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Items: 48

1.

The Genetic Basis of Mutation Rate Variation in Yeast.

Gou L, Bloom JS, Kruglyak L.

Genetics. 2019 Feb;211(2):731-740. doi: 10.1534/genetics.118.301609. Epub 2018 Nov 30.

2.

Shared Genomic Regions Underlie Natural Variation in Diverse Toxin Responses.

Evans KS, Brady SC, Bloom JS, Tanny RE, Cook DE, Giuliani SE, Hippleheuser SW, Zamanian M, Andersen EC.

Genetics. 2018 Dec;210(4):1509-1525. doi: 10.1534/genetics.118.301311. Epub 2018 Oct 19.

3.

Genetics of trans-regulatory variation in gene expression.

Albert FW, Bloom JS, Siegel J, Day L, Kruglyak L.

Elife. 2018 Jul 17;7. pii: e35471. doi: 10.7554/eLife.35471.

4.

Highly parallel genome variant engineering with CRISPR-Cas9.

Sadhu MJ, Bloom JS, Day L, Siegel JJ, Kosuri S, Kruglyak L.

Nat Genet. 2018 Apr;50(4):510-514. doi: 10.1038/s41588-018-0087-y. Epub 2018 Apr 9.

5.

Illuminating gravitational waves: A concordant picture of photons from a neutron star merger.

Kasliwal MM, Nakar E, Singer LP, Kaplan DL, Cook DO, Van Sistine A, Lau RM, Fremling C, Gottlieb O, Jencson JE, Adams SM, Feindt U, Hotokezaka K, Ghosh S, Perley DA, Yu PC, Piran T, Allison JR, Anupama GC, Balasubramanian A, Bannister KW, Bally J, Barnes J, Barway S, Bellm E, Bhalerao V, Bhattacharya D, Blagorodnova N, Bloom JS, Brady PR, Cannella C, Chatterjee D, Cenko SB, Cobb BE, Copperwheat C, Corsi A, De K, Dobie D, Emery SWK, Evans PA, Fox OD, Frail DA, Frohmaier C, Goobar A, Hallinan G, Harrison F, Helou G, Hinderer T, Ho AYQ, Horesh A, Ip WH, Itoh R, Kasen D, Kim H, Kuin NPM, Kupfer T, Lynch C, Madsen K, Mazzali PA, Miller AA, Mooley K, Murphy T, Ngeow CC, Nichols D, Nissanke S, Nugent P, Ofek EO, Qi H, Quimby RM, Rosswog S, Rusu F, Sadler EM, Schmidt P, Sollerman J, Steele I, Williamson AR, Xu Y, Yan L, Yatsu Y, Zhang C, Zhao W.

Science. 2017 Dec 22;358(6370):1559-1565. doi: 10.1126/science.aap9455. Epub 2017 Oct 16.

PMID:
29038373
6.

A cosmic multimessenger gold rush.

Bloom JS, Sigurdsson S.

Science. 2017 Oct 20;358(6361):301-302. doi: 10.1126/science.aaq0321. Epub 2017 Oct 16. No abstract available.

PMID:
29038370
7.

Genetic variation in adaptability and pleiotropy in budding yeast.

Jerison ER, Kryazhimskiy S, Mitchell JK, Bloom JS, Kruglyak L, Desai MM.

Elife. 2017 Aug 17;6. pii: e27167. doi: 10.7554/eLife.27167.

8.

Accounting for genetic interactions improves modeling of individual quantitative trait phenotypes in yeast.

Forsberg SK, Bloom JS, Sadhu MJ, Kruglyak L, Carlborg Ö.

Nat Genet. 2017 Apr;49(4):497-503. doi: 10.1038/ng.3800. Epub 2017 Feb 27.

9.

Genome to Phenome Mapping in Apple Using Historical Data.

Migicovsky Z, Gardner KM, Money D, Sawler J, Bloom JS, Moffett P, Chao CT, Schwaninger H, Fazio G, Zhong GY, Myles S.

Plant Genome. 2016 Jul;9(2). doi: 10.3835/plantgenome2015.11.0113.

10.

CRISPR-directed mitotic recombination enables genetic mapping without crosses.

Sadhu MJ, Bloom JS, Day L, Kruglyak L.

Science. 2016 May 27;352(6289):1113-6. doi: 10.1126/science.aaf5124. Epub 2016 May 5.

11.

Genetic interactions contribute less than additive effects to quantitative trait variation in yeast.

