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Items: 1 to 50 of 112

1.

Infection by the castrating parasitic nematode Sphaerularia bombi changes gene expression in Bombus terrestris bumblebee queens.

Colgan TJ, Carolan JC, Sumner S, Blaxter ML, Brown MJF.

Insect Mol Biol. 2019 Sep 30. doi: 10.1111/imb.12618. [Epub ahead of print]

PMID:
31566835
2.

Chromosome-Wide Evolution and Sex Determination in the Three-Sexed Nematode Auanema rhodensis.

Tandonnet S, Koutsovoulos GD, Adams S, Cloarec D, Parihar M, Blaxter ML, Pires-daSilva A.

G3 (Bethesda). 2019 Apr 9;9(4):1211-1230. doi: 10.1534/g3.119.0011.

3.

High genetic diversity in the Dirofilaria repens species complex revealed by mitochondrial genomes of feline microfilaria samples from Narathiwat, Thailand.

Yilmaz E, Wongkamchai S, Ramünke S, Koutsovoulos GD, Blaxter ML, Poppert S, Schaper R, von Samson-Himmelstjerna G, Krücken J.

Transbound Emerg Dis. 2019 Jan;66(1):389-399. doi: 10.1111/tbed.13033. Epub 2018 Oct 19.

PMID:
30281949
4.

Sex- and Gamete-Specific Patterns of X Chromosome Segregation in a Trioecious Nematode.

Tandonnet S, Farrell MC, Koutsovoulos GD, Blaxter ML, Parihar M, Sadler PL, Shakes DC, Pires-daSilva A.

Curr Biol. 2018 Jan 8;28(1):93-99.e3. doi: 10.1016/j.cub.2017.11.037. Epub 2017 Dec 21.

5.

Genome comparisons indicate recent transfer of wRi-like Wolbachia between sister species Drosophila suzukii and D. subpulchrella.

Conner WR, Blaxter ML, Anfora G, Ometto L, Rota-Stabelli O, Turelli M.

Ecol Evol. 2017 Oct 8;7(22):9391-9404. doi: 10.1002/ece3.3449. eCollection 2017 Nov.

6.

Comparative Genomics of Apomictic Root-Knot Nematodes: Hybridization, Ploidy, and Dynamic Genome Change.

Szitenberg A, Salazar-Jaramillo L, Blok VC, Laetsch DR, Joseph S, Williamson VM, Blaxter ML, Lunt DH.

Genome Biol Evol. 2017 Oct 1;9(10):2844-2861. doi: 10.1093/gbe/evx201.

7.

KinFin: Software for Taxon-Aware Analysis of Clustered Protein Sequences.

Laetsch DR, Blaxter ML.

G3 (Bethesda). 2017 Oct 5;7(10):3349-3357. doi: 10.1534/g3.117.300233.

8.

Genetic Drift, Not Life History or RNAi, Determine Long-Term Evolution of Transposable Elements.

Szitenberg A, Cha S, Opperman CH, Bird DM, Blaxter ML, Lunt DH.

Genome Biol Evol. 2016 Oct 5;8(9):2964-2978.

9.

Para-allopatry in hybridizing fire-bellied toads (Bombina bombina and B. variegata): Inference from transcriptome-wide coalescence analyses.

Nürnberger B, Lohse K, Fijarczyk A, Szymura JM, Blaxter ML.

Evolution. 2016 Aug;70(8):1803-18. doi: 10.1111/evo.12978. Epub 2016 Jul 8. Erratum in: Evolution. 2016 Oct;70(10 ):2429.

10.

Stage-specific Proteomes from Onchocerca ochengi, Sister Species of the Human River Blindness Parasite, Uncover Adaptations to a Nodular Lifestyle.

Armstrong SD, Xia D, Bah GS, Krishna R, Ngangyung HF, LaCourse EJ, McSorley HJ, Kengne-Ouafo JA, Chounna-Ndongmo PW, Wanji S, Enyong PA, Taylor DW, Blaxter ML, Wastling JM, Tanya VN, Makepeace BL.

Mol Cell Proteomics. 2016 Aug;15(8):2554-75. doi: 10.1074/mcp.M115.055640. Epub 2016 May 25.

11.

Formin Is Associated with Left-Right Asymmetry in the Pond Snail and the Frog.

Davison A, McDowell GS, Holden JM, Johnson HF, Koutsovoulos GD, Liu MM, Hulpiau P, Van Roy F, Wade CM, Banerjee R, Yang F, Chiba S, Davey JW, Jackson DJ, Levin M, Blaxter ML.

