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Engineering the PduT shell protein to modify the permeability of the 1,2-propanediol microcompartment of Salmonella.

Chowdhury C, Bobik TA.

Microbiology. 2019 Dec;165(12):1355-1364. doi: 10.1099/mic.0.000872.


A Bacterial Microcompartment Is Used for Choline Fermentation by Escherichia coli 536.

Herring TI, Harris TN, Chowdhury C, Mohanty SK, Bobik TA.

J Bacteriol. 2018 Apr 24;200(10). pii: e00764-17. doi: 10.1128/JB.00764-17. Print 2018 May 15.


Facile methods for heterologous production of bacterial microcompartments in diverse host species.

Yeates TO, Bobik TA.

Microb Biotechnol. 2018 Jan;11(1):160-162. doi: 10.1111/1751-7915.12869. Epub 2017 Dec 4. Review. No abstract available.


Molecular Dynamics Simulations of Selective Metabolite Transport across the Propanediol Bacterial Microcompartment Shell.

Park J, Chun S, Bobik TA, Houk KN, Yeates TO.

J Phys Chem B. 2017 Aug 31;121(34):8149-8154. doi: 10.1021/acs.jpcb.7b07232. Epub 2017 Aug 22.


The N Terminus of the PduB Protein Binds the Protein Shell of the Pdu Microcompartment to Its Enzymatic Core.

Lehman BP, Chowdhury C, Bobik TA.

J Bacteriol. 2017 Mar 28;199(8). pii: e00785-16. doi: 10.1128/JB.00785-16. Print 2017 Apr 15.


Expanding the genetic code of Salmonella with non-canonical amino acids.

Gan Q, Lehman BP, Bobik TA, Fan C.

Sci Rep. 2016 Dec 23;6:39920. doi: 10.1038/srep39920.


The function of the PduJ microcompartment shell protein is determined by the genomic position of its encoding gene.

Chowdhury C, Chun S, Sawaya MR, Yeates TO, Bobik TA.

Mol Microbiol. 2016 Sep;101(5):770-83. doi: 10.1111/mmi.13423. Epub 2016 Jun 7.


Bacterial microcompartments: widespread prokaryotic organelles for isolation and optimization of metabolic pathways.

Bobik TA, Lehman BP, Yeates TO.

Mol Microbiol. 2015 Oct;98(2):193-207. doi: 10.1111/mmi.13117. Epub 2015 Aug 3. Review.


The PduL Phosphotransacylase Is Used To Recycle Coenzyme A within the Pdu Microcompartment.

Liu Y, Jorda J, Yeates TO, Bobik TA.

J Bacteriol. 2015 Jul;197(14):2392-9. doi: 10.1128/JB.00056-15. Epub 2015 May 11.


In Salmonella enterica, Ethanolamine Utilization Is Repressed by 1,2-Propanediol To Prevent Detrimental Mixing of Components of Two Different Bacterial Microcompartments.

Sturms R, Streauslin NA, Cheng S, Bobik TA.

J Bacteriol. 2015 Jul;197(14):2412-21. doi: 10.1128/JB.00215-15. Epub 2015 May 11.


Selective molecular transport through the protein shell of a bacterial microcompartment organelle.

Chowdhury C, Chun S, Pang A, Sawaya MR, Sinha S, Yeates TO, Bobik TA.

Proc Natl Acad Sci U S A. 2015 Mar 10;112(10):2990-5. doi: 10.1073/pnas.1423672112. Epub 2015 Feb 23.


Exploring bacterial organelle interactomes: a model of the protein-protein interaction network in the Pdu microcompartment.

Jorda J, Liu Y, Bobik TA, Yeates TO.

PLoS Comput Biol. 2015 Feb 3;11(2):e1004067. doi: 10.1371/journal.pcbi.1004067. eCollection 2015 Feb.


Structure of a bacterial microcompartment shell protein bound to a cobalamin cofactor.

Thompson MC, Crowley CS, Kopstein J, Bobik TA, Yeates TO.

Acta Crystallogr F Struct Biol Commun. 2014 Dec 1;70(Pt 12):1584-90. doi: 10.1107/S2053230X1402158X. Epub 2014 Nov 14.


Structure of the methanofuran/methanopterin-biosynthetic enzyme MJ1099 from Methanocaldococcus jannaschii.

Bobik TA, Morales EJ, Shin A, Cascio D, Sawaya MR, Arbing M, Yeates TO, Rasche ME.

Acta Crystallogr F Struct Biol Commun. 2014 Nov;70(Pt 11):1472-9. doi: 10.1107/S2053230X1402130X. Epub 2014 Oct 25.


