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Items: 1 to 50 of 126

1.

Metabolic Control over mTOR-Dependent Diapause-like State.

Hussein AM, Wang Y, Mathieu J, Margaretha L, Song C, Jones DC, Cavanaugh C, Miklas JW, Mahen E, Showalter MR, Ruzzo WL, Fiehn O, Ware CB, Blau CA, Ruohola-Baker H.

Dev Cell. 2020 Jan 27;52(2):236-250.e7. doi: 10.1016/j.devcel.2019.12.018.

PMID:
31991105
2.

Cognitive Control Network Homogeneity and Executive Functions in Late-Life Depression.

Respino M, Hoptman MJ, Victoria LW, Alexopoulos GS, Solomonov N, Stein AT, Coluccio M, Morimoto SS, Blau CJ, Abreu L, Burdick KE, Liston C, Gunning FM.

Biol Psychiatry Cogn Neurosci Neuroimaging. 2020 Feb;5(2):213-221. doi: 10.1016/j.bpsc.2019.10.013. Epub 2019 Nov 7.

PMID:
31901436
3.

Trajectories of violent victimization predicting PTSD and comorbidities among urban ethnic/racial minorities.

Pahl K, Williams SZ, Lee JY, Joseph A, Blau C.

J Consult Clin Psychol. 2020 Jan;88(1):39-47. doi: 10.1037/ccp0000449. Epub 2019 Oct 24.

PMID:
31647275
4.

Sharing Data from Molecular Simulations.

Abraham M, Apostolov R, Barnoud J, Bauer P, Blau C, Bonvin AMJJ, Chavent M, Chodera J, Čondić-Jurkić K, Delemotte L, Grubmüller H, Howard RJ, Jordan EJ, Lindahl E, Ollila OHS, Selent J, Smith DGA, Stansfeld PJ, Tiemann JKS, Trellet M, Woods C, Zhmurov A.

J Chem Inf Model. 2019 Oct 28;59(10):4093-4099. doi: 10.1021/acs.jcim.9b00665. Epub 2019 Oct 11.

PMID:
31525920
5.

GROmaρs: A GROMACS-Based Toolset to Analyze Density Maps Derived from Molecular Dynamics Simulations.

Briones R, Blau C, Kutzner C, de Groot BL, Aponte-Santamaría C.

Biophys J. 2019 Jan 8;116(1):4-11. doi: 10.1016/j.bpj.2018.11.3126. Epub 2018 Dec 1.

6.

The RareCyte® platform for next-generation analysis of circulating tumor cells.

Kaldjian EP, Ramirez AB, Sun Y, Campton DE, Werbin JL, Varshavskaya P, Quarre S, George T, Madan A, Blau CA, Seubert R.

Cytometry A. 2018 Dec;93(12):1220-1225. doi: 10.1002/cyto.a.23619. Epub 2018 Oct 2.

7.

Using DNase Hi-C techniques to map global and local three-dimensional genome architecture at high resolution.

Ma W, Ay F, Lee C, Gulsoy G, Deng X, Cook S, Hesson J, Cavanaugh C, Ware CB, Krumm A, Shendure J, Blau CA, Disteche CM, Noble WS, Duan Z.

Methods. 2018 Jun 1;142:59-73. doi: 10.1016/j.ymeth.2018.01.014. Epub 2018 Jan 31.

8.

Practical Implementation of Failure Mode and Effects Analysis for Extracorporeal Membrane Oxygenation Activation.

Nasim F, Poterucha JT, Daniels LM, Park JG, Seelhammer TG, Bohman JK, Friedrich TP, Blau CL, Elmer JL, Schears GJ.

Am J Med Qual. 2018 Sep/Oct;33(5):523-529. doi: 10.1177/1062860618754703. Epub 2018 Jan 24.

PMID:
29366330
9.

A machine learning approach to integrate big data for precision medicine in acute myeloid leukemia.

