Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 91

1.

Identification of the master sex determining gene in Northern pike (Esox lucius) reveals restricted sex chromosome differentiation.

Pan Q, Feron R, Yano A, Guyomard R, Jouanno E, Vigouroux E, Wen M, Busnel JM, Bobe J, Concordet JP, Parrinello H, Journot L, Klopp C, Lluch J, Roques C, Postlethwait J, Schartl M, Herpin A, Guiguen Y.

PLoS Genet. 2019 Aug 22;15(8):e1008013. doi: 10.1371/journal.pgen.1008013. [Epub ahead of print]

2.

Genome editing reveals reproductive and developmental dependencies on specific types of vitellogenin in zebrafish (Danio rerio).

Yilmaz O, Patinote A, Nguyen T, Com E, Pineau C, Bobe J.

Mol Reprod Dev. 2019 Aug 5. doi: 10.1002/mrd.23231. [Epub ahead of print]

PMID:
31380595
3.

What makes a bad egg? Egg transcriptome reveals dysregulation of translational machinery and novel fertility genes important for fertilization.

Cheung CT, Nguyen TV, Le Cam A, Patinote A, Journot L, Reynes C, Bobe J.

BMC Genomics. 2019 Jul 15;20(1):584. doi: 10.1186/s12864-019-5930-8.

4.

Open Humans: A platform for participant-centered research and personal data exploration.

Greshake Tzovaras B, Angrist M, Arvai K, Dulaney M, Estrada-Galiñanes V, Gunderson B, Head T, Lewis D, Nov O, Shaer O, Tzovara A, Bobe J, Price Ball M.

Gigascience. 2019 Jun 1;8(6). pii: giz076. doi: 10.1093/gigascience/giz076.

5.

Evaluation of patient re-identification using laboratory test orders and mitigation via latent space variables.

Johnson KW, De Freitas JK, Glicksberg BS, Bobe JR, Dudley JT.

Pac Symp Biocomput. 2019;24:415-426.

6.

Maternal temperature exposure impairs emotional and cognitive responses and triggers dysregulation of neurodevelopment genes in fish.

Colson V, Cousture M, Damasceno D, Valotaire C, Nguyen T, Le Cam A, Bobe J.

PeerJ. 2019 Jan 31;7:e6338. doi: 10.7717/peerj.6338. eCollection 2019.

7.

Double maternal-effect: duplicated nucleoplasmin 2 genes, npm2a and npm2b, with essential but distinct functions are shared by fish and tetrapods.

Cheung CT, Pasquier J, Bouleau A, Nguyen T, Chesnel F, Guiguen Y, Bobe J.

BMC Evol Biol. 2018 Nov 12;18(1):167. doi: 10.1186/s12862-018-1281-3.

8.

MiR-202 controls female fecundity by regulating medaka oogenesis.

Gay S, Bugeon J, Bouchareb A, Henry L, Delahaye C, Legeai F, Montfort J, Le Cam A, Siegel A, Bobe J, Thermes V.

PLoS Genet. 2018 Sep 10;14(9):e1007593. doi: 10.1371/journal.pgen.1007593. eCollection 2018 Sep.

9.

foxr1 is a novel maternal-effect gene in fish that is required for early embryonic success.

Cheung CT, Patinote A, Guiguen Y, Bobe J.

PeerJ. 2018 Aug 23;6:e5534. doi: 10.7717/peerj.5534. eCollection 2018.

10.

Genes Involved in Drosophila melanogaster Ovarian Function Are Highly Conserved Throughout Evolution.

Elis S, Desmarchais A, Cardona E, Fouchecourt S, Dalbies-Tran R, Nguyen T, Thermes V, Maillard V, Papillier P, Uzbekova S, Bobe J, Couderc JL, Monget P.

Genome Biol Evol. 2018 Oct 1;10(10):2629-2642. doi: 10.1093/gbe/evy158.

11.

Reply to: 'Subfunctionalization versus neofunctionalization after whole-genome duplication'.

Braasch I, Bobe J, Guiguen Y, Postlethwait JH.

