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Items: 1 to 50 of 60

1.

Read-SpaM: assembly-free and alignment-free comparison of bacterial genomes with low sequencing coverage.

Lau AK, Dörrer S, Leimeister CA, Bleidorn C, Morgenstern B.

BMC Bioinformatics. 2019 Dec 17;20(Suppl 20):638. doi: 10.1186/s12859-019-3205-7.

2.
3.

Prot-SpaM: fast alignment-free phylogeny reconstruction based on whole-proteome sequences.

Leimeister CA, Schellhorn J, Dörrer S, Gerth M, Bleidorn C, Morgenstern B.

Gigascience. 2019 Mar 1;8(3). pii: giy148. doi: 10.1093/gigascience/giy148.

4.

Divergent evolution in the genomes of closely related lacertids, Lacerta viridis and L. bilineata, and implications for speciation.

Kolora SRR, Weigert A, Saffari A, Kehr S, Walter Costa MB, Spröer C, Indrischek H, Chintalapati M, Lohse K, Doose G, Overmann J, Bunk B, Bleidorn C, Grimm-Seyfarth A, Henle K, Nowick K, Faria R, Stadler PF, Schlegel M.

Gigascience. 2019 Feb 1;8(2). pii: giy160. doi: 10.1093/gigascience/giy160.

5.

Convergent evolution of the ladder-like ventral nerve cord in Annelida.

Helm C, Beckers P, Bartolomaeus T, Drukewitz SH, Kourtesis I, Weigert A, Purschke G, Worsaae K, Struck TH, Bleidorn C.

Front Zool. 2018 Sep 27;15:36. doi: 10.1186/s12983-018-0280-y. eCollection 2018.

6.

Expression of vasa, piwi, and nanos during gametogenesis in Typosyllis antoni (Annelida, Syllidae).

Ponz-Segrelles G, Bleidorn C, Aguado MT.

Evol Dev. 2018 Sep;20(5):132-145. doi: 10.1111/ede.12263. Epub 2018 Aug 9.

PMID:
30094969
7.

Phylogenomic analysis of Apoidea sheds new light on the sister group of bees.

Sann M, Niehuis O, Peters RS, Mayer C, Kozlov A, Podsiadlowski L, Bank S, Meusemann K, Misof B, Bleidorn C, Ohl M.

BMC Evol Biol. 2018 May 18;18(1):71. doi: 10.1186/s12862-018-1155-8.

8.

Regeneration mechanisms in Syllidae (Annelida).

Ribeiro RP, Bleidorn C, Aguado MT.

Regeneration (Oxf). 2018 Apr 14;5(1):26-42. doi: 10.1002/reg2.98. eCollection 2018 Mar. Review.

9.

A critical re-evaluation of multilocus sequence typing (MLST) efforts in Wolbachia.

Bleidorn C, Gerth M.

FEMS Microbiol Ecol. 2018 Jan 1;94(1). doi: 10.1093/femsec/fix163.

PMID:
29186405
10.

Green lacewings (Neuroptera: Chrysopidae) are commonly associated with a diversity of rickettsial endosymbionts.

Gerth M, Wolf R, Bleidorn C, Richter J, Sontowski R, Unrein J, Schlegel M, Gruppe A.

Zoological Lett. 2017 Aug 14;3:12. doi: 10.1186/s40851-017-0072-9. eCollection 2017.

11.

Early evolution of radial glial cells in Bilateria.

Helm C, Karl A, Beckers P, Kaul-Strehlow S, Ulbricht E, Kourtesis I, Kuhrt H, Hausen H, Bartolomaeus T, Reichenbach A, Bleidorn C.

Proc Biol Sci. 2017 Jul 26;284(1859). pii: 20170743. doi: 10.1098/rspb.2017.0743.

12.

Comparative analyses of glycerotoxin expression unveil a novel structural organization of the bloodworm venom system.

Richter S, Helm C, Meunier FA, Hering L, Campbell LI, Drukewitz SH, Undheim EA, Jenner RA, Schiavo G, Bleidorn C.

BMC Evol Biol. 2017 Mar 4;17(1):64. doi: 10.1186/s12862-017-0904-4.

13.

Comparative genomics provides a timeframe for Wolbachia evolution and exposes a recent biotin synthesis operon transfer.

Gerth M, Bleidorn C.

Nat Microbiol. 2016 Dec 22;2:16241. doi: 10.1038/nmicrobiol.2016.241.