Lee SI, Celik S, Logsdon BA, Lundberg SM, Martins TJ, Oehler VG, Estey EH, Miller CP, Chien S, Dai J, Saxena A, Blau CA, Becker PS.

Nat Commun. 2018 Jan 3;9(1):42. doi: 10.1038/s41467-017-02465-5.

10.

Comprehensive statistical inference of the clonal structure of cancer from multiple biopsies.

Liu J, Halloran JT, Bilmes JA, Daza RM, Lee C, Mahen EM, Prunkard D, Song C, Blau S, Dorschner MO, Gadi VK, Shendure J, Blau CA, Noble WS.

Sci Rep. 2017 Dec 5;7(1):16943. doi: 10.1038/s41598-017-16813-4.

11.

Inference of Calmodulin's Ca2+-Dependent Free Energy Landscapes via Gaussian Mixture Model Validation.

Westerlund AM, Harpole TJ, Blau C, Delemotte L.

J Chem Theory Comput. 2018 Jan 9;14(1):63-71. doi: 10.1021/acs.jctc.7b00346. Epub 2017 Dec 6.

PMID:
29144736
12.

Separability of neural responses to standardised mechanical stimulation of limbs.

Brunton E, Blau CW, Nazarpour K.

Sci Rep. 2017 Sep 11;7(1):11138. doi: 10.1038/s41598-017-11349-z.

13.

Human Cord Blood and Bone Marrow CD34+ Cells Generate Macrophages That Support Erythroid Islands.

Belay E, Hayes BJ, Blau CA, Torok-Storb B.

PLoS One. 2017 Jan 30;12(1):e0171096. doi: 10.1371/journal.pone.0171096. eCollection 2017.

14.

Comparison of 2 Commercially Available Next-Generation Sequencing Platforms in Oncology.

Kuderer NM, Burton KA, Blau S, Rose AL, Parker S, Lyman GH, Blau CA.

JAMA Oncol. 2017 Jul 1;3(7):996-998. doi: 10.1001/jamaoncol.2016.4983. No abstract available.

15.

Mapping 3D genome architecture through in situ DNase Hi-C.

Ramani V, Cusanovich DA, Hause RJ, Ma W, Qiu R, Deng X, Blau CA, Disteche CM, Noble WS, Shendure J, Duan Z.

Nat Protoc. 2016 Nov;11(11):2104-21. doi: 10.1038/nprot.2016.126. Epub 2016 Sep 29.

16.

Novel Applications of Modified Ultrafiltration and Autologous Priming Techniques to Reduce Blood Product Exposure on ECMO.

Neal JR, Blau CL, Cornelius AM, Pike RB, Dearani JA, Mora BN.

J Extra Corpor Technol. 2016 Mar;48(1):23-6.

17.

A Distributed Network for Intensive Longitudinal Monitoring in Metastatic Triple-Negative Breast Cancer.

Blau CA, Ramirez AB, Blau S, Pritchard CC, Dorschner MO, Schmechel SC, Martins TJ, Mahen EM, Burton KA, Komashko VM, Radenbaugh AJ, Dougherty K, Thomas A, Miller CP, Annis J, Fromm JR, Song C, Chang E, Howard K, Austin S, Schmidt RA, Linenberger ML, Becker PS, Senecal FM, Mecham BH, Lee SI, Madan A, Ronen R, Dutkowski J, Heimfeld S, Wood BL, Stilwell JL, Kaldjian EP, Haussler D, Zhu J.

J Natl Compr Canc Netw. 2016 Jan;14(1):8-17.

18.

The metabolome regulates the epigenetic landscape during naive-to-primed human embryonic stem cell transition.

Sperber H, Mathieu J, Wang Y, Ferreccio A, Hesson J, Xu Z, Fischer KA, Devi A, Detraux D, Gu H, Battle SL, Showalter M, Valensisi C, Bielas JH, Ericson NG, Margaretha L, Robitaille AM, Margineantu D, Fiehn O, Hockenbery D, Blau CA, Raftery D, Margolin AA, Hawkins RD, Moon RT, Ware CB, Ruohola-Baker H.

