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Items: 18

1.

Id4 Downstream of Notch2 Maintains Neural Stem Cell Quiescence in the Adult Hippocampus.

Zhang R, Boareto M, Engler A, Louvi A, Giachino C, Iber D, Taylor V.

Cell Rep. 2019 Aug 6;28(6):1485-1498.e6. doi: 10.1016/j.celrep.2019.07.014.

2.

A stochastic model of adult neurogenesis coupling cell cycle progression and differentiation.

Stopka A, Boareto M.

J Theor Biol. 2019 Aug 21;475:60-72. doi: 10.1016/j.jtbi.2019.05.014. Epub 2019 May 22.

PMID:
31128140
3.

Toward understanding cancer stem cell heterogeneity in the tumor microenvironment.

Bocci F, Gearhart-Serna L, Boareto M, Ribeiro M, Ben-Jacob E, Devi GR, Levine H, Onuchic JN, Jolly MK.

Proc Natl Acad Sci U S A. 2019 Jan 2;116(1):148-157. doi: 10.1073/pnas.1815345116. Epub 2018 Dec 26.

4.

Differential Expression Analysis in RNA-seq Data Using a Geometric Approach.

Tambonis T, Boareto M, Leite VBP.

J Comput Biol. 2018 Nov;25(11):1257-1265. doi: 10.1089/cmb.2017.0244. Epub 2018 Aug 22.

PMID:
30133310
5.

Travelling waves in somitogenesis: Collective cellular properties emerge from time-delayed juxtacrine oscillation coupling.

Tomka T, Iber D, Boareto M.

Prog Biophys Mol Biol. 2018 Sep;137:76-87. doi: 10.1016/j.pbiomolbio.2018.04.004. Epub 2018 Apr 24. Review.

PMID:
29702125
6.

Mechanosensitivity of Jagged-Notch signaling can induce a switch-type behavior in vascular homeostasis.

Loerakker S, Stassen OMJA, Ter Huurne FM, Boareto M, Bouten CVC, Sahlgren CM.

Proc Natl Acad Sci U S A. 2018 Apr 17;115(16):E3682-E3691. doi: 10.1073/pnas.1715277115. Epub 2018 Apr 2.

7.

Differential interactions between Notch and ID factors control neurogenesis by modulating Hes factor autoregulation.

Boareto M, Iber D, Taylor V.

Development. 2017 Oct 1;144(19):3465-3474. doi: 10.1242/dev.152520.

8.

Inflammatory breast cancer: a model for investigating cluster-based dissemination.

Jolly MK, Boareto M, Debeb BG, Aceto N, Farach-Carson MC, Woodward WA, Levine H.

NPJ Breast Cancer. 2017 Jun 6;3:21. doi: 10.1038/s41523-017-0023-9. eCollection 2017.

9.

Operating principles of tristable circuits regulating cellular differentiation.

Jia D, Jolly MK, Harrison W, Boareto M, Ben-Jacob E, Levine H.

Phys Biol. 2017 May 23;14(3):035007. doi: 10.1088/1478-3975/aa6f90.

PMID:
28443829
10.

Notch-Jagged signalling can give rise to clusters of cells exhibiting a hybrid epithelial/mesenchymal phenotype.

Boareto M, Jolly MK, Goldman A, Pietilä M, Mani SA, Sengupta S, Ben-Jacob E, Levine H, Onuchic JN.

J R Soc Interface. 2016 May;13(118). pii: 20151106. doi: 10.1098/rsif.2015.1106.

11.

Supervised Variational Relevance Learning, An Analytic Geometric Feature Selection with Applications to Omic Datasets.

Boareto M, Cesar J, Leite VB, Caticha N.

IEEE/ACM Trans Comput Biol Bioinform. 2015 May-Jun;12(3):705-11. doi: 10.1109/TCBB.2014.2377750.

PMID:
26357281
12.

Coupling the modules of EMT and stemness: A tunable 'stemness window' model.

Jolly MK, Jia D, Boareto M, Mani SA, Pienta KJ, Ben-Jacob E, Levine H.

Oncotarget. 2015 Sep 22;6(28):25161-74. doi: 10.18632/oncotarget.4629.

13.

Implications of the Hybrid Epithelial/Mesenchymal Phenotype in Metastasis.

Jolly MK, Boareto M, Huang B, Jia D, Lu M, Ben-Jacob E, Onuchic JN, Levine H.

Front Oncol. 2015 Jul 20;5:155. doi: 10.3389/fonc.2015.00155. eCollection 2015. Review.

14.

Jagged mediates differences in normal and tumor angiogenesis by affecting tip-stalk fate decision.

Boareto M, Jolly MK, Ben-Jacob E, Onuchic JN.

Proc Natl Acad Sci U S A. 2015 Jul 21;112(29):E3836-44. doi: 10.1073/pnas.1511814112. Epub 2015 Jul 7.

15.

OVOL guides the epithelial-hybrid-mesenchymal transition.

Jia D, Jolly MK, Boareto M, Parsana P, Mooney SM, Pienta KJ, Levine H, Ben-Jacob E.

Oncotarget. 2015 Jun 20;6(17):15436-48.

16.

Jagged-Delta asymmetry in Notch signaling can give rise to a Sender/Receiver hybrid phenotype.

Boareto M, Jolly MK, Lu M, Onuchic JN, Clementi C, Ben-Jacob E.

Proc Natl Acad Sci U S A. 2015 Feb 3;112(5):E402-9. doi: 10.1073/pnas.1416287112. Epub 2015 Jan 20.

17.

t-Test at the Probe Level: An Alternative Method to Identify Statistically Significant Genes for Microarray Data.

Boareto M, Caticha N.

Microarrays (Basel). 2014 Dec 16;3(4):340-51. doi: 10.3390/microarrays3040340.

18.

Relationship between global structural parameters and Enzyme Commission hierarchy: implications for function prediction.

Boareto M, Yamagishi ME, Caticha N, Leite VB.

Comput Biol Chem. 2012 Oct;40:15-9. doi: 10.1016/j.compbiolchem.2012.06.003. Epub 2012 Aug 14.

PMID:
22926016

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