Nat Genet. 2018 Jul;50(7):910-911. doi: 10.1038/s41588-018-0163-3. No abstract available.

PMID:
29955179
12.

CMA restricted to mammals and birds: myth or reality?

Lescat L, Herpin A, Mourot B, Véron V, Guiguen Y, Bobe J, Seiliez I.

Autophagy. 2018;14(7):1267-1270. doi: 10.1080/15548627.2018.1460021. Epub 2018 Jul 20.

13.
14.

Multiple vitellogenins in zebrafish (Danio rerio): quantitative inventory of genes, transcripts and proteins, and relation to egg quality.

Yilmaz O, Patinote A, Nguyen T, Bobe J.

Fish Physiol Biochem. 2018 Dec;44(6):1509-1525. doi: 10.1007/s10695-018-0524-y. Epub 2018 Jun 7.

PMID:
29882000
15.

'Your DNA, Your Say': global survey gathering attitudes toward genomics: design, delivery and methods.

Middleton A, Niemiec E, Prainsack B, Bobe J, Farley L, Steed C, Smith J, Bevan P, Bonhomme N, Kleiderman E, Thorogood A, Schickhardt C, Garattini C, Vears D, Littler K, Banner N, Scott E, Kovalevskaya NV, Levin E, Morley KI, Howard HC.

Per Med. 2018 Jul 1;15(4):311-318. doi: 10.2217/pme-2018-0032. Epub 2018 Jun 1.

16.

APPLaUD: access for patients and participants to individual level uninterpreted genomic data.

Thorogood A, Bobe J, Prainsack B, Middleton A, Scott E, Nelson S, Corpas M, Bonhomme N, Rodriguez LL, Murtagh M, Kleiderman E; Participant Values Task Team of the Global Alliance for Genomics and Health.

Hum Genomics. 2018 Feb 17;12(1):7. doi: 10.1186/s40246-018-0139-5. Review.

17.

Scrambled eggs: Proteomic portraits and novel biomarkers of egg quality in zebrafish (Danio rerio).

Yilmaz O, Patinote A, Nguyen TV, Com E, Lavigne R, Pineau C, Sullivan CV, Bobe J.

PLoS One. 2017 Nov 16;12(11):e0188084. doi: 10.1371/journal.pone.0188084. eCollection 2017.

18.

Evolution of gene expression after whole-genome duplication: New insights from the spotted gar genome.

Pasquier J, Braasch I, Batzel P, Cabau C, Montfort J, Nguyen T, Jouanno E, Berthelot C, Klopp C, Journot L, Postlethwait JH, Guiguen Y, Bobe J.

J Exp Zool B Mol Dev Evol. 2017 Nov;328(7):709-721. doi: 10.1002/jez.b.22770. Epub 2017 Sep 25.

19.

The advantage of channeling nucleotides for very processive functions.

Zala D, Schlattner U, Desvignes T, Bobe J, Roux A, Chavrier P, Boissan M.

Version 2. F1000Res. 2017 May 18 [revised 2017 Jan 1];6:724. doi: 10.12688/f1000research.11561.2. eCollection 2017. Review.

20.

Matching phenotypes to whole genomes: Lessons learned from four iterations of the personal genome project community challenges.

Cai B, Li B, Kiga N, Thusberg J, Bergquist T, Chen YC, Niknafs N, Carter H, Tokheim C, Beleva-Guthrie V, Douville C, Bhattacharya R, Yeo HTG, Fan J, Sengupta S, Kim D, Cline M, Turner T, Diekhans M, Zaucha J, Pal LR, Cao C, Yu CH, Yin Y, Carraro M, Giollo M, Ferrari C, Leonardi E, Tosatto SCE, Bobe J, Ball M, Hoskins RA, Repo S, Church G, Brenner SE, Moult J, Gough J, Stanke M, Karchin R, Mooney SD.

Hum Mutat. 2017 Sep;38(9):1266-1276. doi: 10.1002/humu.23265. Epub 2017 Jun 19.