Nat Cell Biol. 2015 Dec;17(12):1523-35. doi: 10.1038/ncb3264. Epub 2015 Nov 16.

19.

Bipartite structure of the inactive mouse X chromosome.

Deng X, Ma W, Ramani V, Hill A, Yang F, Ay F, Berletch JB, Blau CA, Shendure J, Duan Z, Noble WS, Disteche CM.

Genome Biol. 2015 Aug 7;16:152. doi: 10.1186/s13059-015-0728-8.

20.

Dynamic contact network between ribosomal subunits enables rapid large-scale rotation during spontaneous translocation.

Bock LV, Blau C, Vaiana AC, Grubmüller H.

Nucleic Acids Res. 2015 Aug 18;43(14):6747-60. doi: 10.1093/nar/gkv649. Epub 2015 Jun 24.

21.

The Proteomic Landscape of Triple-Negative Breast Cancer.

Lawrence RT, Perez EM, Hernández D, Miller CP, Haas KM, Irie HY, Lee SI, Blau CA, Villén J.

Cell Rep. 2015 May 12;11(6):990. doi: 10.1016/j.celrep.2015.04.059. Epub 2015 May 12. No abstract available.

22.

High-recovery visual identification and single-cell retrieval of circulating tumor cells for genomic analysis using a dual-technology platform integrated with automated immunofluorescence staining.

Campton DE, Ramirez AB, Nordberg JJ, Drovetto N, Clein AC, Varshavskaya P, Friemel BH, Quarre S, Breman A, Dorschner M, Blau S, Blau CA, Sabath DE, Stilwell JL, Kaldjian EP.

BMC Cancer. 2015 May 6;15:360. doi: 10.1186/s12885-015-1383-x.

23.

The proteomic landscape of triple-negative breast cancer.

Lawrence RT, Perez EM, Hernández D, Miller CP, Haas KM, Irie HY, Lee SI, Blau CA, Villén J.

Cell Rep. 2015 Apr 28;11(4):630-44. doi: 10.1016/j.celrep.2015.03.050. Epub 2015 Apr 16. Erratum in: Cell Rep. 2015 May 12;11(6):990.

24.

Sparse expression bases in cancer reveal tumor drivers.

Logsdon BA, Gentles AJ, Miller CP, Blau CA, Becker PS, Lee SI.

Nucleic Acids Res. 2015 Feb 18;43(3):1332-44. doi: 10.1093/nar/gku1290. Epub 2015 Jan 12.

25.
26.

Fine-scale chromatin interaction maps reveal the cis-regulatory landscape of human lincRNA genes.

Ma W, Ay F, Lee C, Gulsoy G, Deng X, Cook S, Hesson J, Cavanaugh C, Ware CB, Krumm A, Shendure J, Blau CA, Disteche CM, Noble WS, Duan Z.

Nat Methods. 2015 Jan;12(1):71-8. doi: 10.1038/nmeth.3205. Epub 2014 Dec 1.

27.

A hyperactive Mpl-based cell growth switch drives macrophage-associated erythropoiesis through an erythroid-megakaryocytic precursor.

Belay E, Miller CP, Kortum AN, Torok-Storb B, Blau CA, Emery DW.

Blood. 2015 Feb 5;125(6):1025-33. doi: 10.1182/blood-2014-02-555318. Epub 2014 Oct 24.

28.

Inferring clonal composition from multiple sections of a breast cancer.

Zare H, Wang J, Hu A, Weber K, Smith J, Nickerson D, Song C, Witten D, Blau CA, Noble WS.

PLoS Comput Biol. 2014 Jul 10;10(7):e1003703. doi: 10.1371/journal.pcbi.1003703. eCollection 2014 Jul.

29.

JAK2 expression is associated with tumor-infiltrating lymphocytes and improved breast cancer outcomes: implications for evaluating JAK2 inhibitors.

