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Items: 49

1.

Unraveling the cellular heterogeneity of malignant pleural mesothelioma through a deconvolution approach.

Blum Y, Jaurand MC, De Reyniès A, Jean D.

Mol Cell Oncol. 2019 May 7;6(4):1610322. doi: 10.1080/23723556.2019.1610322. eCollection 2019.

PMID:
31211240
2.

Dissecting heterogeneity in malignant pleural mesothelioma through histo-molecular gradients for clinical applications.

Blum Y, Meiller C, Quetel L, Elarouci N, Ayadi M, Tashtanbaeva D, Armenoult L, Montagne F, Tranchant R, Renier A, de Koning L, Copin MC, Hofman P, Hofman V, Porte H, Le Pimpec-Barthes F, Zucman-Rossi J, Jaurand MC, de Reyniès A, Jean D.

Nat Commun. 2019 Mar 22;10(1):1333. doi: 10.1038/s41467-019-09307-6.

3.

Prognostic Biomarkers in Pancreatic Cancer: Avoiding Errata When Using the TCGA Dataset.

Nicolle R, Raffenne J, Paradis V, Couvelard A, de Reynies A, Blum Y, Cros J.

Cancers (Basel). 2019 Jan 21;11(1). pii: E126. doi: 10.3390/cancers11010126.

4.

Stratification of Pancreatic Ductal Adenocarcinomas Based on Tumor and Microenvironment Features.

Puleo F, Nicolle R, Blum Y, Cros J, Marisa L, Demetter P, Quertinmont E, Svrcek M, Elarouci N, Iovanna J, Franchimont D, Verset L, Galdon MG, Devière J, de Reyniès A, Laurent-Puig P, Van Laethem JL, Bachet JB, Maréchal R.

Gastroenterology. 2018 Dec;155(6):1999-2013.e3. doi: 10.1053/j.gastro.2018.08.033. Epub 2018 Aug 27.

PMID:
30165049
5.

[Multi-omic approaches reveal new therapeutic targets for the treatment of pancreatic cancer].

Nicolle R, Blum Y, Marisa L, Dusetti N, Iovanna J.

Med Sci (Paris). 2018 May;34(5):379-382. doi: 10.1051/medsci/20183405003. Epub 2018 Jun 13. French. No abstract available.

6.

Distinct epigenetic landscapes underlie the pathobiology of pancreatic cancer subtypes.

Lomberk G, Blum Y, Nicolle R, Nair A, Gaonkar KS, Marisa L, Mathison A, Sun Z, Yan H, Elarouci N, Armenoult L, Ayadi M, Ordog T, Lee JH, Oliver G, Klee E, Moutardier V, Gayet O, Bian B, Duconseil P, Gilabert M, Bigonnet M, Garcia S, Turrini O, Delpero JR, Giovannini M, Grandval P, Gasmi M, Secq V, De Reyniès A, Dusetti N, Iovanna J, Urrutia R.

Nat Commun. 2018 May 17;9(1):1978. doi: 10.1038/s41467-018-04383-6.

7.

Multi-tissue transcriptomic study reveals the main role of liver in the chicken adaptive response to a switch in dietary energy source through the transcriptional regulation of lipogenesis.

Desert C, Baéza E, Aite M, Boutin M, Le Cam A, Montfort J, Houee-Bigot M, Blum Y, Roux PF, Hennequet-Antier C, Berri C, Metayer-Coustard S, Collin A, Allais S, Le Bihan E, Causeur D, Gondret F, Duclos MJ, Lagarrigue S.

BMC Genomics. 2018 Mar 7;19(1):187. doi: 10.1186/s12864-018-4520-5.

8.

Microfluidic platform for single cell analysis under dynamic spatial and temporal stimulation.

Song J, Ryu H, Chung M, Kim Y, Blum Y, Lee SS, Pertz O, Jeon NL.

Biosens Bioelectron. 2018 May 1;104:58-64. doi: 10.1016/j.bios.2017.12.038. Epub 2017 Dec 27.

PMID:
29306762
9.

Pancreatic Adenocarcinoma Therapeutic Targets Revealed by Tumor-Stroma Cross-Talk Analyses in Patient-Derived Xenografts.