21.

Evolutionary history of glucose-6-phosphatase encoding genes in vertebrate lineages: towards a better understanding of the functions of multiple duplicates.

Marandel L, Panserat S, Plagnes-Juan E, Arbenoits E, Soengas JL, Bobe J.

BMC Genomics. 2017 May 2;18(1):342. doi: 10.1186/s12864-017-3727-1.

22.

Compacting and correcting Trinity and Oases RNA-Seq de novo assemblies.

Cabau C, Escudié F, Djari A, Guiguen Y, Bobe J, Klopp C.

PeerJ. 2017 Feb 16;5:e2988. doi: 10.7717/peerj.2988. eCollection 2017.

23.

Transcriptomic Profiling of Egg Quality in Sea Bass (Dicentrarchus labrax) Sheds Light on Genes Involved in Ubiquitination and Translation.

Żarski D, Nguyen T, Le Cam A, Montfort J, Dutto G, Vidal MO, Fauvel C, Bobe J.

Mar Biotechnol (NY). 2017 Feb;19(1):102-115. doi: 10.1007/s10126-017-9732-1. Epub 2017 Feb 8.

24.

Genome-wide identification of novel ovarian-predominant miRNAs: new insights from the medaka (Oryzias latipes).

Bouchareb A, Le Cam A, Montfort J, Gay S, Nguyen T, Bobe J, Thermes V.

Sci Rep. 2017 Jan 10;7:40241. doi: 10.1038/srep40241.

25.

Identification and characterization of a catechol-o-methyltransferase cDNA in the catfish Heteropneustes fossilis: Tissue, sex and seasonal variations, and effects of gonadotropin and 2-hydroxyestradiol-17β on mRNA expression.

Chaube R, Rawat A, Inbaraj RM, Bobe J, Guiguen Y, Fostier A, Joy KP.

Gen Comp Endocrinol. 2017 May 15;246:129-141. doi: 10.1016/j.ygcen.2016.12.001. Epub 2016 Dec 8.

PMID:
27939670
26.

Sexually dimorphic gene expressions in eels: useful markers for early sex assessment in a conservation context.

Geffroy B, Guilbaud F, Amilhat E, Beaulaton L, Vignon M, Huchet E, Rives J, Bobe J, Fostier A, Guiguen Y, Bardonnet A.

Sci Rep. 2016 Sep 23;6:34041. doi: 10.1038/srep34041.

27.

Foxl2 and Its Relatives Are Evolutionary Conserved Players in Gonadal Sex Differentiation.

Bertho S, Pasquier J, Pan Q, Le Trionnaire G, Bobe J, Postlethwait JH, Pailhoux E, Schartl M, Herpin A, Guiguen Y.

Sex Dev. 2016;10(3):111-29. doi: 10.1159/000447611. Epub 2016 Jul 22. Review.

28.

Extensive sequencing of seven human genomes to characterize benchmark reference materials.

Zook JM, Catoe D, McDaniel J, Vang L, Spies N, Sidow A, Weng Z, Liu Y, Mason CE, Alexander N, Henaff E, McIntyre AB, Chandramohan D, Chen F, Jaeger E, Moshrefi A, Pham K, Stedman W, Liang T, Saghbini M, Dzakula Z, Hastie A, Cao H, Deikus G, Schadt E, Sebra R, Bashir A, Truty RM, Chang CC, Gulbahce N, Zhao K, Ghosh S, Hyland F, Fu Y, Chaisson M, Xiao C, Trow J, Sherry ST, Zaranek AW, Ball M, Bobe J, Estep P, Church GM, Marks P, Kyriazopoulou-Panagiotopoulou S, Zheng GX, Schnall-Levin M, Ordonez HS, Mudivarti PA, Giorda K, Sheng Y, Rypdal KB, Salit M.

Sci Data. 2016 Jun 7;3:160025. doi: 10.1038/sdata.2016.25.

29.

Corrigendum: The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons.