Curr Biol. 2016 Mar 7;26(5):654-60. doi: 10.1016/j.cub.2015.12.071. Epub 2016 Feb 25.

12.

ReproPhylo: An Environment for Reproducible Phylogenomics.

Szitenberg A, John M, Blaxter ML, Lunt DH.

PLoS Comput Biol. 2015 Sep 3;11(9):e1004447. doi: 10.1371/journal.pcbi.1004447. eCollection 2015 Sep.

13.

The genomes of two key bumblebee species with primitive eusocial organization.

Sadd BM, Barribeau SM, Bloch G, de Graaf DC, Dearden P, Elsik CG, Gadau J, Grimmelikhuijzen CJ, Hasselmann M, Lozier JD, Robertson HM, Smagghe G, Stolle E, Van Vaerenbergh M, Waterhouse RM, Bornberg-Bauer E, Klasberg S, Bennett AK, Câmara F, Guigó R, Hoff K, Mariotti M, Munoz-Torres M, Murphy T, Santesmasses D, Amdam GV, Beckers M, Beye M, Biewer M, Bitondi MM, Blaxter ML, Bourke AF, Brown MJ, Buechel SD, Cameron R, Cappelle K, Carolan JC, Christiaens O, Ciborowski KL, Clarke DF, Colgan TJ, Collins DH, Cridge AG, Dalmay T, Dreier S, du Plessis L, Duncan E, Erler S, Evans J, Falcon T, Flores K, Freitas FC, Fuchikawa T, Gempe T, Hartfelder K, Hauser F, Helbing S, Humann FC, Irvine F, Jermiin LS, Johnson CE, Johnson RM, Jones AK, Kadowaki T, Kidner JH, Koch V, Köhler A, Kraus FB, Lattorff HM, Leask M, Lockett GA, Mallon EB, Antonio DS, Marxer M, Meeus I, Moritz RF, Nair A, Näpflin K, Nissen I, Niu J, Nunes FM, Oakeshott JG, Osborne A, Otte M, Pinheiro DG, Rossié N, Rueppell O, Santos CG, Schmid-Hempel R, Schmitt BD, Schulte C, Simões ZL, Soares MP, Swevers L, Winnebeck EC, Wolschin F, Yu N, Zdobnov EM, Aqrawi PK, Blankenburg KP, Coyle M, Francisco L, Hernandez AG, Holder M, Hudson ME, Jackson L, Jayaseelan J, Joshi V, Kovar C, Lee SL, Mata R, Mathew T, Newsham IF, Ngo R, Okwuonu G, Pham C, Pu LL, Saada N, Santibanez J, Simmons D, Thornton R, Venkat A, Walden KK, Wu YQ, Debyser G, Devreese B, Asher C, Blommaert J, Chipman AD, Chittka L, Fouks B, Liu J, O'Neill MP, Sumner S, Puiu D, Qu J, Salzberg SL, Scherer SE, Muzny DM, Richards S, Robinson GE, Gibbs RA, Schmid-Hempel P, Worley KC.

Genome Biol. 2015 Apr 24;16:76. doi: 10.1186/s13059-015-0623-3.

14.

A conserved set of maternal genes? Insights from a molluscan transcriptome.

Liu MM, Davey JW, Jackson DJ, Blaxter ML, Davison A.

Int J Dev Biol. 2014;58(6-8):501-11. doi: 10.1387/ijdb.140121ad.

15.

Ancient and novel small RNA pathways compensate for the loss of piRNAs in multiple independent nematode lineages.

Sarkies P, Selkirk ME, Jones JT, Blok V, Boothby T, Goldstein B, Hanelt B, Ardila-Garcia A, Fast NM, Schiffer PM, Kraus C, Taylor MJ, Koutsovoulos G, Blaxter ML, Miska EA.

PLoS Biol. 2015 Feb 10;13(2):e1002061. doi: 10.1371/journal.pbio.1002061. eCollection 2015 Feb.

16.

The evolution of tyrosine-recombinase elements in Nematoda.

Szitenberg A, Koutsovoulos G, Blaxter ML, Lunt DH.

PLoS One. 2014 Sep 8;9(9):e106630. doi: 10.1371/journal.pone.0106630. eCollection 2014.

17.

Comparative analysis of the secretome from a model filarial nematode (Litomosoides sigmodontis) reveals maximal diversity in gravid female parasites.

Armstrong SD, Babayan SA, Lhermitte-Vallarino N, Gray N, Xia D, Martin C, Kumar S, Taylor DW, Blaxter ML, Wastling JM, Makepeace BL.