Nicolle R, Blum Y, Marisa L, Loncle C, Gayet O, Moutardier V, Turrini O, Giovannini M, Bian B, Bigonnet M, Rubis M, Elarouci N, Armenoult L, Ayadi M, Duconseil P, Gasmi M, Ouaissi M, Maignan A, Lomberk G, Boher JM, Ewald J, Bories E, Garnier J, Goncalves A, Poizat F, Raoul JL, Secq V, Garcia S, Grandval P, Barraud-Blanc M, Norguet E, Gilabert M, Delpero JR, Roques J, Calvo E, Guillaumond F, Vasseur S, Urrutia R, de Reyniès A, Dusetti N, Iovanna J.

Cell Rep. 2017 Nov 28;21(9):2458-2470. doi: 10.1016/j.celrep.2017.11.003.

10.

Relationships between gut microbiota, plasma metabolites, and metabolic syndrome traits in the METSIM cohort.

Org E, Blum Y, Kasela S, Mehrabian M, Kuusisto J, Kangas AJ, Soininen P, Wang Z, Ala-Korpela M, Hazen SL, Laakso M, Lusis AJ.

Genome Biol. 2017 Apr 13;18(1):70. doi: 10.1186/s13059-017-1194-2.

11.

Gene expression profiling of patient-derived pancreatic cancer xenografts predicts sensitivity to the BET bromodomain inhibitor JQ1: implications for individualized medicine efforts.

Bian B, Bigonnet M, Gayet O, Loncle C, Maignan A, Gilabert M, Moutardier V, Garcia S, Turrini O, Delpero JR, Giovannini M, Grandval P, Gasmi M, Ouaissi M, Secq V, Poizat F, Nicolle R, Blum Y, Marisa L, Rubis M, Raoul JL, Bradner JE, Qi J, Lomberk G, Urrutia R, Saul A, Dusetti N, Iovanna J.

EMBO Mol Med. 2017 Apr;9(4):482-497. doi: 10.15252/emmm.201606975.

12.

Measuring ERK Activity Dynamics in Single Living Cells Using FRET Biosensors.

Blum Y, Fritz RD, Ryu H, Pertz O.

Methods Mol Biol. 2017;1487:203-221.

PMID:
27924569
13.

Role of lipid phosphate phosphatase 3 in human aortic endothelial cell function.

Touat-Hamici Z, Weidmann H, Blum Y, Proust C, Durand H, Iannacci F, Codoni V, Gaignard P, Thérond P, Civelek M, Karabina SA, Lusis AJ, Cambien F, Ninio E.

Cardiovasc Res. 2016 Dec;112(3):702-713. Epub 2016 Sep 30.

14.

Nonsurgical Treatment of Aseptic Periprosthetic Gout Flare of the Knee: A Report of 2 Cases.

Chen F, Glezos C, Blum Y, Hossack M, Schwechter EM.

JBJS Case Connect. 2016 Oct-Dec;6(4):e93. doi: 10.2106/JBJS.CC.16.00076.

PMID:
29252747
15.

Human and avian running on uneven ground: a model-based comparison.

Müller R, Birn-Jeffery AV, Blum Y.

J R Soc Interface. 2016 Sep;13(122). pii: 20160529. Review.

16.

Preservation Analysis of Macrophage Gene Coexpression Between Human and Mouse Identifies PARK2 as a Genetically Controlled Master Regulator of Oxidative Phosphorylation in Humans.

Codoni V, Blum Y, Civelek M, Proust C, Franzén O; Cardiogenics Consortium; IDEM Leducq Consortium CADGenomics, Björkegren JL, Le Goff W, Cambien F, Lusis AJ, Trégouët DA.

G3 (Bethesda). 2016 Oct 13;6(10):3361-3371. doi: 10.1534/g3.116.033894.

17.

Cognitive Reserve and Postoperative Delirium in Older Adults.

Tow A, Holtzer R, Wang C, Sharan A, Kim SJ, Gladstein A, Blum Y, Verghese J.

J Am Geriatr Soc. 2016 Jun;64(6):1341-6. doi: 10.1111/jgs.14130.

18.

Sparse factor model for co-expression networks with an application using prior biological knowledge.