Braasch I, Gehrke AR, Smith JJ, Kawasaki K, Manousaki T, Pasquier J, Amores A, Desvignes T, Batzel P, Catchen J, Berlin AM, Campbell MS, Barrell D, Martin KJ, Mulley JF, Ravi V, Lee AP, Nakamura T, Chalopin D, Fan S, Wcisel D, Cañestro C, Sydes J, Beaudry FE, Sun Y, Hertel J, Beam MJ, Fasold M, Ishiyama M, Johnson J, Kehr S, Lara M, Letaw JH, Litman GW, Litman RT, Mikami M, Ota T, Saha NR, Williams L, Stadler PF, Wang H, Taylor JS, Fontenot Q, Ferrara A, Searle SM, Aken B, Yandell M, Schneider I, Yoder JA, Volff JN, Meyer A, Amemiya CT, Venkatesh B, Holland PW, Guiguen Y, Bobe J, Shubin NH, Di Palma F, Alfo Ldi J, Lindblad-Toh K, Postlethwait JH.

Nat Genet. 2016 May 27;48(6):700. doi: 10.1038/ng0616-700c. No abstract available.

PMID:
27230688
30.

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.

Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J.

BMC Genomics. 2016 May 18;17:368. doi: 10.1186/s12864-016-2709-z.

31.

Analysis of 589,306 genomes identifies individuals resilient to severe Mendelian childhood diseases.

Chen R, Shi L, Hakenberg J, Naughton B, Sklar P, Zhang J, Zhou H, Tian L, Prakash O, Lemire M, Sleiman P, Cheng WY, Chen W, Shah H, Shen Y, Fromer M, Omberg L, Deardorff MA, Zackai E, Bobe JR, Levin E, Hudson TJ, Groop L, Wang J, Hakonarson H, Wojcicki A, Diaz GA, Edelmann L, Schadt EE, Friend SH.

Nat Biotechnol. 2016 May;34(5):531-8. doi: 10.1038/nbt.3514. Epub 2016 Apr 11.

PMID:
27065010
32.

The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons.

Braasch I, Gehrke AR, Smith JJ, Kawasaki K, Manousaki T, Pasquier J, Amores A, Desvignes T, Batzel P, Catchen J, Berlin AM, Campbell MS, Barrell D, Martin KJ, Mulley JF, Ravi V, Lee AP, Nakamura T, Chalopin D, Fan S, Wcisel D, Cañestro C, Sydes J, Beaudry FE, Sun Y, Hertel J, Beam MJ, Fasold M, Ishiyama M, Johnson J, Kehr S, Lara M, Letaw JH, Litman GW, Litman RT, Mikami M, Ota T, Saha NR, Williams L, Stadler PF, Wang H, Taylor JS, Fontenot Q, Ferrara A, Searle SM, Aken B, Yandell M, Schneider I, Yoder JA, Volff JN, Meyer A, Amemiya CT, Venkatesh B, Holland PW, Guiguen Y, Bobe J, Shubin NH, Di Palma F, Alföldi J, Lindblad-Toh K, Postlethwait JH.

Nat Genet. 2016 Apr;48(4):427-37. doi: 10.1038/ng.3526. Epub 2016 Mar 7.

33.

Characterization of an extensive rainbow trout miRNA transcriptome by next generation sequencing.

Juanchich A, Bardou P, Rué O, Gabillard JC, Gaspin C, Bobe J, Guiguen Y.

BMC Genomics. 2016 Mar 1;17:164. doi: 10.1186/s12864-016-2505-9.

34.

X-Linked Retinitis Pigmentosa 2 Is a Novel Maternal-Effect Gene Required for Left-Right Asymmetry in Zebrafish.

Desvignes T, Nguyen T, Chesnel F, Bouleau A, Fauvel C, Bobe J.

Biol Reprod. 2015 Aug;93(2):42. doi: 10.1095/biolreprod.115.130575. Epub 2015 Jul 1.

PMID:
26134862
35.

Transfection of isolated rainbow trout, Oncorhynchus mykiss, granulosa cells through chemical transfection and electroporation at 12°C.

