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Mechanical strain, novel genes and evolutionary insights: news from the frog left-right organizer.

Blum M, Ott T.

Curr Opin Genet Dev. 2019 Jun 7;56:8-14. doi: 10.1016/j.gde.2019.05.005. [Epub ahead of print] Review.


Local electronic structure of the peptide bond probed by resonant inelastic soft X-ray scattering.

Weinhardt L, Benkert A, Meyer F, Blum M, Hauschild D, Wilks RG, Bär M, Yang W, Zharnikov M, Reinert F, Heske C.

Phys Chem Chem Phys. 2019 Jun 28;21(24):13207-13214. doi: 10.1039/c9cp02481f. Epub 2019 Jun 10.


Mediastinal Nodal Involvement After Neoadjuvant Chemoradiation For Siewert II/III Adenocarcinoma.

Mitchell KG, Ikoma N, Nelson DB, Maru DM, Erasmus JJ, Weston BR, Vaporciyan AA, Antonoff MB, Mehran RJ, Rice DC, Roth JA, Swisher SG, Sepesi B, Walsh GL, Correa AM, Das P, Blum MA, Badgwell BD, Hofstetter WL.

Ann Thorac Surg. 2019 May 15. pii: S0003-4975(19)30697-6. doi: 10.1016/j.athoracsur.2019.04.024. [Epub ahead of print]


A synthetic epoxyeicosatrienoic acid analogue prevents the initiation of ischemic acute kidney injury.

Hoff U, Bubalo G, Fechner M, Blum M, Zhu Y, Pohlmann A, Hentschel J, Arakelyan K, Seeliger E, Flemming B, Gürgen D, Rothe M, Niendorf T, Manthati VL, Falck JR, Haase M, Schunck WH, Dragun D.

Acta Physiol (Oxf). 2019 May 11:e13297. doi: 10.1111/apha.13297. [Epub ahead of print]


The use of a hydrogel implant in the repair of osteochondral defects of the knee: A biomechanical evaluation of restoration of native contact pressures in cadaver knees.

Sismondo RA, Werner FW, Ordway NR, Osaheni AO, Blum MM, Scuderi MG.

Clin Biomech (Bristol, Avon). 2019 Apr 25;67:15-19. doi: 10.1016/j.clinbiomech.2019.04.016. [Epub ahead of print]


A dual function of FGF signaling in Xenopus left-right axis formation.

Schneider I, Kreis J, Schweickert A, Blum M, Vick P.

Development. 2019 May 10;146(9). pii: dev173575. doi: 10.1242/dev.173575.


Evidence of local adaptation in a waterfall-climbing Hawaiian goby fish derived from coupled biophysical modeling of larval dispersal and post-settlement selection.

Moody KN, Wren JLK, Kobayashi DR, Blum MJ, Ptacek MB, Blob RW, Toonen RJ, Schoenfuss HL, Childress MJ.

BMC Evol Biol. 2019 Apr 11;19(1):88. doi: 10.1186/s12862-019-1413-4.


Temporal Trends in Statin Prescriptions and Residual Cholesterol Risk in Patients With Stable Coronary Artery Disease Undergoing Percutaneous Coronary Intervention.

Guedeney P, Claessen BE, Baber U, Camaj A, Sorrentino S, Aquino M, Blum M, Chandiramani R, Goel R, Elsayed S, Kovacic JC, Sweeny J, Barman N, Moreno P, Dangas GD, Kini A, Sharma S, Mehran R.

Am J Cardiol. 2019 Jun 1;123(11):1788-1795. doi: 10.1016/j.amjcard.2019.03.005. Epub 2019 Mar 9.


Perinatal Outcomes of Small for Gestational Age Neonates Born With an Isolated Single Umbilical Artery.

Blum M, Weintraub AY, Baumfeld Y, Rotem R, Pariente G.

Front Pediatr. 2019 Mar 19;7:79. doi: 10.3389/fped.2019.00079. eCollection 2019.


Should endoscopic mucosal resection be attempted for cT2N0 esophageal cancer?