Blum Y, Houée-Bigot M, Causeur D.

Stat Appl Genet Mol Biol. 2016 Jun 1;15(3):253-72. doi: 10.1515/sagmb-2015-0002.

PMID:
27166726
19.

Frequency modulation of ERK activation dynamics rewires cell fate.

Ryu H, Chung M, Dobrzyński M, Fey D, Blum Y, Sik Lee S, Peter M, Kholodenko BN, Li Jeon N, Pertz O.

Mol Syst Biol. 2016 Apr 22;12(4):866. doi: 10.15252/msb.20166982. No abstract available.

20.

Erratum: Hepatic circadian clock oscillators and nuclear receptors integrate microbiome-derived signals.

Montagner A, Korecka A, Polizzi A, Lippi Y, Blum Y, Canlet C, Tremblay-Franco M, Gautier-Stein A, Burcelin R, Yen YC, Je HS, Al-Asmakh M, Mithieux G, Arulampalam V, Lagarrigue S, Guillou H, Pettersson S, Wahli W.

Sci Rep. 2016 Apr 20;6:23951. doi: 10.1038/srep23951. No abstract available.

21.

Hepatic circadian clock oscillators and nuclear receptors integrate microbiome-derived signals.

Montagner A, Korecka A, Polizzi A, Lippi Y, Blum Y, Canlet C, Tremblay-Franco M, Gautier-Stein A, Burcelin R, Yen YC, Je HS, Al-Asmakh M, Mithieux G, Arulampalam V, Lagarrigue S, Guillou H, Pettersson S, Wahli W.

Sci Rep. 2016 Feb 16;6:20127. doi: 10.1038/srep20127. Erratum in: Sci Rep. 2016;6:23951. Maha, Al-Asmakh [corrected to Al-Asmakh, Maha].

22.

Frequency modulation of ERK activation dynamics rewires cell fate.

Ryu H, Chung M, Dobrzyński M, Fey D, Blum Y, Lee SS, Peter M, Kholodenko BN, Jeon NL, Pertz O.

Mol Syst Biol. 2015 Nov 27;11(11):838. doi: 10.15252/msb.20156458. Erratum in: Mol Syst Biol. 2016 Apr;12(4):866.

23.

Bariatric Surgery Induces Disruption in Inflammatory Signaling Pathways Mediated by Immune Cells in Adipose Tissue: A RNA-Seq Study.

Poitou C, Perret C, Mathieu F, Truong V, Blum Y, Durand H, Alili R, Chelghoum N, Pelloux V, Aron-Wisnewsky J, Torcivia A, Bouillot JL, Parks BW, Ninio E, Clément K, Tiret L.

PLoS One. 2015 May 4;10(5):e0125718. doi: 10.1371/journal.pone.0125718. eCollection 2015.

24.

Combined QTL and selective sweep mappings with coding SNP annotation and cis-eQTL analysis revealed PARK2 and JAG2 as new candidate genes for adiposity regulation.

Roux PF, Boitard S, Blum Y, Parks B, Montagner A, Mouisel E, Djari A, Esquerré D, Désert C, Boutin M, Leroux S, Lecerf F, Le Bihan-Duval E, Klopp C, Servin B, Pitel F, Duclos MJ, Guillou H, Lusis AJ, Demeure O, Lagarrigue S.

G3 (Bethesda). 2015 Feb 3;5(4):517-29. doi: 10.1534/g3.115.016865.

25.

Don't break a leg: running birds from quail to ostrich prioritise leg safety and economy on uneven terrain.

Birn-Jeffery AV, Hubicki CM, Blum Y, Renjewski D, Hurst JW, Daley MA.

J Exp Biol. 2014 Nov 1;217(Pt 21):3786-96. doi: 10.1242/jeb.102640.

26.

Knee arthrotomy closure with barbed suture in flexion versus extension: a porcine study.

Kadimcherla P, Lovy AJ, Sambaziotis C, Blum Y, Hirsh DM, Kim SJ.

J Arthroplasty. 2014 Nov;29(11):2211-3. doi: 10.1016/j.arth.2014.07.023. Epub 2014 Jul 24.

PMID:
25134741
27.