Bloom JS, Kotenko I, Sadhu MJ, Treusch S, Albert FW, Kruglyak L.

Nat Commun. 2015 Nov 5;6:8712. doi: 10.1038/ncomms9712.

12.

Genetic screening reveals a link between Wnt signaling and antitubulin drugs.

Khan AH, Bloom JS, Faridmoayer E, Smith DJ.

Pharmacogenomics J. 2016 Apr;16(2):164-72. doi: 10.1038/tpj.2015.50. Epub 2015 Jul 7.

13.

Genetics of Intraspecies Variation in Avoidance Behavior Induced by a Thermal Stimulus in Caenorhabditis elegans.

Ghosh R, Bloom JS, Mohammadi A, Schumer ME, Andolfatto P, Ryu W, Kruglyak L.

Genetics. 2015 Aug;200(4):1327-39. doi: 10.1534/genetics.115.178491. Epub 2015 Jun 19.

14.

A Powerful New Quantitative Genetics Platform, Combining Caenorhabditis elegans High-Throughput Fitness Assays with a Large Collection of Recombinant Strains.

Andersen EC, Shimko TC, Crissman JR, Ghosh R, Bloom JS, Seidel HS, Gerke JP, Kruglyak L.

G3 (Bethesda). 2015 Mar 13;5(5):911-20. doi: 10.1534/g3.115.017178.

15.

Genetic mapping of MAPK-mediated complex traits Across S. cerevisiae.

Treusch S, Albert FW, Bloom JS, Kotenko IE, Kruglyak L.

PLoS Genet. 2015 Jan 8;11(1):e1004913. doi: 10.1371/journal.pgen.1004913. eCollection 2015 Jan.

16.

A variant in the neuropeptide receptor npr-1 is a major determinant of Caenorhabditis elegans growth and physiology.

Andersen EC, Bloom JS, Gerke JP, Kruglyak L.

PLoS Genet. 2014 Feb 27;10(2):e1004156. doi: 10.1371/journal.pgen.1004156. eCollection 2014 Feb. Erratum in: PLoS Genet. 2014 Mar;10(3):e1004316.

17.

Genetics of single-cell protein abundance variation in large yeast populations.

Albert FW, Treusch S, Shockley AH, Bloom JS, Kruglyak L.

Nature. 2014 Feb 27;506(7489):494-7. doi: 10.1038/nature12904. Epub 2014 Jan 8.

18.

Planum temporale morphology in children with developmental dyslexia.

Bloom JS, Garcia-Barrera MA, Miller CJ, Miller SR, Hynd GW.

Neuropsychologia. 2013 Aug;51(9):1684-92. doi: 10.1016/j.neuropsychologia.2013.05.012. Epub 2013 May 22.

19.

An outburst from a massive star 40 days before a supernova explosion.

Ofek EO, Sullivan M, Cenko SB, Kasliwal MM, Gal-Yam A, Kulkarni SR, Arcavi I, Bildsten L, Bloom JS, Horesh A, Howell DA, Filippenko AV, Laher R, Murray D, Nakar E, Nugent PE, Silverman JM, Shaviv NJ, Surace J, Yaron O.

Nature. 2013 Feb 7;494(7435):65-7. doi: 10.1038/nature11877.

PMID:
23389540
20.

Finding the sources of missing heritability in a yeast cross.

Bloom JS, Ehrenreich IM, Loo WT, Lite TL, Kruglyak L.

Nature. 2013 Feb 14;494(7436):234-7. doi: 10.1038/nature11867. Epub 2013 Feb 3.

21.

PTF 11kx: a type Ia supernova with a symbiotic nova progenitor.

Dilday B, Howell DA, Cenko SB, Silverman JM, Nugent PE, Sullivan M, Ben-Ami S, Bildsten L, Bolte M, Endl M, Filippenko AV, Gnat O, Horesh A, Hsiao E, Kasliwal MM, Kirkman D, Maguire K, Marcy GW, Moore K, Pan Y, Parrent JT, Podsiadlowski P, Quimby RM, Sternberg A, Suzuki N, Tytler DR, Xu D, Bloom JS, Gal-Yam A, Hook IM, Kulkarni SR, Law NM, Ofek EO, Polishook D, Poznanski D.

Science. 2012 Aug 24;337(6097):942-5. doi: 10.1126/science.1219164.

22.

Quantitative measurement of allele-specific protein expression in a diploid yeast hybrid by LC-MS.