Nelson DB, Mitchell KG, Weston BR, Betancourt S, Maru D, Rice DC, Mehran RJ, Sepesi B, Antonoff MB, Walsh GL, Swisher SG, Roth JA, Vaporciyan AA, Blum M, Hofstetter WL.

Dis Esophagus. 2019 Mar 19. pii: doz016. doi: 10.1093/dote/doz016. [Epub ahead of print]


The Frog Xenopus as a Model to Study Joubert Syndrome: The Case of a Human Patient With Compound Heterozygous Variants in PIBF1.

Ott T, Kaufmann L, Granzow M, Hinderhofer K, Bartram CR, Theiß S, Seitz A, Paramasivam N, Schulz A, Moog U, Blum M, Evers CM.

Front Physiol. 2019 Feb 25;10:134. doi: 10.3389/fphys.2019.00134. eCollection 2019.


Unravelling the invasion history of the Asian tiger mosquito in Europe.

Sherpa S, Blum MGB, Capblancq T, Cumer T, Rioux D, Després L.

Mol Ecol. 2019 May;28(9):2360-2377. doi: 10.1111/mec.15071. Epub 2019 Apr 29.


Efficient Implementation of Penalized Regression for Genetic Risk Prediction.

Privé F, Aschard H, Blum MGB.

Genetics. 2019 May;212(1):65-74. doi: 10.1534/genetics.119.302019. Epub 2019 Feb 26.


Estimating effective population size for a cestode parasite infecting three-spined sticklebacks.

Strobel HM, Hays SJ, Moody KN, Blum MJ, Heins DC.

Parasitology. 2019 Jun;146(7):883-896. doi: 10.1017/S0031182018002226. Epub 2019 Feb 5.


Deep sequencing reveals multiclonality and new discrete typing units of Trypanosoma cruzi in rodents from the southern United States.

Pronovost H, Peterson AC, Chavez BG, Blum MJ, Dumonteil E, Herrera CP.

J Microbiol Immunol Infect. 2018 Dec 21. pii: S1684-1182(18)30097-5. doi: 10.1016/j.jmii.2018.12.004. [Epub ahead of print]


Pharmacy Provision of Medication Abortion in Nepal: Pharmacy Owner and Worker Perspectives.

Samari G, Puri M, Cohen R, Blum M, Rocca CH.

Int Perspect Sex Reprod Health. 2018 Sep 1;44(3). doi: 10.1363/44e6518. [Epub ahead of print]


Laparoscopic Hyperthermic Intraperitoneal Chemotherapy is Safe for Patients with Peritoneal Metastases from Gastric Cancer and May Lead to Gastrectomy.

Newhook TE, Agnes A, Blum M, Estrella JS, Das P, Ho L, Ajani JA, Minsky BD, Mansfield P, Badgwell BD.

Ann Surg Oncol. 2019 May;26(5):1394-1400. doi: 10.1245/s10434-018-07140-7. Epub 2019 Jan 24.


Diabetes-attributable mortality in the United States from 2003 to 2016 using a multiple-cause-of-death approach.

Rodriguez F, Blum MR, Falasinnu T, Hastings KG, Hu J, Cullen MR, Palaniappan LP.

Diabetes Res Clin Pract. 2019 Feb;148:169-178. doi: 10.1016/j.diabres.2019.01.015. Epub 2019 Jan 11.


Limitations and Misinterpretations of E-Values for Sensitivity Analyses of Observational Studies.

Ioannidis JPA, Tan YJ, Blum MR.

Ann Intern Med. 2019 Jan 1. doi: 10.7326/M18-2159. [Epub ahead of print]


How does exercise treatment compare with antihypertensive medications? A network meta-analysis of 391 randomised controlled trials assessing exercise and medication effects on systolic blood pressure.

Naci H, Salcher-Konrad M, Dias S, Blum MR, Sahoo SA, Nunan D, Ioannidis JPA.

Br J Sports Med. 2018 Dec 18. pii: bjsports-2018-099921. doi: 10.1136/bjsports-2018-099921. [Epub ahead of print] Review.


Functional characterization of a novel arachidonic acid 12S-lipoxygenase in the halotolerant bacterium Myxococcus fulvus exhibiting complex social living patterns.

