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Items: 16

1.

Toward understanding cancer stem cell heterogeneity in the tumor microenvironment.

Bocci F, Gearhart-Serna L, Boareto M, Ribeiro M, Ben-Jacob E, Devi GR, Levine H, Onuchic JN, Jolly MK.

Proc Natl Acad Sci U S A. 2019 Jan 2;116(1):148-157. doi: 10.1073/pnas.1815345116. Epub 2018 Dec 26.

PMID:
30587589
2.

Differential Expression Analysis in RNA-seq Data Using a Geometric Approach.

Tambonis T, Boareto M, Leite VBP.

J Comput Biol. 2018 Nov;25(11):1257-1265. doi: 10.1089/cmb.2017.0244. Epub 2018 Aug 22.

PMID:
30133310
3.

Travelling waves in somitogenesis: Collective cellular properties emerge from time-delayed juxtacrine oscillation coupling.

Tomka T, Iber D, Boareto M.

Prog Biophys Mol Biol. 2018 Sep;137:76-87. doi: 10.1016/j.pbiomolbio.2018.04.004. Epub 2018 Apr 24. Review.

PMID:
29702125
4.

Mechanosensitivity of Jagged-Notch signaling can induce a switch-type behavior in vascular homeostasis.

Loerakker S, Stassen OMJA, Ter Huurne FM, Boareto M, Bouten CVC, Sahlgren CM.

Proc Natl Acad Sci U S A. 2018 Apr 17;115(16):E3682-E3691. doi: 10.1073/pnas.1715277115. Epub 2018 Apr 2.

5.

Differential interactions between Notch and ID factors control neurogenesis by modulating Hes factor autoregulation.

Boareto M, Iber D, Taylor V.

Development. 2017 Oct 1;144(19):3465-3474. doi: 10.1242/dev.152520.

6.

Inflammatory breast cancer: a model for investigating cluster-based dissemination.

Jolly MK, Boareto M, Debeb BG, Aceto N, Farach-Carson MC, Woodward WA, Levine H.

NPJ Breast Cancer. 2017 Jun 6;3:21. doi: 10.1038/s41523-017-0023-9. eCollection 2017.

7.

Operating principles of tristable circuits regulating cellular differentiation.

Jia D, Jolly MK, Harrison W, Boareto M, Ben-Jacob E, Levine H.

Phys Biol. 2017 May 23;14(3):035007. doi: 10.1088/1478-3975/aa6f90.

PMID:
28443829
8.

Notch-Jagged signalling can give rise to clusters of cells exhibiting a hybrid epithelial/mesenchymal phenotype.

Boareto M, Jolly MK, Goldman A, Pietilä M, Mani SA, Sengupta S, Ben-Jacob E, Levine H, Onuchic JN.

J R Soc Interface. 2016 May;13(118). pii: 20151106. doi: 10.1098/rsif.2015.1106.

9.

Supervised Variational Relevance Learning, An Analytic Geometric Feature Selection with Applications to Omic Datasets.

Boareto M, Cesar J, Leite VB, Caticha N.

IEEE/ACM Trans Comput Biol Bioinform. 2015 May-Jun;12(3):705-11. doi: 10.1109/TCBB.2014.2377750.

PMID:
26357281
10.

Coupling the modules of EMT and stemness: A tunable 'stemness window' model.

Jolly MK, Jia D, Boareto M, Mani SA, Pienta KJ, Ben-Jacob E, Levine H.

Oncotarget. 2015 Sep 22;6(28):25161-74. doi: 10.18632/oncotarget.4629.

11.

Implications of the Hybrid Epithelial/Mesenchymal Phenotype in Metastasis.

Jolly MK, Boareto M, Huang B, Jia D, Lu M, Ben-Jacob E, Onuchic JN, Levine H.

Front Oncol. 2015 Jul 20;5:155. doi: 10.3389/fonc.2015.00155. eCollection 2015. Review.

12.

Jagged mediates differences in normal and tumor angiogenesis by affecting tip-stalk fate decision.

Boareto M, Jolly MK, Ben-Jacob E, Onuchic JN.

Proc Natl Acad Sci U S A. 2015 Jul 21;112(29):E3836-44. doi: 10.1073/pnas.1511814112. Epub 2015 Jul 7.

13.

OVOL guides the epithelial-hybrid-mesenchymal transition.

Jia D, Jolly MK, Boareto M, Parsana P, Mooney SM, Pienta KJ, Levine H, Ben-Jacob E.

Oncotarget. 2015 Jun 20;6(17):15436-48.

14.

Jagged-Delta asymmetry in Notch signaling can give rise to a Sender/Receiver hybrid phenotype.

Boareto M, Jolly MK, Lu M, Onuchic JN, Clementi C, Ben-Jacob E.

Proc Natl Acad Sci U S A. 2015 Feb 3;112(5):E402-9. doi: 10.1073/pnas.1416287112. Epub 2015 Jan 20.

15.

t-Test at the Probe Level: An Alternative Method to Identify Statistically Significant Genes for Microarray Data.

Boareto M, Caticha N.

Microarrays (Basel). 2014 Dec 16;3(4):340-51. doi: 10.3390/microarrays3040340.

16.

Relationship between global structural parameters and Enzyme Commission hierarchy: implications for function prediction.

Boareto M, Yamagishi ME, Caticha N, Leite VB.

Comput Biol Chem. 2012 Oct;40:15-9. doi: 10.1016/j.compbiolchem.2012.06.003. Epub 2012 Aug 14.

PMID:
22926016

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