Diverse bacterial microcompartment organelles.

Chowdhury C, Sinha S, Chun S, Yeates TO, Bobik TA.

Microbiol Mol Biol Rev. 2014 Sep;78(3):438-68. doi: 10.1128/MMBR.00009-14. Review.


Alanine scanning mutagenesis identifies an asparagine-arginine-lysine triad essential to assembly of the shell of the Pdu microcompartment.

Sinha S, Cheng S, Sung YW, McNamara DE, Sawaya MR, Yeates TO, Bobik TA.

J Mol Biol. 2014 Jun 12;426(12):2328-45. doi: 10.1016/j.jmb.2014.04.012. Epub 2014 Apr 18.


Fermentative production of short-chain fatty acids in Escherichia coli.

Volker AR, Gogerty DS, Bartholomay C, Hennen-Bierwagen T, Zhu H, Bobik TA.

Microbiology. 2014 Jul;160(Pt 7):1513-1522. doi: 10.1099/mic.0.078329-0. Epub 2014 Apr 10.


Structure of dihydromethanopterin reductase, a cubic protein cage for redox transfer.

McNamara DE, Cascio D, Jorda J, Bustos C, Wang TC, Rasche ME, Yeates TO, Bobik TA.

J Biol Chem. 2014 Mar 28;289(13):8852-64. doi: 10.1074/jbc.M113.522342. Epub 2014 Feb 12.


The shells of BMC-type microcompartment organelles in bacteria.

Yeates TO, Jorda J, Bobik TA.

J Mol Microbiol Biotechnol. 2013;23(4-5):290-9. doi: 10.1159/000351347. Epub 2013 Aug 5. Review.


The PduQ enzyme is an alcohol dehydrogenase used to recycle NAD+ internally within the Pdu microcompartment of Salmonella enterica.

Cheng S, Fan C, Sinha S, Bobik TA.

PLoS One. 2012;7(10):e47144. doi: 10.1371/journal.pone.0047144. Epub 2012 Oct 15.


Interactions between the termini of lumen enzymes and shell proteins mediate enzyme encapsulation into bacterial microcompartments.

Fan C, Cheng S, Sinha S, Bobik TA.

Proc Natl Acad Sci U S A. 2012 Sep 11;109(37):14995-5000. doi: 10.1073/pnas.1207516109. Epub 2012 Aug 27.


The PduM protein is a structural component of the microcompartments involved in coenzyme B(12)-dependent 1,2-propanediol degradation by Salmonella enterica.

Sinha S, Cheng S, Fan C, Bobik TA.

J Bacteriol. 2012 Apr;194(8):1912-8. doi: 10.1128/JB.06529-11. Epub 2012 Feb 17.


Coproduction of acetaldehyde and hydrogen during glucose fermentation by Escherichia coli.

Zhu H, Gonzalez R, Bobik TA.

Appl Environ Microbiol. 2011 Sep;77(18):6441-50. doi: 10.1128/AEM.05358-11. Epub 2011 Jul 29.


The protein shells of bacterial microcompartment organelles.

Yeates TO, Thompson MC, Bobik TA.

Curr Opin Struct Biol. 2011 Apr;21(2):223-31. doi: 10.1016/ Review.


Genetic analysis of the protein shell of the microcompartments involved in coenzyme B12-dependent 1,2-propanediol degradation by Salmonella.

Cheng S, Sinha S, Fan C, Liu Y, Bobik TA.

J Bacteriol. 2011 Mar;193(6):1385-92. doi: 10.1128/JB.01473-10. Epub 2011 Jan 14.


Formation of isobutene from 3-hydroxy-3-methylbutyrate by diphosphomevalonate decarboxylase.

Gogerty DS, Bobik TA.

Appl Environ Microbiol. 2010 Dec;76(24):8004-10. doi: 10.1128/AEM.01917-10. Epub 2010 Oct 22.


Structural insight into the mechanisms of transport across the Salmonella enterica Pdu microcompartment shell.

Crowley CS, Cascio D, Sawaya MR, Kopstein JS, Bobik TA, Yeates TO.

J Biol Chem. 2010 Nov 26;285(48):37838-46. doi: 10.1074/jbc.M110.160580. Epub 2010 Sep 24.


Characterization of the PduS cobalamin reductase of Salmonella enterica and its role in the Pdu microcompartment.

Cheng S, Bobik TA.

J Bacteriol. 2010 Oct;192(19):5071-80. doi: 10.1128/JB.00575-10. Epub 2010 Jul 23.