Khan Z, Bloom JS, Amini S, Singh M, Perlman DH, Caudy AA, Kruglyak L.

Mol Syst Biol. 2012;8:602. doi: 10.1038/msb.2012.34.

23.

Chromosome-scale selective sweeps shape Caenorhabditis elegans genomic diversity.

Andersen EC, Gerke JP, Shapiro JA, Crissman JR, Ghosh R, Bloom JS, Félix MA, Kruglyak L.

Nat Genet. 2012 Jan 29;44(3):285-90. doi: 10.1038/ng.1050.

24.

Accurate proteome-wide protein quantification from high-resolution 15N mass spectra.

Khan Z, Amini S, Bloom JS, Ruse C, Caudy AA, Kruglyak L, Singh M, Perlman DH, Tavazoie S.

Genome Biol. 2011 Dec 19;12(12):R122. doi: 10.1186/gb-2011-12-12-r122.

25.

Exclusion of a luminous red giant as a companion star to the progenitor of supernova SN 2011fe.

Li W, Bloom JS, Podsiadlowski P, Miller AA, Cenko SB, Jha SW, Sullivan M, Howell DA, Nugent PE, Butler NR, Ofek EO, Kasliwal MM, Richards JW, Stockton A, Shih HY, Bildsten L, Shara MM, Bibby J, Filippenko AV, Ganeshalingam M, Silverman JM, Kulkarni SR, Law NM, Poznanski D, Quimby RM, McCully C, Patel B, Maguire K, Shen KJ.

Nature. 2011 Dec 14;480(7377):348-50. doi: 10.1038/nature10646.

PMID:
22170681
26.

Supernova SN 2011fe from an exploding carbon-oxygen white dwarf star.

Nugent PE, Sullivan M, Cenko SB, Thomas RC, Kasen D, Howell DA, Bersier D, Bloom JS, Kulkarni SR, Kandrashoff MT, Filippenko AV, Silverman JM, Marcy GW, Howard AW, Isaacson HT, Maguire K, Suzuki N, Tarlton JE, Pan YC, Bildsten L, Fulton BJ, Parrent JT, Sand D, Podsiadlowski P, Bianco FB, Dilday B, Graham ML, Lyman J, James P, Kasliwal MM, Law NM, Quimby RM, Hook IM, Walker ES, Mazzali P, Pian E, Ofek EO, Gal-Yam A, Poznanski D.

Nature. 2011 Dec 14;480(7377):344-7. doi: 10.1038/nature10644.

PMID:
22170680
27.

Circumstellar material in type Ia supernovae via sodium absorption features.

Sternberg A, Gal-Yam A, Simon JD, Leonard DC, Quimby RM, Phillips MM, Morrell N, Thompson IB, Ivans I, Marshall JL, Filippenko AV, Marcy GW, Bloom JS, Patat F, Foley RJ, Yong D, Penprase BE, Beeler DJ, Allende Prieto C, Stringfellow GS.

Science. 2011 Aug 12;333(6044):856-9. doi: 10.1126/science.1203836.

28.

A possible relativistic jetted outburst from a massive black hole fed by a tidally disrupted star.

Bloom JS, Giannios D, Metzger BD, Cenko SB, Perley DA, Butler NR, Tanvir NR, Levan AJ, O'Brien PT, Strubbe LE, De Colle F, Ramirez-Ruiz E, Lee WH, Nayakshin S, Quataert E, King AR, Cucchiara A, Guillochon J, Bower GC, Fruchter AS, Morgan AN, van der Horst AJ.

Science. 2011 Jul 8;333(6039):203-6. doi: 10.1126/science.1207150. Epub 2011 Jun 16.

29.

An extremely luminous panchromatic outburst from the nucleus of a distant galaxy.

Levan AJ, Tanvir NR, Cenko SB, Perley DA, Wiersema K, Bloom JS, Fruchter AS, Postigo Ade U, O'Brien PT, Butler N, van der Horst AJ, Leloudas G, Morgan AN, Misra K, Bower GC, Farihi J, Tunnicliffe RL, Modjaz M, Silverman JM, Hjorth J, Thöne C, Cucchiara A, Cerón JM, Castro-Tirado AJ, Arnold JA, Bremer M, Brodie JP, Carroll T, Cooper MC, Curran PA, Cutri RM, Ehle J, Forbes D, Fynbo J, Gorosabel J, Graham J, Hoffman DI, Guziy S, Jakobsson P, Kamble A, Kerr T, Kasliwal MM, Kouveliotou C, Kocevski D, Law NM, Nugent PE, Ofek EO, Poznanski D, Quimby RM, Rol E, Romanowsky AJ, Sánchez-Ramírez R, Schulze S, Singh N, van Spaandonk L, Starling RL, Strom RG, Tello JC, Vaduvescu O, Wheatley PJ, Wijers RA, Winters JM, Xu D.