PMID:
28005061
14.

Comparative transcriptomics enlarges the toolkit of known developmental genes in mollusks.

De Oliveira AL, Wollesen T, Kristof A, Scherholz M, Redl E, Todt C, Bleidorn C, Wanninger A.

BMC Genomics. 2016 Nov 10;17(1):905.

15.
16.

Syllidae mitochondrial gene order is unusually variable for Annelida.

Aguado MT, Richter S, Sontowski R, Golombek A, Struck TH, Bleidorn C.

Gene. 2016 Dec 5;594(1):89-96. doi: 10.1016/j.gene.2016.08.050. Epub 2016 Aug 30.

PMID:
27590441
17.

BaitFisher: A Software Package for Multispecies Target DNA Enrichment Probe Design.

Mayer C, Sann M, Donath A, Meixner M, Podsiadlowski L, Peters RS, Petersen M, Meusemann K, Liere K, Wägele JW, Misof B, Bleidorn C, Ohl M, Niehuis O.

Mol Biol Evol. 2016 Jul;33(7):1875-86. doi: 10.1093/molbev/msw056. Epub 2016 Mar 23.

PMID:
27009209
18.

The complete mitochondrial genome of Lacerta bilineata and comparison with its closely related congener L. Viridis.

Kolora SR, Faria R, Weigert A, Schaffer S, Grimm A, Henle K, Sahyoun AH, Stadler PF, Nowick K, Bleidorn C, Schlegel M.

Mitochondrial DNA A DNA Mapp Seq Anal. 2017 Jan;28(1):116-118. doi: 10.3109/19401736.2015.1111349. Epub 2015 Dec 28.

PMID:
26709540
19.

Wolbachia distribution in selected beetle taxa characterized by PCR screens and MLST data.

Sontowski R, Bernhard D, Bleidorn C, Schlegel M, Gerth M.

Ecol Evol. 2015 Sep 16;5(19):4345-53. doi: 10.1002/ece3.1641. eCollection 2015 Oct.

20.

Morphological investigations of posttraumatic regeneration in Timarete cf. punctata (Annelida: Cirratulidae).

Weidhase M, Helm C, Bleidorn C.

Zoological Lett. 2015 Aug 6;1:20. doi: 10.1186/s40851-015-0023-2. eCollection 2015.

21.

Myoanatomy and anterior muscle regeneration of the fireworm Eurythoe cf. complanata (Annelida: Amphinomidae).

Weidhase M, Bleidorn C, Beckers P, Helm C.

J Morphol. 2016 Mar;277(3):306-15. doi: 10.1002/jmor.20496. Epub 2015 Nov 23.

PMID:
26596681
22.

The Utility of Genome Skimming for Phylogenomic Analyses as Demonstrated for Glycerid Relationships (Annelida, Glyceridae).

Richter S, Schwarz F, Hering L, Böggemann M, Bleidorn C.

Genome Biol Evol. 2015 Nov 19;7(12):3443-62. doi: 10.1093/gbe/evv224.

23.

Characterization of the complete mitochondrial genomes from Polycladida (Platyhelminthes) using next-generation sequencing.

Aguado MT, Grande C, Gerth M, Bleidorn C, Noreña C.

Gene. 2016 Jan 10;575(2 Pt 1):199-205. doi: 10.1016/j.gene.2015.08.054. Epub 2015 Aug 29.

PMID:
26325071
24.

Evolution of mitochondrial gene order in Annelida.

Weigert A, Golombek A, Gerth M, Schwarz F, Struck TH, Bleidorn C.

Mol Phylogenet Evol. 2016 Jan;94(Pt A):196-206. doi: 10.1016/j.ympev.2015.08.008. Epub 2015 Aug 20.

PMID:
26299879
25.

The evolution of annelids reveals two adaptive routes to the interstitial realm.

Struck TH, Golombek A, Weigert A, Franke FA, Westheide W, Purschke G, Bleidorn C, Halanych KM.

Curr Biol. 2015 Aug 3;25(15):1993-9. doi: 10.1016/j.cub.2015.06.007. Epub 2015 Jul 23.

26.

The making of a branching annelid: an analysis of complete mitochondrial genome and ribosomal data of Ramisyllis multicaudata.

Aguado MT, Glasby CJ, Schroeder PC, Weigert A, Bleidorn C.

Sci Rep. 2015 Jul 17;5:12072. doi: 10.1038/srep12072.