Mol Cell Proteomics. 2014 Oct;13(10):2527-44. doi: 10.1074/mcp.M114.038539. Epub 2014 Jun 23.

18.

The complex hybrid origins of the root knot nematodes revealed through comparative genomics.

Lunt DH, Kumar S, Koutsovoulos G, Blaxter ML.

PeerJ. 2014 May 6;2:e356. doi: 10.7717/peerj.356. eCollection 2014.

19.

The genome of Romanomermis culicivorax: revealing fundamental changes in the core developmental genetic toolkit in Nematoda.

Schiffer PH, Kroiher M, Kraus C, Koutsovoulos GD, Kumar S, Camps JI, Nsah NA, Stappert D, Morris K, Heger P, Altmüller J, Frommolt P, Nürnberg P, Thomas WK, Blaxter ML, Schierenberg E.

BMC Genomics. 2013 Dec 27;14:923. doi: 10.1186/1471-2164-14-923.

20.

Fine mapping of the pond snail left-right asymmetry (chirality) locus using RAD-Seq and fibre-FISH.

Liu MM, Davey JW, Banerjee R, Han J, Yang F, Aboobaker A, Blaxter ML, Davison A.

PLoS One. 2013 Aug 12;8(8):e71067. doi: 10.1371/journal.pone.0071067. eCollection 2013.

21.

The transcriptomic basis of oviposition behaviour in the parasitoid wasp Nasonia vitripennis.

Pannebakker BA, Trivedi U, Blaxter ML, Watt R, Shuker DM.

PLoS One. 2013 Jul 19;8(7):e68608. doi: 10.1371/journal.pone.0068608. Print 2013. Erratum in: PLoS One. 2013;8(10). doi:10.1371/annotation/820ede3e-65d1-404a-9ddd-4db415ea760e. Blaxter, Mark A [corrected to Blaxter, Mark L].

22.

RAD-Seq derived markers flank the shell colour and banding loci of the Cepaea nemoralis supergene.

Richards PM, Liu MM, Lowe N, Davey JW, Blaxter ML, Davison A.

Mol Ecol. 2013 Jun;22(11):3077-89. doi: 10.1111/mec.12262. Epub 2013 Mar 15.

23.

A transcriptomic analysis of Echinococcus granulosus larval stages: implications for parasite biology and host adaptation.

Parkinson J, Wasmuth JD, Salinas G, Bizarro CV, Sanford C, Berriman M, Ferreira HB, Zaha A, Blaxter ML, Maizels RM, Fernández C.

PLoS Negl Trop Dis. 2012;6(11):e1897. doi: 10.1371/journal.pntd.0001897. Epub 2012 Nov 29. Erratum in: PLoS Negl Trop Dis. 2012 December; 6(12): 10.1371/annotation/984cd209-4e98-467c-b462-c11090e43be7.

24.

Silencing of germline-expressed genes by DNA elimination in somatic cells.

Wang J, Mitreva M, Berriman M, Thorne A, Magrini V, Koutsovoulos G, Kumar S, Blaxter ML, Davis RE.

Dev Cell. 2012 Nov 13;23(5):1072-80. doi: 10.1016/j.devcel.2012.09.020. Epub 2012 Nov 1.

25.

Special features of RAD Sequencing data: implications for genotyping.

Davey JW, Cezard T, Fuentes-Utrilla P, Eland C, Gharbi K, Blaxter ML.

Mol Ecol. 2013 Jun;22(11):3151-64. doi: 10.1111/mec.12084. Epub 2012 Oct 30.

26.

The biology of nematode- and IL4Rα-dependent murine macrophage polarization in vivo as defined by RNA-Seq and targeted lipidomics.

Thomas GD, Rückerl D, Maskrey BH, Whitfield PD, Blaxter ML, Allen JE.

Blood. 2012 Dec 13;120(25):e93-e104. doi: 10.1182/blood-2012-07-442640. Epub 2012 Oct 16.

27.

Genome-wide patterns of divergence and gene flow across a butterfly radiation.

Nadeau NJ, Martin SH, Kozak KM, Salazar C, Dasmahapatra KK, Davey JW, Baxter SW, Blaxter ML, Mallet J, Jiggins CD.

Mol Ecol. 2013 Feb;22(3):814-26. doi: 10.1111/j.1365-294X.2012.05730.x. Epub 2012 Aug 25.

PMID:
22924870
28.

Analysis of gene expression from the Wolbachia genome of a filarial nematode supports both metabolic and defensive roles within the symbiosis.