Science. 2011 Jul 8;333(6039):199-202. doi: 10.1126/science.1207143. Epub 2011 Jun 16.

30.

Quantitative proteomics reveals direct and indirect alterations in the histone code following methyltransferase knockdown.

Plazas-Mayorca MD, Bloom JS, Zeissler U, Leroy G, Young NL, DiMaggio PA, Krugylak L, Schneider R, Garcia BA.

Mol Biosyst. 2010 Sep;6(9):1719-29. doi: 10.1039/c003307c. Epub 2010 Jun 24.

31.

Reading fluency: implications for the assessment of children with reading disabilities.

Meisinger EB, Bloom JS, Hynd GW.

Ann Dyslexia. 2010 Jun;60(1):1-17. doi: 10.1007/s11881-009-0031-z. Epub 2009 Dec 24.

PMID:
20033795
32.

Supernova 2007bi as a pair-instability explosion.

Gal-Yam A, Mazzali P, Ofek EO, Nugent PE, Kulkarni SR, Kasliwal MM, Quimby RM, Filippenko AV, Cenko SB, Chornock R, Waldman R, Kasen D, Sullivan M, Beshore EC, Drake AJ, Thomas RC, Bloom JS, Poznanski D, Miller AA, Foley RJ, Silverman JM, Arcavi I, Ellis RS, Deng J.

Nature. 2009 Dec 3;462(7273):624-7. doi: 10.1038/nature08579.

PMID:
19956255
33.

An unusually fast-evolving supernova.

Poznanski D, Chornock R, Nugent PE, Bloom JS, Filippenko AV, Ganeshalingam M, Leonard DC, Li W, Thomas RC.

Science. 2010 Jan 1;327(5961):58-60. doi: 10.1126/science.1181709. Epub 2009 Nov 5.

34.

A gamma-ray burst at a redshift of z approximately 8.2.

Tanvir NR, Fox DB, Levan AJ, Berger E, Wiersema K, Fynbo JP, Cucchiara A, Krühler T, Gehrels N, Bloom JS, Greiner J, Evans PA, Rol E, Olivares F, Hjorth J, Jakobsson P, Farihi J, Willingale R, Starling RL, Cenko SB, Perley D, Maund JR, Duke J, Wijers RA, Adamson AJ, Allan A, Bremer MN, Burrows DN, Castro-Tirado AJ, Cavanagh B, de Ugarte Postigo A, Dopita MA, Fatkhullin TA, Fruchter AS, Foley RJ, Gorosabel J, Kennea J, Kerr T, Klose S, Krimm HA, Komarova VN, Kulkarni SR, Moskvitin AS, Mundell CG, Naylor T, Page K, Penprase BE, Perri M, Podsiadlowski P, Roth K, Rutledge RE, Sakamoto T, Schady P, Schmidt BP, Soderberg AM, Sollerman J, Stephens AW, Stratta G, Ukwatta TN, Watson D, Westra E, Wold T, Wolf C.

Nature. 2009 Oct 29;461(7268):1254-7. doi: 10.1038/nature08459.

PMID:
19865165
35.

Protein quantification across hundreds of experimental conditions.

Khan Z, Bloom JS, Garcia BA, Singh M, Kruglyak L.

Proc Natl Acad Sci U S A. 2009 Sep 15;106(37):15544-8. doi: 10.1073/pnas.0904100106. Epub 2009 Aug 26.

36.

Measuring differential gene expression by short read sequencing: quantitative comparison to 2-channel gene expression microarrays.

Bloom JS, Khan Z, Kruglyak L, Singh M, Caudy AA.

BMC Genomics. 2009 May 12;10:221. doi: 10.1186/1471-2164-10-221.

37.

A practical algorithm for finding maximal exact matches in large sequence datasets using sparse suffix arrays.

Khan Z, Bloom JS, Kruglyak L, Singh M.

Bioinformatics. 2009 Jul 1;25(13):1609-16. doi: 10.1093/bioinformatics/btp275. Epub 2009 Apr 23.

38.