Goloshchapova K, Stehling S, Heydeck D, Blum M, Kuhn H.

Microbiologyopen. 2018 Dec 17:e775. doi: 10.1002/mbo3.775. [Epub ahead of print]


Cosyntropin testing does not predict response to glucocorticoids in community-acquired pneumonia in a randomized controlled trial.

Blum CA, Schuetz P, Nigro N, Winzeler B, Arici B, Refardt J, Urwyler SA, Rodondi N, Blum MR, Briel M, Mueller B, Christ-Crain M.

Clin Endocrinol (Oxf). 2018 Nov 28. doi: 10.1111/cen.13907. [Epub ahead of print]


Rat Lungworm Infection in Rodents across Post-Katrina New Orleans, Louisiana, USA.

Rael RC, Peterson AC, Ghersi-Chavez B, Riegel C, Lesen AE, Blum MJ.

Emerg Infect Dis. 2018 Dec;24(12):2176-2183. doi: 10.3201/eid2412.180056.


An Early Function of Polycystin-2 for Left-Right Organizer Induction in Xenopus.

Vick P, Kreis J, Schneider I, Tingler M, Getwan M, Thumberger T, Beyer T, Schweickert A, Blum M.

iScience. 2018 Apr 27;2:76-85. doi: 10.1016/j.isci.2018.03.011. Epub 2018 Apr 7.


Chiral lipidomics of monoepoxy and monohydroxy metabolites derived from long-chain polyunsaturated fatty acids.

Blum M, Dogan I, Karber M, Rothe M, Schunck WH.

J Lipid Res. 2019 Jan;60(1):135-148. doi: 10.1194/jlr.M089755. Epub 2018 Nov 8.


InterPro in 2019: improving coverage, classification and access to protein sequence annotations.

Mitchell AL, Attwood TK, Babbitt PC, Blum M, Bork P, Bridge A, Brown SD, Chang HY, El-Gebali S, Fraser MI, Gough J, Haft DR, Huang H, Letunic I, Lopez R, Luciani A, Madeira F, Marchler-Bauer A, Mi H, Natale DA, Necci M, Nuka G, Orengo C, Pandurangan AP, Paysan-Lafosse T, Pesseat S, Potter SC, Qureshi MA, Rawlings ND, Redaschi N, Richardson LJ, Rivoire C, Salazar GA, Sangrador-Vegas A, Sigrist CJA, Sillitoe I, Sutton GG, Thanki N, Thomas PD, Tosatto SCE, Yong SY, Finn RD.

Nucleic Acids Res. 2019 Jan 8;47(D1):D351-D360. doi: 10.1093/nar/gky1100.


Using high-throughput sequencing for investigating intra-host hepatitis C evolution over long retrospective periods.

Caporossi A, Kulkarni O, Blum M, Leroy V, Morand P, Larrat S, François O.

Infect Genet Evol. 2019 Jan;67:136-144. doi: 10.1016/j.meegid.2018.11.004. Epub 2018 Nov 3.


The forensic geophysical controlled research site of the University of Brasilia, Brazil: Results from methods GPR and electrical resistivity tomography.

Cavalcanti MM, Rocha MP, Blum MLB, Borges WR.

Forensic Sci Int. 2018 Dec;293:101.e1-101.e21. doi: 10.1016/j.forsciint.2018.09.033. Epub 2018 Oct 9.


A century of genetic variation inferred from a persistent soil-stored seed bank.

Summers JL, Bernik B, Saunders CJ, McLachlan JS, Blum MJ.

Evol Appl. 2018 Jul 29;11(9):1715-1731. doi: 10.1111/eva.12675. eCollection 2018 Oct.


Can secondary contact following range expansion be distinguished from barriers to gene flow?

Bertl J, Ringbauer H, Blum MGB.

PeerJ. 2018 Oct 1;6:e5325. doi: 10.7717/peerj.5325. eCollection 2018.


The evolutionary conserved FOXJ1 target gene Fam183b is essential for motile cilia in Xenopus but dispensable for ciliary function in mice.