Short N-terminal sequences package proteins into bacterial microcompartments.

Fan C, Cheng S, Liu Y, Escobar CM, Crowley CS, Jefferson RE, Yeates TO, Bobik TA.

Proc Natl Acad Sci U S A. 2010 Apr 20;107(16):7509-14. doi: 10.1073/pnas.0913199107. Epub 2010 Mar 22.


Kinetic and functional analysis of L-threonine kinase, the PduX enzyme of Salmonella enterica.

Fan C, Fromm HJ, Bobik TA.

J Biol Chem. 2009 Jul 24;284(30):20240-8. doi: 10.1074/jbc.M109.027425. Epub 2009 Jun 9.


Exploiting genomic patterns to discover new supramolecular protein assemblies.

Beeby M, Bobik TA, Yeates TO.

Protein Sci. 2009 Jan;18(1):69-79. doi: 10.1002/pro.1.


Bacterial microcompartments: their properties and paradoxes.

Cheng S, Liu Y, Crowley CS, Yeates TO, Bobik TA.

Bioessays. 2008 Nov;30(11-12):1084-95. doi: 10.1002/bies.20830. Review.


Structure of the PduU shell protein from the Pdu microcompartment of Salmonella.

Crowley CS, Sawaya MR, Bobik TA, Yeates TO.

Structure. 2008 Sep 10;16(9):1324-32. doi: 10.1016/j.str.2008.05.013.


The PduX enzyme of Salmonella enterica is an L-threonine kinase used for coenzyme B12 synthesis.

Fan C, Bobik TA.

J Biol Chem. 2008 Apr 25;283(17):11322-9. doi: 10.1074/jbc.M800287200. Epub 2008 Feb 28.


Functional characterization and mutation analysis of human ATP:Cob(I)alamin adenosyltransferase.

Fan C, Bobik TA.

Biochemistry. 2008 Mar 4;47(9):2806-13. doi: 10.1021/bi800084a. Epub 2008 Feb 6.


In vivo expression of human ATP:cob(I)alamin adenosyltransferase (ATR) using recombinant adeno-associated virus (rAAV) serotypes 2 and 8.

Erger KE, Conlon TJ, Leal NA, Zori R, Bobik TA, Flotte TR.

J Gene Med. 2007 Jun;9(6):462-9.


PduL is an evolutionarily distinct phosphotransacylase involved in B12-dependent 1,2-propanediol degradation by Salmonella enterica serovar typhimurium LT2.

Liu Y, Leal NA, Sampson EM, Johnson CL, Havemann GD, Bobik TA.

J Bacteriol. 2007 Mar;189(5):1589-96. Epub 2006 Dec 8.


Growth of Rhodospirillum rubrum on synthesis gas: conversion of CO to H2 and poly-beta-hydroxyalkanoate.

Do YS, Smeenk J, Broer KM, Kisting CJ, Brown R, Heindel TJ, Bobik TA, DiSpirito AA.

Biotechnol Bioeng. 2007 Jun 1;97(2):279-86.


Polyhedral organelles compartmenting bacterial metabolic processes.

Bobik TA.

Appl Microbiol Biotechnol. 2006 May;70(5):517-25. Epub 2006 Mar 9. Review.


Biochemical evidence that the pduS gene encodes a bifunctional cobalamin reductase.

Sampson EM, Johnson CLV, Bobik TA.

Microbiology. 2005 Apr;151(Pt 4):1169-1177. doi: 10.1099/mic.0.27755-0.


Human ATP:Cob(I)alamin adenosyltransferase and its interaction with methionine synthase reductase.

Leal NA, Olteanu H, Banerjee R, Bobik TA.

J Biol Chem. 2004 Nov 12;279(46):47536-42. Epub 2004 Aug 30.


Purification and partial characterization of the Pyrococcus horikoshii methylmalonyl-CoA epimerase.

Bobik TA, Rasche ME.

Appl Microbiol Biotechnol. 2004 Feb;63(6):682-5. Epub 2003 Oct 29.


HPLC assay for methylmalonyl-CoA epimerase.

Bobik TA, Rasche ME.

Anal Bioanal Chem. 2003 Feb;375(3):344-9. Epub 2003 Jan 16.


Identification of the human and bovine ATP:Cob(I)alamin adenosyltransferase cDNAs based on complementation of a bacterial mutant.

Leal NA, Park SD, Kima PE, Bobik TA.

J Biol Chem. 2003 Mar 14;278(11):9227-34. Epub 2003 Jan 3.

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