Screening reveals conserved and nonconserved transcriptional regulatory elements including an E3/E4 allele-dependent APOE coding region enhancer.

Chen HP, Lin A, Bloom JS, Khan AH, Park CC, Smith DJ.

Genomics. 2008 Nov;92(5):292-300. doi: 10.1016/j.ygeno.2008.07.009. Epub 2008 Sep 3.

39.

Fine mapping of regulatory loci for mammalian gene expression using radiation hybrids.

Park CC, Ahn S, Bloom JS, Lin A, Wang RT, Wu T, Sekar A, Khan AH, Farr CJ, Lusis AJ, Leahy RM, Lange K, Smith DJ.

Nat Genet. 2008 Apr;40(4):421-9. doi: 10.1038/ng.113. Epub 2008 Mar 23. Erratum in: Nat Genet. 2008 May;40(5):682.

40.

Mitochondrial dysfunction, oxidative stress, and apoptosis revealed by proteomic and transcriptomic analyses of the striata in two mouse models of Parkinson's disease.

Chin MH, Qian WJ, Wang H, Petyuk VA, Bloom JS, Sforza DM, Laćan G, Liu D, Khan AH, Cantor RM, Bigelow DJ, Melega WP, Camp DG 2nd, Smith RD, Smith DJ.

J Proteome Res. 2008 Feb;7(2):666-77. doi: 10.1021/pr070546l.

41.

Testing the double-deficit hypothesis in an adult sample.

Miller CJ, Miller SR, Bloom JS, Jones L, Lindstrom W, Craggs J, Garcia-Barrera M, Semrud-Clikeman M, Gilger JW, Hynd GW.

Ann Dyslexia. 2006 Jun;56(1):83-102.

PMID:
17849209
42.

No supernovae associated with two long-duration gamma-ray bursts.

Fynbo JP, Watson D, Thöne CC, Sollerman J, Bloom JS, Davis TM, Hjorth J, Jakobsson P, Jørgensen UG, Graham JF, Fruchter AS, Bersier D, Kewley L, Cassan A, Cerón JM, Foley S, Gorosabel J, Hinse TC, Horne KD, Jensen BL, Klose S, Kocevski D, Marquette JB, Perley D, Ramirez-Ruiz E, Stritzinger MD, Vreeswijk PM, Wijers RA, Woller KG, Xu D, Zub M.

Nature. 2006 Dec 21;444(7122):1047-9.

PMID:
17183316
43.

Right hemisphere brain morphology, attention-deficit hyperactivity disorder (ADHD) subtype, and social comprehension.

Miller SR, Miller CJ, Bloom JS, Hynd GW, Craggs JG.

J Child Neurol. 2006 Feb;21(2):139-44.

PMID:
16566878
44.

The role of the corpus callosum in interhemispheric transfer of information: excitation or inhibition?

Bloom JS, Hynd GW.

Neuropsychol Rev. 2005 Jun;15(2):59-71. Review.

PMID:
16211466
45.

An infrared flash contemporaneous with the gamma-rays of GRB 041219a.

Blake CH, Bloom JS, Starr DL, Falco EE, Skrutskie M, Fenimore EE, Duchêne G, Szentgyorgyi A, Hornstein S, Prochaska JX, McCabe C, Ghez A, Konopacky Q, Stapelfeldt K, Hurley K, Campbell R, Kassis M, Chaffee F, Gehrels N, Barthelmy S, Cummings JR, Hullinger D, Krimm HA, Markwardt CB, Palmer D, Parsons A, McLean K, Tueller J.

Nature. 2005 May 12;435(7039):181-4.

PMID:
15889085
46.

The Radio Afterglow and the Host Galaxy of the X-Ray-rich GRB 981226.

Frail DA, Kulkarni SR, Bloom JS, Djorgovski SG, Gorjian V V, Gal RR, Meltzer J, Sari R, Chaffee FH, Goodrich R, Frontera F, Costa E.

Astrophys J. 1999 Nov 10;525(2):L81-L84.

PMID:
10525459
47.

Detecting elder abuse: a guide for physicians.

Bloom JS, Ansell P, Bloom MN.

Geriatrics. 1989 Jun;44(6):40-4, 56.

PMID:
2721968
48.

Increased utilization of influenza and pneumococcal vaccines in an elderly hospitalized population.

Bloom HG, Bloom JS, Krasnoff L, Frank AD.

J Am Geriatr Soc. 1988 Oct;36(10):897-901.

PMID:
3171029

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