Darby AC, Armstrong SD, Bah GS, Kaur G, Hughes MA, Kay SM, Koldkjær P, Rainbow L, Radford AD, Blaxter ML, Tanya VN, Trees AJ, Cordaux R, Wastling JM, Makepeace BL.

Genome Res. 2012 Dec;22(12):2467-77. doi: 10.1101/gr.138420.112. Epub 2012 Aug 23.

29.

Characterisation of QTL-linked and genome-wide restriction site-associated DNA (RAD) markers in farmed Atlantic salmon.

Houston RD, Davey JW, Bishop SC, Lowe NR, Mota-Velasco JC, Hamilton A, Guy DR, Tinch AE, Thomson ML, Blaxter ML, Gharbi K, Bron JE, Taggart JB.

BMC Genomics. 2012 Jun 15;13:244. doi: 10.1186/1471-2164-13-244.

30.

The phylogenetics of Anguillicolidae (Nematoda: Anguillicoloidea), swimbladder parasites of eels.

Laetsch DR, Heitlinger EG, Taraschewski H, Nadler SA, Blaxter ML.

BMC Evol Biol. 2012 May 4;12:60. doi: 10.1186/1471-2148-12-60.

31.

Simultaneous genome sequencing of symbionts and their hosts.

Kumar S, Blaxter ML.

Symbiosis. 2011 Nov;55(3):119-126. Epub 2012 Feb 15.

32.

Genomic islands of divergence in hybridizing Heliconius butterflies identified by large-scale targeted sequencing.

Nadeau NJ, Whibley A, Jones RT, Davey JW, Dasmahapatra KK, Baxter SW, Quail MA, Joron M, ffrench-Constant RH, Blaxter ML, Mallet J, Jiggins CD.

Philos Trans R Soc Lond B Biol Sci. 2012 Feb 5;367(1587):343-53. doi: 10.1098/rstb.2011.0198.

33.

Polyphenism in social insects: insights from a transcriptome-wide analysis of gene expression in the life stages of the key pollinator, Bombus terrestris.

Colgan TJ, Carolan JC, Bridgett SJ, Sumner S, Blaxter ML, Brown MJ.

BMC Genomics. 2011 Dec 20;12:623. doi: 10.1186/1471-2164-12-623.

34.

Proteomic analysis of secretory products from the model gastrointestinal nematode Heligmosomoides polygyrus reveals dominance of venom allergen-like (VAL) proteins.

Hewitson JP, Harcus Y, Murray J, van Agtmaal M, Filbey KJ, Grainger JR, Bridgett S, Blaxter ML, Ashton PD, Ashford DA, Curwen RS, Wilson RA, Dowle AA, Maizels RM.

J Proteomics. 2011 Aug 24;74(9):1573-94. doi: 10.1016/j.jprot.2011.06.002. Epub 2011 Jun 29.

35.

Genome-wide genetic marker discovery and genotyping using next-generation sequencing.

Davey JW, Hohenlohe PA, Etter PD, Boone JQ, Catchen JM, Blaxter ML.

Nat Rev Genet. 2011 Jun 17;12(7):499-510. doi: 10.1038/nrg3012. Review.

PMID:
21681211
36.

Linkage mapping and comparative genomics using next-generation RAD sequencing of a non-model organism.

Baxter SW, Davey JW, Johnston JS, Shelton AM, Heckel DG, Jiggins CD, Blaxter ML.

PLoS One. 2011 Apr 26;6(4):e19315. doi: 10.1371/journal.pone.0019315.

37.

RADSeq: next-generation population genetics.

Davey JW, Blaxter ML.

Brief Funct Genomics. 2010 Dec;9(5-6):416-23. doi: 10.1093/bfgp/elq031. Erratum in: Brief Funct Genomics. 2011 Mar;10(2):108. Davey, John L [corrected to Davey, John W]; Blaxter, Mark W [corrected to Blaxter, Mark L].

38.

iPhy: an integrated phylogenetic workbench for supermatrix analyses.

Jones MO, Koutsovoulos GD, Blaxter ML.

BMC Bioinformatics. 2011 Jan 24;12:30. doi: 10.1186/1471-2105-12-30.

39.

Deep resequencing of serial sputum isolates of Mycobacterium tuberculosis during therapeutic failure due to poor compliance reveals stepwise mutation of key resistance genes on an otherwise stable genetic background.

Saunders NJ, Trivedi UH, Thomson ML, Doig C, Laurenson IF, Blaxter ML.

J Infect. 2011 Mar;62(3):212-7. doi: 10.1016/j.jinf.2011.01.003. Epub 2011 Jan 13.

