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Items: 1 to 50 of 231

1.

Saffron (Crocus sativus) is an autotriploid that evolved in Attica (Greece) from wild Crocus cartwrightianus.

Nemati Z, Harpke D, Gemicioglu A, Kerndorff H, Blattner FR.

Mol Phylogenet Evol. 2019 Jul;136:14-20. doi: 10.1016/j.ympev.2019.03.022. Epub 2019 Apr 1.

2.

SSR-seq: Genotyping of microsatellites using next-generation sequencing reveals higher level of polymorphism as compared to traditional fragment size scoring.

Šarhanová P, Pfanzelt S, Brandt R, Himmelbach A, Blattner FR.

Ecol Evol. 2018 Oct 25;8(22):10817-10833. doi: 10.1002/ece3.4533. eCollection 2018 Nov.

3.

Enhancing the Translational Capacity of E. coli by Resolving the Codon Bias.

Lipinszki Z, Vernyik V, Farago N, Sari T, Puskas LG, Blattner FR, Posfai G, Gyorfy Z.

ACS Synth Biol. 2018 Nov 16;7(11):2656-2664. doi: 10.1021/acssynbio.8b00332. Epub 2018 Nov 2.

PMID:
30351909
4.

Phylogeny of the saffron-crocus species group, Crocus series Crocus (Iridaceae).

Nemati Z, Blattner FR, Kerndorff H, Erol O, Harpke D.

Mol Phylogenet Evol. 2018 Oct;127:891-897. doi: 10.1016/j.ympev.2018.06.036. Epub 2018 Jun 21.

PMID:
29936028
5.

Elucidation of the origin of 'agriocrithon' based on domestication genes questions the hypothesis that Tibet is one of the centers of barley domestication.

Pourkheirandish M, Kanamori H, Wu J, Sakuma S, Blattner FR, Komatsuda T.

Plant J. 2018 May;94(3):525-534. doi: 10.1111/tpj.13876. Epub 2018 Apr 6.

6.

Molecular phylogeny and divergence times of Astragalus section Hymenostegis: An analysis of a rapidly diversifying species group in Fabaceae.

Bagheri A, Maassoumi AA, Rahiminejad MR, Brassac J, Blattner FR.

Sci Rep. 2017 Oct 25;7(1):14033. doi: 10.1038/s41598-017-14614-3.

7.

Dated tribe-wide whole chloroplast genome phylogeny indicates recurrent hybridizations within Triticeae.

Bernhardt N, Brassac J, Kilian B, Blattner FR.

BMC Evol Biol. 2017 Jun 16;17(1):141. doi: 10.1186/s12862-017-0989-9.

8.

Development of microsatellite markers and assembly of the plastid genome in Cistanthe longiscapa (Montiaceae) based on low-coverage whole genome sequencing.

Stoll A, Harpke D, Schütte C, Stefanczyk N, Brandt R, Blattner FR, Quandt D.

PLoS One. 2017 Jun 2;12(6):e0178402. doi: 10.1371/journal.pone.0178402. eCollection 2017.

9.

Multiple horizontal transfers of nuclear ribosomal genes between phylogenetically distinct grass lineages.

Mahelka V, Krak K, Kopecký D, Fehrer J, Šafář J, Bartoš J, Hobza R, Blavet N, Blattner FR.

Proc Natl Acad Sci U S A. 2017 Feb 14;114(7):1726-1731. doi: 10.1073/pnas.1613375114. Epub 2017 Jan 30.

10.

Molecular Phylogeny and Morphological Analysis Support a New Species and New Synonymy in Iranian Astragalus (Leguminosae).

Bagheri A, Maassoumi AA, Rahiminejad MR, Blattner FR.

PLoS One. 2016 Mar 9;11(3):e0149726. doi: 10.1371/journal.pone.0149726. eCollection 2016.

11.

Indispensability of Horizontally Transferred Genes and Its Impact on Bacterial Genome Streamlining.

Karcagi I, Draskovits G, Umenhoffer K, Fekete G, Kovács K, Méhi O, Balikó G, Szappanos B, Györfy Z, Fehér T, Bogos B, Blattner FR, Pál C, Pósfai G, Papp B.

Mol Biol Evol. 2016 May;33(5):1257-69. doi: 10.1093/molbev/msw009. Epub 2016 Jan 14.

12.
13.

Oligocene niche shift, Miocene diversification - cold tolerance and accelerated speciation rates in the St. John's Worts (Hypericum, Hypericaceae).

Nürk NM, Uribe-Convers S, Gehrke B, Tank DC, Blattner FR.

