546208
27.

p53 transcriptional activation domain: a molecular chameleon?

Kaustov L, Yi GS, Ayed A, Bochkareva E, Bochkarev A, Arrowsmith CH.

Cell Cycle. 2006 Mar;5(5):489-94. Epub 2006 Mar 1. Review.

PMID:
16481746
28.

An epidemiologically significant epitope of a 1998 human influenza virus neuraminidase forms a highly hydrated interface in the NA-antibody complex.

Venkatramani L, Bochkareva E, Lee JT, Gulati U, Graeme Laver W, Bochkarev A, Air GM.

J Mol Biol. 2006 Feb 24;356(3):651-63. Epub 2005 Dec 7.

PMID:
16384583
29.

Single-stranded DNA mimicry in the p53 transactivation domain interaction with replication protein A.

Bochkareva E, Kaustov L, Ayed A, Yi GS, Lu Y, Pineda-Lucena A, Liao JC, Okorokov AL, Milner J, Arrowsmith CH, Bochkarev A.

Proc Natl Acad Sci U S A. 2005 Oct 25;102(43):15412-7. Epub 2005 Oct 17.

30.

The Shwachman-Bodian-Diamond syndrome protein family is involved in RNA metabolism.

Savchenko A, Krogan N, Cort JR, Evdokimova E, Lew JM, Yee AA, Sánchez-Pulido L, Andrade MA, Bochkarev A, Watson JD, Kennedy MA, Greenblatt J, Hughes T, Arrowsmith CH, Rommens JM, Edwards AM.

J Biol Chem. 2005 May 13;280(19):19213-20. Epub 2005 Feb 8.

31.

From RPA to BRCA2: lessons from single-stranded DNA binding by the OB-fold.

Bochkarev A, Bochkareva E.

Curr Opin Struct Biol. 2004 Feb;14(1):36-42. Review.

PMID:
15102447
32.

2'-O-methyl-modified phosphorothioate antisense oligonucleotides have reduced non-specific effects in vitro.

Yoo BH, Bochkareva E, Bochkarev A, Mou TC, Gray DM.

Nucleic Acids Res. 2004 Apr 2;32(6):2008-16. Print 2004.

33.

Human replication protein A (RPA) binds a primer-template junction in the absence of its major ssDNA-binding domains.

Pestryakov PE, Khlimankov DY, Bochkareva E, Bochkarev A, Lavrik OI.

Nucleic Acids Res. 2004 Mar 26;32(6):1894-903. Print 2004.

34.

Independent and coordinated functions of replication protein A tandem high affinity single-stranded DNA binding domains.

Arunkumar AI, Stauffer ME, Bochkareva E, Bochkarev A, Chazin WJ.

J Biol Chem. 2003 Oct 17;278(42):41077-82. Epub 2003 Jul 24.

35.

Three-dimensional structure and function of replication protein A.

Mer G, Bochkarev A, Chazin WJ, Edwards AM.

Cold Spring Harb Symp Quant Biol. 2000;65:193-200. Review. No abstract available.

PMID:
12760033
36.

Antibody epitopes on the neuraminidase of a recent H3N2 influenza virus (A/Memphis/31/98).

Gulati U, Hwang CC, Venkatramani L, Gulati S, Stray SJ, Lee JT, Laver WG, Bochkarev A, Zlotnick A, Air GM.

J Virol. 2002 Dec;76(23):12274-80.

37.

[Results of transcutaneous nephrolithotripsy using the combined lithotriptor "2 in 1" "Swiss Lithoclast Master"].

Teodorovich OV, Zabrodina NB, Dzhaber D, Kalashnikov GM, Bochkarev AB.

Urologiia. 2002 Sep-Oct;(5):44-9. Russian.

PMID:
12402777
38.

Structure of the RPA trimerization core and its role in the multistep DNA-binding mechanism of RPA.

Bochkareva E, Korolev S, Lees-Miller SP, Bochkarev A.

EMBO J. 2002 Apr 2;21(7):1855-63.

39.
40.

Structural basis for the recognition of DNA repair proteins UNG2, XPA, and RAD52 by replication factor RPA.

Mer G, Bochkarev A, Gupta R, Bochkareva E, Frappier L, Ingles CJ, Edwards AM, Chazin WJ.

Cell. 2000 Oct 27;103(3):449-56.

41.

The role for zinc in replication protein A.

Bochkareva E, Korolev S, Bochkarev A.

J Biol Chem. 2000 Sep 1;275(35):27332-8.

42.

Crystal structure of dTDP-4-keto-6-deoxy-D-hexulose 3,5-epimerase from Methanobacterium thermoautotrophicum complexed with dTDP.

Christendat D, Saridakis V, Dharamsi A, Bochkarev A, Pai EF, Arrowsmith CH, Edwards AM.

J Biol Chem. 2000 Aug 11;275(32):24608-12.

43.
44.

The 2.2 A structure of a permanganate-sensitive DNA site bound by the Epstein-Barr virus origin binding protein, EBNA1.

Bochkarev A, Bochkareva E, Frappier L, Edwards AM.

J Mol Biol. 1998 Dec 18;284(5):1273-8. Review.

PMID:
9878348
45.

Origin DNA-binding proteins.

Edwards AM, Bochkarev A, Frappier L.

Curr Opin Struct Biol. 1998 Feb;8(1):49-53. Review.

PMID:
9519296
46.

The RPA32 subunit of human replication protein A contains a single-stranded DNA-binding domain.

Bochkareva E, Frappier L, Edwards AM, Bochkarev A.

J Biol Chem. 1998 Feb 13;273(7):3932-6.

47.

Structure of the single-stranded-DNA-binding domain of replication protein A bound to DNA.

Bochkarev A, Pfuetzner RA, Edwards AM, Frappier L.

Nature. 1997 Jan 9;385(6612):176-81.

PMID:
8990123
48.

Replication protein A. Characterization and crystallization of the DNA binding domain.

Pfuetzner RA, Bochkarev A, Frappier L, Edwards AM.

J Biol Chem. 1997 Jan 3;272(1):430-4.

49.

Chiral symmetry at finite temperature: Linear versus nonlinear sigma models.

Bochkarev A, Kapusta J.

Phys Rev D Part Fields. 1996 Sep 15;54(6):4066-4079. No abstract available.

PMID:
10021085
50.

Crystal structure of the DNA-binding domain of the Epstein-Barr virus origin-binding protein, EBNA1, bound to DNA.

Bochkarev A, Barwell JA, Pfuetzner RA, Bochkareva E, Frappier L, Edwards AM.

Cell. 1996 Mar 8;84(5):791-800.

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