Miller CP, Thorpe JD, Kortum AN, Coy CM, Cheng WY, Ou Yang TH, Anastassiou D, Beatty JD, Urban ND, Blau CA.

Cancer Immunol Res. 2014 Apr;2(4):301-6. doi: 10.1158/2326-6066.CIR-13-0189. Epub 2014 Jan 15.

30.

Derivation of naive human embryonic stem cells.

Ware CB, Nelson AM, Mecham B, Hesson J, Zhou W, Jonlin EC, Jimenez-Caliani AJ, Deng X, Cavanaugh C, Cook S, Tesar PJ, Okada J, Margaretha L, Sperber H, Choi M, Blau CA, Treuting PM, Hawkins RD, Cirulli V, Ruohola-Baker H.

Proc Natl Acad Sci U S A. 2014 Mar 25;111(12):4484-9. doi: 10.1073/pnas.1319738111. Epub 2014 Mar 12.

31.

Energy barriers and driving forces in tRNA translocation through the ribosome.

Bock LV, Blau C, Schröder GF, Davydov II, Fischer N, Stark H, Rodnina MV, Vaiana AC, Grubmüller H.

Nat Struct Mol Biol. 2013 Dec;20(12):1390-6. doi: 10.1038/nsmb.2690. Epub 2013 Nov 3.

PMID:
24186064
32.

MDMA 'ecstasy' increases cerebral cortical perfusion determined by bolus-tracking arterial spin labelling (btASL) MRI.

Rouine J, Gobbo OL, Campbell M, Gigliucci V, Ogden I, McHugh Smith K, Duffy P, Behan B, Byrne D, Kelly ME, Blau CW, Kerskens CM, Harkin A.

Br J Pharmacol. 2013 Jul;169(5):974-87. doi: 10.1111/bph.12178.

33.

Can we deconstruct cancer, one patient at a time?

Blau CA, Liakopoulou E.

Trends Genet. 2013 Jan;29(1):6-10. doi: 10.1016/j.tig.2012.09.004. Epub 2012 Oct 23.

35.

Targeted suppression of claudin-5 decreases cerebral oedema and improves cognitive outcome following traumatic brain injury.

Campbell M, Hanrahan F, Gobbo OL, Kelly ME, Kiang AS, Humphries MM, Nguyen AT, Ozaki E, Keaney J, Blau CW, Kerskens CM, Cahalan SD, Callanan JJ, Wallace E, Grant GA, Doherty CP, Humphries P.

Nat Commun. 2012 May 22;3:849. doi: 10.1038/ncomms1852.

PMID:
22617289
36.

The fatty acid amide hydrolase inhibitor URB597 exerts anti-inflammatory effects in hippocampus of aged rats and restores an age-related deficit in long-term potentiation.

Murphy N, Cowley TR, Blau CW, Dempsey CN, Noonan J, Gowran A, Tanveer R, Olango WM, Finn DP, Campbell VA, Lynch MA.

J Neuroinflammation. 2012 Apr 26;9:79. doi: 10.1186/1742-2094-9-79.

37.

Can intensive longitudinal monitoring of individuals advance cancer research?

Blau CA.

Oncologist. 2012;17(5):587-9. doi: 10.1634/theoncologist.2012-0122. Epub 2012 Apr 20. No abstract available.

38.

HIF1α induced switch from bivalent to exclusively glycolytic metabolism during ESC-to-EpiSC/hESC transition.

Zhou W, Choi M, Margineantu D, Margaretha L, Hesson J, Cavanaugh C, Blau CA, Horwitz MS, Hockenbery D, Ware C, Ruohola-Baker H.

EMBO J. 2012 May 2;31(9):2103-16. doi: 10.1038/emboj.2012.71. Epub 2012 Mar 23.

39.

Combination of Sleeping Beauty transposition and chemically induced dimerization selection for robust production of engineered cells.

Kacherovsky N, Harkey MA, Blau CA, Giachelli CM, Pun SH.