Beckers A, Ott T, Schuster-Gossler K, Boldt K, Alten L, Ueffing M, Blum M, Gossler A.

Sci Rep. 2018 Oct 2;8(1):14678. doi: 10.1038/s41598-018-33045-2.


Rubidium Fluoride Post-Deposition Treatment: Impact on the Chemical Structure of the Cu(In,Ga)Se2 Surface and CdS/Cu(In,Ga)Se2 Interface in Thin-Film Solar Cells.

Kreikemeyer-Lorenzo D, Hauschild D, Jackson P, Friedlmeier TM, Hariskos D, Blum M, Yang W, Reinert F, Powalla M, Heske C, Weinhardt L.

ACS Appl Mater Interfaces. 2018 Oct 31;10(43):37602-37608. doi: 10.1021/acsami.8b10005. Epub 2018 Oct 16.


A Dedicated Pediatric Spine Deformity Team Significantly Reduces Surgical Time and Cost.

Flynn JM, Striano BM, Muhly WT, Kraus B, Sankar WN, Mehta V, Blum M, DeZayas B, Feldman J, Keren R.

J Bone Joint Surg Am. 2018 Sep 19;100(18):1574-1580. doi: 10.2106/JBJS.17.01584.


Study protocol: a randomised controlled trial on the clinical effects of levothyroxine treatment for subclinical hypothyroidism in people aged 80 years and over.

Du Puy RS, Postmus I, Stott DJ, Blum MR, Poortvliet RKE, Den Elzen WPJ, Peeters RP, van Munster BC, Wolffenbuttel BHR, Westendorp RGJ, Kearney PM, Ford I, Kean S, Messow CM, Watt T, Jukema JW, Dekkers OM, Smit JWA, Rodondi N, Gussekloo J, Mooijaart SP.

BMC Endocr Disord. 2018 Sep 19;18(1):67. doi: 10.1186/s12902-018-0285-8.


Erroneous thyroid diagnosis due to over-the-counter biotin.

Charles S, Agrawal N, Blum M.

Nutrition. 2019 Jan;57:257-258. doi: 10.1016/j.nut.2018.05.005. Epub 2018 Jun 6.


A Homozygous Ancestral SVA-Insertion-Mediated Deletion in WDR66 Induces Multiple Morphological Abnormalities of the Sperm Flagellum and Male Infertility.

Kherraf ZE, Amiri-Yekta A, Dacheux D, Karaouzène T, Coutton C, Christou-Kent M, Martinez G, Landrein N, Le Tanno P, Fourati Ben Mustapha S, Halouani L, Marrakchi O, Makni M, Latrous H, Kharouf M, Pernet-Gallay K, Gourabi H, Robinson DR, Crouzy S, Blum M, Thierry-Mieg N, Touré A, Zouari R, Arnoult C, Bonhivers M, Ray PF.

Am J Hum Genet. 2018 Sep 6;103(3):400-412. doi: 10.1016/j.ajhg.2018.07.014. Epub 2018 Aug 16.


Phylogeography of the widespread creek chub Semotilus atromaculatus (Cypriniformes: Leuciscidae).

Schönhuth S, Gagne RB, Alda F, Neely DA, Mayden RL, Blum MJ.

J Fish Biol. 2018 Nov;93(5):778-791. doi: 10.1111/jfb.13778.


Author Correction: Allogenic and Autogenic Signals in the Stratigraphic Record of the Deep-Sea Bengal Fan.

Blum M, Rogers K, Gleason J, Najman Y, Cruz J, Fox L.

Sci Rep. 2018 Aug 10;8(1):12226. doi: 10.1038/s41598-018-30160-y.


Xenopus: An Undervalued Model Organism to Study and Model Human Genetic Disease.

Blum M, Ott T.

Cells Tissues Organs. 2018;205(5-6):303-313. doi: 10.1159/000490898. Epub 2018 Aug 9.


Power Outage Preparedness and Concern among Vulnerable New York City Residents.

Dominianni C, Ahmed M, Johnson S, Blum M, Ito K, Lane K.