27.

Extensive screen for bacterial endosymbionts reveals taxon-specific distribution patterns among bees (Hymenoptera, Anthophila).

Gerth M, Saeed A, White JA, Bleidorn C.

FEMS Microbiol Ecol. 2015 Jun;91(6). pii: fiv047. doi: 10.1093/femsec/fiv047. Epub 2015 Apr 26.

PMID:
25914139
28.

An immunocytochemical window into the development of Platynereis massiliensis (Annelida, Nereididae).

Helm C, Adamo H, Hourdez S, Bleidorn C.

Int J Dev Biol. 2014;58(6-8):613-22. doi: 10.1387/ijdb.140081cb.

29.

Phylogenomic analyses uncover origin and spread of the Wolbachia pandemic.

Gerth M, Gansauge MT, Weigert A, Bleidorn C.

Nat Commun. 2014 Oct 6;5:5117. doi: 10.1038/ncomms6117.

PMID:
25283608
30.

A Polychaete's powerful punch: venom gland transcriptomics of Glycera reveals a complex cocktail of toxin homologs.

von Reumont BM, Campbell LI, Richter S, Hering L, Sykes D, Hetmank J, Jenner RA, Bleidorn C.

Genome Biol Evol. 2014 Sep 5;6(9):2406-23. doi: 10.1093/gbe/evu190.

31.

Structure and anterior regeneration of musculature and nervous system in Cirratulus cf. cirratus (Cirratulidae, Annelida).

Weidhase M, Bleidorn C, Helm C.

J Morphol. 2014 Dec;275(12):1418-30. doi: 10.1002/jmor.20316. Epub 2014 Aug 2.

PMID:
25088965
32.

Platyzoan paraphyly based on phylogenomic data supports a noncoelomate ancestry of spiralia.

Struck TH, Wey-Fabrizius AR, Golombek A, Hering L, Weigert A, Bleidorn C, Klebow S, Iakovenko N, Hausdorf B, Petersen M, Kück P, Herlyn H, Hankeln T.

Mol Biol Evol. 2014 Jul;31(7):1833-49. doi: 10.1093/molbev/msu143. Epub 2014 Apr 18.

PMID:
24748651
33.

Illuminating the base of the annelid tree using transcriptomics.

Weigert A, Helm C, Meyer M, Nickel B, Arendt D, Hausdorf B, Santos SR, Halanych KM, Purschke G, Bleidorn C, Struck TH.

Mol Biol Evol. 2014 Jun;31(6):1391-401. doi: 10.1093/molbev/msu080. Epub 2014 Feb 23.

PMID:
24567512
34.

Early divergence, broad distribution, and high diversity of animal chitin synthases.

Zakrzewski AC, Weigert A, Helm C, Adamski M, Adamska M, Bleidorn C, Raible F, Hausen H.

Genome Biol Evol. 2014 Feb;6(2):316-25. doi: 10.1093/gbe/evu011.

35.

The first venomous crustacean revealed by transcriptomics and functional morphology: remipede venom glands express a unique toxin cocktail dominated by enzymes and a neurotoxin.

von Reumont BM, Blanke A, Richter S, Alvarez F, Bleidorn C, Jenner RA.

Mol Biol Evol. 2014 Jan;31(1):48-58. doi: 10.1093/molbev/mst199. Epub 2013 Oct 16.

36.

Tracing horizontal Wolbachia movements among bees (Anthophila): a combined approach using multilocus sequence typing data and host phylogeny.

Gerth M, Röthe J, Bleidorn C.

Mol Ecol. 2013 Dec;22(24):6149-62. doi: 10.1111/mec.12549. Epub 2013 Nov 7.

PMID:
24118435
37.

A comprehensive analysis of bilaterian mitochondrial genomes and phylogeny.

Bernt M, Bleidorn C, Braband A, Dambach J, Donath A, Fritzsch G, Golombek A, Hadrys H, Jühling F, Meusemann K, Middendorf M, Misof B, Perseke M, Podsiadlowski L, von Reumont B, Schierwater B, Schlegel M, Schrödl M, Simon S, Stadler PF, Stöger I, Struck TH.

Mol Phylogenet Evol. 2013 Nov;69(2):352-64. doi: 10.1016/j.ympev.2013.05.002. Epub 2013 May 16.

PMID:
23684911
38.

Expression pattern of Piwi-like genes in adult Myzostoma cirriferum (Annelida).