Marivin E, Mourot B, Loyer P, Rime H, Bobe J, Fostier A.

Gen Comp Endocrinol. 2015 Sep 15;221:165-72. doi: 10.1016/j.ygcen.2015.03.012. Epub 2015 May 6.

PMID:
25957917
36.

Effects of the anti-androgen cyproterone acetate (CPA) on oocyte meiotic maturation in rainbow trout (Oncorhynchus mykiss).

Rime H, Nguyen T, Ombredane K, Fostier A, Bobe J.

Aquat Toxicol. 2015 Jul;164:34-42. doi: 10.1016/j.aquatox.2015.04.009. Epub 2015 Apr 9.

PMID:
25911576
37.

A comparison between egg trancriptomes of cod and salmon reveals species-specific traits in eggs for each species.

Wargelius A, Furmanek T, Montfort J, Le Cam A, Kleppe L, Juanchich A, Edvardsen RB, Taranger GL, Bobe J.

Mol Reprod Dev. 2015 May;82(5):397-404. doi: 10.1002/mrd.22487. Epub 2015 Apr 23.

PMID:
25908546
38.

Inhibition of zygotic DNA repair: transcriptome analysis of the offspring in trout (Oncorhynchus mykiss).

Fernández-Díez C, González-Rojo S, Montfort J, Le Cam A, Bobe J, Robles V, Pérez-Cerezales S, Herráez MP.

Reproduction. 2015 Jan;149(1):101-11. doi: 10.1530/REP-14-0382.

PMID:
25433028
39.

Maternally inherited npm2 mRNA is crucial for egg developmental competence in zebrafish.

Bouleau A, Desvignes T, Traverso JM, Nguyen T, Chesnel F, Fauvel C, Bobe J.

Biol Reprod. 2014 Aug;91(2):43. doi: 10.1095/biolreprod.114.119925. Epub 2014 Jul 9.

PMID:
25009208
40.

Sex hormone-binding globulins characterization and gonadal gene expression during sex differentiation in the rainbow trout, Oncorhynchus mykiss.

Marivin E, Yano A, Guérin A, Nguyen TV, Fostier A, Bobe J, Guiguen Y.

Mol Reprod Dev. 2014 Aug;81(8):757-65. doi: 10.1002/mrd.22344. Epub 2014 Jun 16.

PMID:
24889418
41.

The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates.

Berthelot C, Brunet F, Chalopin D, Juanchich A, Bernard M, Noël B, Bento P, Da Silva C, Labadie K, Alberti A, Aury JM, Louis A, Dehais P, Bardou P, Montfort J, Klopp C, Cabau C, Gaspin C, Thorgaard GH, Boussaha M, Quillet E, Guyomard R, Galiana D, Bobe J, Volff JN, Genêt C, Wincker P, Jaillon O, Roest Crollius H, Guiguen Y.

Nat Commun. 2014 Apr 22;5:3657. doi: 10.1038/ncomms4657.

42.

Harvard Personal Genome Project: lessons from participatory public research.

Ball MP, Bobe JR, Chou MF, Clegg T, Estep PW, Lunshof JE, Vandewege W, Zaranek A, Church GM.

Genome Med. 2014 Feb 28;6(2):10. doi: 10.1186/gm527.

43.

The founding charter of the Genomic Observatories Network.

Davies N, Field D, Amaral-Zettler L, Clark MS, Deck J, Drummond A, Faith DP, Geller J, Gilbert J, Glöckner FO, Hirsch PR, Leong JA, Meyer C, Obst M, Planes S, Scholin C, Vogler AP, Gates RD, Toonen R, Berteaux-Lecellier V, Barbier M, Barker K, Bertilsson S, Bicak M, Bietz MJ, Bobe J, Bodrossy L, Borja A, Coddington J, Fuhrman J, Gerdts G, Gillespie R, Goodwin K, Hanson PC, Hero JM, Hoekman D, Jansson J, Jeanthon C, Kao R, Klindworth A, Knight R, Kottmann R, Koo MS, Kotoulas G, Lowe AJ, Marteinsson VT, Meyer F, Morrison N, Myrold DD, Pafilis E, Parker S, Parnell JJ, Polymenakou PN, Ratnasingham S, Roderick GK, Rodriguez-Ezpeleta N, Schonrogge K, Simon N, Valette-Silver NJ, Springer YP, Stone GN, Stones-Havas S, Sansone SA, Thibault KM, Wecker P, Wichels A, Wooley JC, Yahara T, Zingone A; GOs-COS.