J Urban Health. 2018 Oct;95(5):716-726. doi: 10.1007/s11524-018-0296-9.


Advice on chemical weapons sample stability and storage provided by the Scientific Advisory Board of the Organisation for the Prohibition of Chemical Weapons to increase investigative capabilities worldwide.

Timperley CM, Forman JE, Abdollahi M, Al-Amri AS, Alonso IP, Baulig A, Borrett V, Cariño FA, Curty C, Berrutti DG, Kovarik Z, Martínez-Álvarez R, Mikulak R, Mourão NMF, Ponnadurai R, Neffe S, Raza SK, Rubaylo V, Takeuchi K, Tang C, Trifirò F, van Straten FM, Vanninen PS, Zaitsev V, Waqar F, Zina MS, Blum MM, Gregg H, Fischer E, Sun S, Yang P.

Talanta. 2018 Oct 1;188:808-832. doi: 10.1016/j.talanta.2018.04.022. Epub 2018 Apr 27.


Pharmacy access to medical abortion from trained providers and post-abortion contraception in Nepal.

Puri MC, Harper CC, Maharjan D, Blum M, Rocca CH.

Int J Gynaecol Obstet. 2018 Nov;143(2):211-216. doi: 10.1002/ijgo.12595. Epub 2018 Aug 2.


Awareness, Risk Perception, and Protective Behaviors for Extreme Heat and Climate Change in New York City.

Madrigano J, Lane K, Petrovic N, Ahmed M, Blum M, Matte T.

Int J Environ Res Public Health. 2018 Jul 7;15(7). pii: E1433. doi: 10.3390/ijerph15071433.


Gestational dating using last menstrual period and bimanual exam for medication abortion in pharmacies and health centers in Nepal.

Averbach S, Puri M, Blum M, Rocca C.

Contraception. 2018 Oct;98(4):296-300. doi: 10.1016/j.contraception.2018.06.004. Epub 2018 Jun 21.


Loter: A software package to infer local ancestry for a wide range of species.

Dias-Alves T, Mairal J, Blum MGB.

Mol Biol Evol. 2018 Jun 20. doi: 10.1093/molbev/msy126. [Epub ahead of print]


Persisting responses of salt marsh fungal communities to the Deepwater Horizon oil spill.

Lumibao CY, Formel S, Elango V, Pardue JH, Blum M, Van Bael SA.

Sci Total Environ. 2018 Nov 15;642:904-913. doi: 10.1016/j.scitotenv.2018.06.077. Epub 2018 Jun 18.


Repeat staging laparoscopy for gastric cancer after preoperative therapy.

Thiels CA, Ikoma N, Fournier K, Das P, Blum M, Estrella JS, Minsky BD, Ajani J, Mansfield P, Badgwell BD.

J Surg Oncol. 2018 Jul;118(1):61-67. doi: 10.1002/jso.25094. Epub 2018 Jun 7.


Urban rat races: spatial population genomics of brown rats (Rattus norvegicus) compared across multiple cities.

Combs M, Byers KA, Ghersi BM, Blum MJ, Caccone A, Costa F, Himsworth CG, Richardson JL, Munshi-South J.

Proc Biol Sci. 2018 Jun 13;285(1880). pii: 20180245. doi: 10.1098/rspb.2018.0245.


Impact of Thyroid Hormone Therapy on Atherosclerosis in the Elderly With Subclinical Hypothyroidism: A Randomized Trial.

Blum MR, Gencer B, Adam L, Feller M, Collet TH, da Costa BR, Moutzouri E, Dopheide J, Depairon M, Sykiotis GP, Kearney P, Gussekloo J, Westendorp R, Stott DJ, Bauer DC, Rodondi N.

J Clin Endocrinol Metab. 2018 Aug 1;103(8):2988-2997. doi: 10.1210/jc.2018-00279.


Evaluation of redundancy analysis to identify signatures of local adaptation.

Capblancq T, Luu K, Blum MGB, Bazin E.

Mol Ecol Resour. 2018 Nov;18(6):1223-1233. doi: 10.1111/1755-0998.12906. Epub 2018 Jun 17.


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