PMID:
21237201
40.

Second-generation environmental sequencing unmasks marine metazoan biodiversity.

Fonseca VG, Carvalho GR, Sung W, Johnson HF, Power DM, Neill SP, Packer M, Blaxter ML, Lambshead PJ, Thomas WK, Creer S.

Nat Commun. 2010 Oct 19;1:98. doi: 10.1038/ncomms1095.

41.

Comparing de novo assemblers for 454 transcriptome data.

Kumar S, Blaxter ML.

BMC Genomics. 2010 Oct 16;11:571. doi: 10.1186/1471-2164-11-571.

42.

Ultrasequencing of the meiofaunal biosphere: practice, pitfalls and promises.

Creer S, Fonseca VG, Porazinska DL, Giblin-Davis RM, Sung W, Power DM, Packer M, Carvalho GR, Blaxter ML, Lambshead PJ, Thomas WK.

Mol Ecol. 2010 Mar;19 Suppl 1:4-20. doi: 10.1111/j.1365-294X.2009.04473.x. Review.

PMID:
20331766
43.

Analysis of the genome sequences of three Drosophila melanogaster spontaneous mutation accumulation lines.

Keightley PD, Trivedi U, Thomson M, Oliver F, Kumar S, Blaxter ML.

Genome Res. 2009 Jul;19(7):1195-201. doi: 10.1101/gr.091231.109. Epub 2009 May 13.

44.

The components of the Daphnia pulex immune system as revealed by complete genome sequencing.

McTaggart SJ, Conlon C, Colbourne JK, Blaxter ML, Little TJ.

BMC Genomics. 2009 Apr 22;10:175. doi: 10.1186/1471-2164-10-175.

45.

Duplication and divergence: the evolution of nematode globins.

Hunt PW, McNally J, Barris W, Blaxter ML.

J Nematol. 2009 Mar;41(1):35-51.

46.

A P2X receptor from the tardigrade species Hypsibius dujardini with fast kinetics and sensitivity to zinc and copper.

Bavan S, Straub VA, Blaxter ML, Ennion SJ.

BMC Evol Biol. 2009 Jan 20;9:17. doi: 10.1186/1471-2148-9-17.

47.

Transcriptome profiling of developmental and xenobiotic responses in a keystone soil animal, the oligochaete annelid Lumbricus rubellus.

Owen J, Hedley BA, Svendsen C, Wren J, Jonker MJ, Hankard PK, Lister LJ, Stürzenbaum SR, Morgan AJ, Spurgeon DJ, Blaxter ML, Kille P.

BMC Genomics. 2008 Jun 3;9:266. doi: 10.1186/1471-2164-9-266.

48.

annot8r: GO, EC and KEGG annotation of EST datasets.

Schmid R, Blaxter ML.

BMC Bioinformatics. 2008 Apr 9;9:180. doi: 10.1186/1471-2105-9-180.

49.

ButterflyBase: a platform for lepidopteran genomics.

Papanicolaou A, Gebauer-Jung S, Blaxter ML, Owen McMillan W, Jiggins CD.

Nucleic Acids Res. 2008 Jan;36(Database issue):D582-7. Epub 2007 Oct 12.

50.

Draft genome of the filarial nematode parasite Brugia malayi.

Ghedin E, Wang S, Spiro D, Caler E, Zhao Q, Crabtree J, Allen JE, Delcher AL, Guiliano DB, Miranda-Saavedra D, Angiuoli SV, Creasy T, Amedeo P, Haas B, El-Sayed NM, Wortman JR, Feldblyum T, Tallon L, Schatz M, Shumway M, Koo H, Salzberg SL, Schobel S, Pertea M, Pop M, White O, Barton GJ, Carlow CK, Crawford MJ, Daub J, Dimmic MW, Estes CF, Foster JM, Ganatra M, Gregory WF, Johnson NM, Jin J, Komuniecki R, Korf I, Kumar S, Laney S, Li BW, Li W, Lindblom TH, Lustigman S, Ma D, Maina CV, Martin DM, McCarter JP, McReynolds L, Mitreva M, Nutman TB, Parkinson J, Peregrín-Alvarez JM, Poole C, Ren Q, Saunders L, Sluder AE, Smith K, Stanke M, Unnasch TR, Ware J, Wei AD, Weil G, Williams DJ, Zhang Y, Williams SA, Fraser-Liggett C, Slatko B, Blaxter ML, Scott AL.

Science. 2007 Sep 21;317(5845):1756-60.

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