Gigascience. 2014 Mar 7;3(1):2. doi: 10.1186/2047-217X-3-2.

44.

Connectivity of vertebrate genomes: Paired-related homeobox (Prrx) genes in spotted gar, basal teleosts, and tetrapods.

Braasch I, Guiguen Y, Loker R, Letaw JH, Ferrara A, Bobe J, Postlethwait JH.

Comp Biochem Physiol C Toxicol Pharmacol. 2014 Jun;163:24-36. doi: 10.1016/j.cbpc.2014.01.005. Epub 2014 Jan 30.

45.

Identification of differentially expressed miRNAs and their potential targets during fish ovarian development.

Juanchich A, Le Cam A, Montfort J, Guiguen Y, Bobe J.

Biol Reprod. 2013 May 23;88(5):128. doi: 10.1095/biolreprod.112.105361. Print 2013 May.

PMID:
23595902
46.

Do not put all teleosts in one net: focus on the sox2 and pou2 genes.

Marandel L, Labbe C, Bobe J, Jammes H, Lareyre JJ, Le Bail PY.

Comp Biochem Physiol B Biochem Mol Biol. 2013 Feb;164(2):69-79. doi: 10.1016/j.cbpb.2012.10.005. Epub 2012 Nov 8.

PMID:
23142214
47.

Oocyte-somatic cells interactions, lessons from evolution.

Charlier C, Montfort J, Chabrol O, Brisard D, Nguyen T, Le Cam A, Richard-Parpaillon L, Moreews F, Pontarotti P, Uzbekova S, Chesnel F, Bobe J.

BMC Genomics. 2012 Oct 19;13:560. doi: 10.1186/1471-2164-13-560.

48.

A public resource facilitating clinical use of genomes.

Ball MP, Thakuria JV, Zaranek AW, Clegg T, Rosenbaum AM, Wu X, Angrist M, Bhak J, Bobe J, Callow MJ, Cano C, Chou MF, Chung WK, Douglas SM, Estep PW, Gore A, Hulick P, Labarga A, Lee JH, Lunshof JE, Kim BC, Kim JI, Li Z, Murray MF, Nilsen GB, Peters BA, Raman AM, Rienhoff HY, Robasky K, Wheeler MT, Vandewege W, Vorhaus DB, Yang JL, Yang L, Aach J, Ashley EA, Drmanac R, Kim SJ, Li JB, Peshkin L, Seidman CE, Seo JS, Zhang K, Rehm HL, Church GM.

Proc Natl Acad Sci U S A. 2012 Jul 24;109(30):11920-7. doi: 10.1073/pnas.1201904109. Epub 2012 Jul 13.

49.

The Nme gene family in fish.

Desvignes T, Fostier A, Fauvel C, Bobe J.

Fish Physiol Biochem. 2013 Feb;39(1):53-8. doi: 10.1007/s10695-012-9639-8. Epub 2012 Apr 8. Review.

PMID:
22484598
50.

Characterization of rainbow trout gonad, brain and gill deep cDNA repertoires using a Roche 454-Titanium sequencing approach.

Le Cam A, Bobe J, Bouchez O, Cabau C, Kah O, Klopp C, Lareyre JJ, Le Guen I, Lluch J, Montfort J, Moreews F, Nicol B, Prunet P, Rescan PY, Servili A, Guiguen Y.

Gene. 2012 May 25;500(1):32-9. doi: 10.1016/j.gene.2012.03.053. Epub 2012 Mar 30.

PMID:
22465513

Supplemental Content

Support Center