Nucleic Acids Res. 2012 Jun;40(11):e85. doi: 10.1093/nar/gks213. Epub 2012 Mar 8.

40.

Evaluating surface erythropoietin receptor in multiple myeloma.

Miller CP, Rattray K, Zhang Y, Wood BL, Burwick N, Chien S, Bensinger WI, Blau CA, Becker PS.

Leukemia. 2012 Aug;26(8):1883-6. doi: 10.1038/leu.2012.58. Epub 2012 Mar 1. No abstract available.

PMID:
22377897
41.

The structure and function of chromatin and chromosomes.

Noble WS, Blau CA, Dekker J, Duan ZJ, Mao Y.

Pac Symp Biocomput. 2012:434-40. No abstract available.

42.

The age-related deficit in LTP is associated with changes in perfusion and blood-brain barrier permeability.

Blau CW, Cowley TR, O'Sullivan J, Grehan B, Browne TC, Kelly L, Birch A, Murphy N, Kelly AM, Kerskens CM, Lynch MA.

Neurobiol Aging. 2012 May;33(5):1005.e23-35. doi: 10.1016/j.neurobiolaging.2011.09.035. Epub 2011 Nov 8.

PMID:
22071124
43.

Corrigendum to "Long-term Regulation of Genetically Modified Primary Hematopoietic Cells in Dogs".

Okazuka K, Beard BC, Emery DW, Schwarzwaelder K, Spector MR, Sale GE, von Kalle C, Torok-Storb B, Kiem HP, Blau CA.

Mol Ther. 2011 Nov;19(11):2102. doi: 10.1038/mt.2011.180. Epub 2016 Dec 6. No abstract available.

44.

HIF induces human embryonic stem cell markers in cancer cells.

Mathieu J, Zhang Z, Zhou W, Wang AJ, Heddleston JM, Pinna CM, Hubaud A, Stadler B, Choi M, Bar M, Tewari M, Liu A, Vessella R, Rostomily R, Born D, Horwitz M, Ware C, Blau CA, Cleary MA, Rich JN, Ruohola-Baker H.

Cancer Res. 2011 Jul 1;71(13):4640-52. doi: 10.1158/0008-5472.CAN-10-3320. Epub 2011 Jun 28.

46.

Long-term regulation of genetically modified primary hematopoietic cells in dogs.

Okazuka K, Beard BC, Emery DW, Schwarzwaelder K, Spector MR, Sale GE, von Kalle C, Torok-Storb B, Kiem HP, Blau CA.

Mol Ther. 2011 Jul;19(7):1287-94. doi: 10.1038/mt.2011.8. Epub 2011 Feb 15. Erratum in: Mol Ther. 2011 Nov;19(11):2102. Torok-Storb, Beverly [added].

47.
48.

A three-dimensional model of the yeast genome.

Duan Z, Andronescu M, Schutz K, McIlwain S, Kim YJ, Lee C, Shendure J, Fields S, Blau CA, Noble WS.

Nature. 2010 May 20;465(7296):363-7. doi: 10.1038/nature08973. Epub 2010 May 2.

49.

Rosiglitazone attenuates the age-related changes in astrocytosis and the deficit in LTP.

Cowley TR, O'Sullivan J, Blau C, Deighan BF, Jones R, Kerskens C, Richardson JC, Virley D, Upton N, Lynch MA.

Neurobiol Aging. 2012 Jan;33(1):162-75. doi: 10.1016/j.neurobiolaging.2010.02.002. Epub 2010 Apr 10.

PMID:
20382448
50.

Propofol allows precise quantitative arterial spin labelling functional magnetic resonance imaging in the rat.

Griffin KM, Blau CW, Kelly ME, O'Herlihy C, O'Connell PR, Jones JF, Kerskens CM.

Neuroimage. 2010 Jul 15;51(4):1395-404. doi: 10.1016/j.neuroimage.2010.03.024. Epub 2010 Mar 19.

PMID:
20304075

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