Swing-leg trajectory of running guinea fowl suggests task-level priority of force regulation rather than disturbance rejection.

Blum Y, Vejdani HR, Birn-Jeffery AV, Hubicki CM, Hurst JW, Daley MA.

PLoS One. 2014 Jun 30;9(6):e100399. doi: 10.1371/journal.pone.0100399. eCollection 2014.

28.

Bio-inspired swing leg control for spring-mass robots running on ground with unexpected height disturbance.

Vejdani HR, Blum Y, Daley MA, Hurst JW.

Bioinspir Biomim. 2013 Dec;8(4):046006. doi: 10.1088/1748-3182/8/4/046006. Epub 2013 Oct 29.

PMID:
24166776
29.

Infection rate following total joint arthroplasty in the HIV population.

Capogna BM, Lovy A, Blum Y, Kim SJ, Felsen UR, Geller DS.

J Arthroplasty. 2013 Sep;28(8):1254-8. doi: 10.1016/j.arth.2012.12.021. Epub 2013 Mar 20.

PMID:
23523495
30.

The use of dermabond® as an adjunct to wound closure after total knee arthroplasty: examining immediate post-operative wound drainage.

El-Gazzar Y, Smith DC, Kim SJ, Hirsh DM, Blum Y, Cobelli M, Cohen HW.

J Arthroplasty. 2013 Apr;28(4):553-6. doi: 10.1016/j.arth.2012.07.038. Epub 2012 Oct 29.

PMID:
23114193
31.

Pleiotropic effects of polymorphism of the gene diacylglycerol-O-transferase 1 (DGAT1) in the mammary gland tissue of dairy cows.

Mach N, Blum Y, Bannink A, Causeur D, Houee-Bigot M, Lagarrigue S, Smits MA.

J Dairy Sci. 2012 Sep;95(9):4989-5000. doi: 10.3168/jds.2012-5348.

32.

Correcting fixed varus deformity with flexion contracture during total knee arthroplasty: the "inside-out" technique: AAOS exhibit selection.

Meftah M, Blum YC, Raja D, Ranawat AS, Ranawat CS.

J Bone Joint Surg Am. 2012 May 16;94(10):e66. doi: 10.2106/JBJS.K.01444.

PMID:
22617932
33.

Effects of a short proprioceptive neuromuscular facilitation stretching bout on quadriceps neuromuscular function, flexibility, and vertical jump performance.

Place N, Blum Y, Armand S, Maffiuletti NA, Behm DG.

J Strength Cond Res. 2013 Feb;27(2):463-70. doi: 10.1519/JSC.0b013e3182576ffe.

PMID:
22505131
34.

Complex trait subtypes identification using transcriptome profiling reveals an interaction between two QTL affecting adiposity in chicken.

Blum Y, Le Mignon G, Causeur D, Filangi O, Désert C, Demeure O, Le Roy P, Lagarrigue S.

BMC Genomics. 2011 Nov 21;12:567. doi: 10.1186/1471-2164-12-567.

35.

Distinct cellular mechanisms of blood vessel fusion in the zebrafish embryo.

Herwig L, Blum Y, Krudewig A, Ellertsdottir E, Lenard A, Belting HG, Affolter M.

Curr Biol. 2011 Nov 22;21(22):1942-8. doi: 10.1016/j.cub.2011.10.016. Epub 2011 Nov 10.

36.

AnnotQTL: a new tool to gather functional and comparative information on a genomic region.

Lecerf F, Bretaudeau A, Sallou O, Desert C, Blum Y, Lagarrigue S, Demeure O.

Nucleic Acids Res. 2011 Jul;39(Web Server issue):W328-33. doi: 10.1093/nar/gkr361. Epub 2011 May 19.

37.

Does a crouched leg posture enhance running stability and robustness?

Blum Y, Birn-Jeffery A, Daley MA, Seyfarth A.

J Theor Biol. 2011 Jul 21;281(1):97-106. doi: 10.1016/j.jtbi.2011.04.029. Epub 2011 May 11.

PMID:
21569779
38.

Robust and efficient walking with spring-like legs.

Rummel J, Blum Y, Seyfarth A.