Weigert A, Helm C, Hausen H, Zakrzewski AC, Bleidorn C.

Dev Genes Evol. 2013 Sep;223(5):329-34. doi: 10.1007/s00427-013-0444-x. Epub 2013 Apr 23.

PMID:
23609434
39.

Temporal plasticity in annelid development--ontogeny of Phyllodoce groenlandica (Phyllodocidae, Annelida) reveals heterochronous patterns.

Helm C, Schemel S, Bleidorn C.

J Exp Zool B Mol Dev Evol. 2013 May;320(3):166-78. doi: 10.1002/jez.b.22492. Epub 2013 Feb 25.

PMID:
23440901
40.

Myoanatomy of Myzostoma cirriferum (Annelida, Myzostomida): implications for the evolution of the myzostomid body plan.

Helm C, Weigert A, Mayer G, Bleidorn C.

J Morphol. 2013 Apr;274(4):456-66. doi: 10.1002/jmor.20107. Epub 2012 Dec 20.

PMID:
23280634
41.

Analysis of phylogenetic signal in protostomial intron patterns using Mutual Information.

Hill N, Leow A, Bleidorn C, Groth D, Tiedemann R, Selbig J, Hartmann S.

Theory Biosci. 2013 Jun;132(2):93-104. doi: 10.1007/s12064-012-0173-0. Epub 2012 Dec 18.

PMID:
23248024
42.

Deep sequencing of small RNAs confirms an annelid affinity of Myzostomida.

Helm C, Bernhart SH, Höner zu Siederdissen C, Nickel B, Bleidorn C.

Mol Phylogenet Evol. 2012 Jul;64(1):198-203.

PMID:
22724136
43.

Opsins in onychophora (velvet worms) suggest a single origin and subsequent diversification of visual pigments in arthropods.

Hering L, Henze MJ, Kohler M, Kelber A, Bleidorn C, Leschke M, Nickel B, Meyer M, Kircher M, Sunnucks P, Mayer G.

Mol Biol Evol. 2012 Nov;29(11):3451-8. doi: 10.1093/molbev/mss148. Epub 2012 Jun 7.

PMID:
22683812
44.

Exploiting gene families for phylogenomic analysis of myzostomid transcriptome data.

Hartmann S, Helm C, Nickel B, Meyer M, Struck TH, Tiedemann R, Selbig J, Bleidorn C.

PLoS One. 2012;7(1):e29843. doi: 10.1371/journal.pone.0029843. Epub 2012 Jan 20.

45.

Phylogenomic analyses unravel annelid evolution.

Struck TH, Paul C, Hill N, Hartmann S, Hösel C, Kube M, Lieb B, Meyer A, Tiedemann R, Purschke G, Bleidorn C.

Nature. 2011 Mar 3;471(7336):95-8. doi: 10.1038/nature09864.

PMID:
21368831
46.
47.

Transmission of lungworms of harbour porpoises and harbour seals: molecular tools determine potential vertebrate intermediate hosts.

Lehnert K, von Samson-Himmelstjerna G, Schaudien D, Bleidorn C, Wohlsein P, Siebert U.

Int J Parasitol. 2010 Jun;40(7):845-53. doi: 10.1016/j.ijpara.2009.12.008. Epub 2010 Feb 1.

PMID:
20123100
48.

Conflicting signal within a single gene confounds syllid phylogeny (Syllidae, Annelida).

Aguado MT, Bleidorn C.

Mol Phylogenet Evol. 2010 Jun;55(3):1128-38. doi: 10.1016/j.ympev.2010.01.012. Epub 2010 Jan 15. Erratum in: Mol Phylogenet Evol. 2010 Nov;57(2):960.

PMID:
20079860
49.

On the phylogenetic position of Myzostomida: can 77 genes get it wrong?

Bleidorn C, Podsiadlowski L, Zhong M, Eeckhaut I, Hartmann S, Halanych KM, Tiedemann R.

BMC Evol Biol. 2009 Jul 1;9:150. doi: 10.1186/1471-2148-9-150.

50.

Occurrence of Can-SINEs and intron sequence evolution supports robust phylogeny of pinniped carnivores and their terrestrial relatives.

Schröder C, Bleidorn C, Hartmann S, Tiedemann R.

Gene. 2009 Dec 15;448(2):221-6. doi: 10.1016/j.gene.2009.06.012. Epub 2009 Jun 27.

PMID:
19563867

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