Bioinspir Biomim. 2010 Dec;5(4):046004. doi: 10.1088/1748-3182/5/4/046004. Epub 2010 Nov 15.

PMID:
21079285
39.

A factor model to analyze heterogeneity in gene expression.

Blum Y, Le Mignon G, Lagarrigue S, Causeur D.

BMC Bioinformatics. 2010 Jul 2;11:368. doi: 10.1186/1471-2105-11-368.

40.

Swing leg control in human running.

Blum Y, Lipfert SW, Rummel J, Seyfarth A.

Bioinspir Biomim. 2010 Jun;5(2):026006. doi: 10.1088/1748-3182/5/2/026006. Epub 2010 May 24.

PMID:
20498515
41.

Vascular morphogenesis in the zebrafish embryo.

Ellertsdóttir E, Lenard A, Blum Y, Krudewig A, Herwig L, Affolter M, Belting HG.

Dev Biol. 2010 May 1;341(1):56-65. doi: 10.1016/j.ydbio.2009.10.035. Epub 2009 Nov 3. Review.

42.

A noncoding antisense RNA in tie-1 locus regulates tie-1 function in vivo.

Li K, Blum Y, Verma A, Liu Z, Pramanik K, Leigh NR, Chun CZ, Samant GV, Zhao B, Garnaas MK, Horswill MA, Stanhope SA, North PE, Miao RQ, Wilkinson GA, Affolter M, Ramchandran R.

Blood. 2010 Jan 7;115(1):133-9. doi: 10.1182/blood-2009-09-242180. Epub 2009 Oct 30. Erratum in: Blood. 2014 Oct 30;124(18):2893.

43.

Effective leg stiffness in running.

Blum Y, Lipfert SW, Seyfarth A.

J Biomech. 2009 Oct 16;42(14):2400-5. doi: 10.1016/j.jbiomech.2009.06.040. Epub 2009 Aug 3. Erratum in: J Biomech. 2010 Feb 10;43(3):595.

PMID:
19647825
44.

The squeaking hip: a phenomenon of ceramic-on-ceramic total hip arthroplasty.

Jarrett CA, Ranawat AS, Bruzzone M, Blum YC, Rodriguez JA, Ranawat CS.

J Bone Joint Surg Am. 2009 Jun;91(6):1344-9. doi: 10.2106/JBJS.F.00970.

PMID:
19487511
45.

Multimodal pain management after total hip and knee arthroplasty at the Ranawat Orthopaedic Center.

Maheshwari AV, Blum YC, Shekhar L, Ranawat AS, Ranawat CS.

Clin Orthop Relat Res. 2009 Jun;467(6):1418-23. doi: 10.1007/s11999-009-0728-7. Epub 2009 Feb 13.

46.

Regulation of cardiovascular development and integrity by the heart of glass-cerebral cavernous malformation protein pathway.

Kleaveland B, Zheng X, Liu JJ, Blum Y, Tung JJ, Zou Z, Sweeney SM, Chen M, Guo L, Lu MM, Zhou D, Kitajewski J, Affolter M, Ginsberg MH, Kahn ML.

Nat Med. 2009 Feb;15(2):169-76. doi: 10.1038/nm.1918. Epub 2009 Jan 18. Erratum in: Nat Med. 2009 May;15(5):584. Sweeney, Shawn M [added].

47.

Complex cell rearrangements during intersegmental vessel sprouting and vessel fusion in the zebrafish embryo.

Blum Y, Belting HG, Ellertsdottir E, Herwig L, Lüders F, Affolter M.

Dev Biol. 2008 Apr 15;316(2):312-22. doi: 10.1016/j.ydbio.2008.01.038. Epub 2008 Feb 13.

48.

Lymphoma masquerading as infection.

Blum YC, Esterhai JL, Esmail AN, Lackman RD, Donthineni-Rao R.

Clin Orthop Relat Res. 2005 Mar;(432):267-71.

PMID:
15738831
49.

Oscillations of the superconducting critical current in Nb-Cu-Ni-Cu-Nb junctions.

Blum Y, Tsukernik A, Karpovski M, Palevski A.

Phys Rev Lett. 2002 Oct 28;89(18):187004. Epub 2002 Oct 14.

PMID:
12398630

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