BMC Evol Biol. 2015 May 6;15:80. doi: 10.1186/s12862-015-0359-4.

14.

Engineered ribosomal RNA operon copy-number variants of E. coli reveal the evolutionary trade-offs shaping rRNA operon number.

Gyorfy Z, Draskovits G, Vernyik V, Blattner FF, Gaal T, Posfai G.

Nucleic Acids Res. 2015 Feb 18;43(3):1783-94. doi: 10.1093/nar/gkv040. Epub 2015 Jan 23.

15.

Repair of Site-Specific DNA Double-Strand Breaks in Barley Occurs via Diverse Pathways Primarily Involving the Sister Chromatid.

Vu GT, Cao HX, Watanabe K, Hensel G, Blattner FR, Kumlehn J, Schubert I.

Plant Cell. 2014 May;26(5):2156-2167. Epub 2014 May 29.

16.

Evolutionary history of wild barley (Hordeum vulgare subsp. spontaneum) analyzed using multilocus sequence data and paleodistribution modeling.

Jakob SS, Rödder D, Engler JO, Shaaf S, Ozkan H, Blattner FR, Kilian B.

Genome Biol Evol. 2014 Mar;6(3):685-702. doi: 10.1093/gbe/evu047.

17.

The influence of different registration positions on condyle displacement in symptomatic patients.

Linsen SS, Blattner F, Stratmann U.

Oral Surg Oral Med Oral Pathol Oral Radiol. 2014 Mar;117(3):312-8. doi: 10.1016/j.oooo.2013.11.498. Epub 2013 Dec 7.

PMID:
24528791
18.

Secretory expression of biologically active human Herpes virus interleukin-10 analogues in Escherichia coli via a modified Sec-dependent transporter construct.

Förster S, Brandt M, Mottok DS, Zschüttig A, Zimmermann K, Blattner FR, Gunzer F, Pöhlmann C.

BMC Biotechnol. 2013 Oct 5;13:82. doi: 10.1186/1472-6750-13-82.

19.

Barley whole exome capture: a tool for genomic research in the genus Hordeum and beyond.

Mascher M, Richmond TA, Gerhardt DJ, Himmelbach A, Clissold L, Sampath D, Ayling S, Steuernagel B, Pfeifer M, D'Ascenzo M, Akhunov ED, Hedley PE, Gonzales AM, Morrell PL, Kilian B, Blattner FR, Scholz U, Mayer KF, Flavell AJ, Muehlbauer GJ, Waugh R, Jeddeloh JA, Stein N.

Plant J. 2013 Nov;76(3):494-505. doi: 10.1111/tpj.12294. Epub 2013 Aug 24.

20.

B chromosomes of rye are highly conserved and accompanied the development of early agriculture.

Marques A, Banaei-Moghaddam AM, Klemme S, Blattner FR, Niwa K, Guerra M, Houben A.

Ann Bot. 2013 Aug;112(3):527-34. doi: 10.1093/aob/mct121. Epub 2013 Jun 5.

21.

Phylogeny of Crocus (Iridaceae) based on one chloroplast and two nuclear loci: ancient hybridization and chromosome number evolution.

Harpke D, Meng S, Rutten T, Kerndorff H, Blattner FR.

Mol Phylogenet Evol. 2013 Mar;66(3):617-27. doi: 10.1016/j.ympev.2012.10.007. Epub 2012 Oct 30.

PMID:
23123733
22.

Molecular phylogenetics and morphological evolution of St. John's wort (Hypericum; Hypericaceae).

Nürk NM, Madriñán S, Carine MA, Chase MW, Blattner FR.

Mol Phylogenet Evol. 2013 Jan;66(1):1-16. doi: 10.1016/j.ympev.2012.08.022. Epub 2012 Sep 8.

PMID:
23058779
23.

A putative role for amino acid permeases in sink-source communication of barley tissues uncovered by RNA-seq.

Kohl S, Hollmann J, Blattner FR, Radchuk V, Andersch F, Steuernagel B, Schmutzer T, Scholz U, Krupinska K, Weber H, Weschke W.

BMC Plant Biol. 2012 Aug 30;12:154. doi: 10.1186/1471-2229-12-154.

24.

Selfish supernumerary chromosome reveals its origin as a mosaic of host genome and organellar sequences.

Martis MM, Klemme S, Banaei-Moghaddam AM, Blattner FR, Macas J, Schmutzer T, Scholz U, Gundlach H, Wicker T, Šimková H, Novák P, Neumann P, Kubaláková M, Bauer E, Haseneyer G, Fuchs J, Doležel J, Stein N, Mayer KF, Houben A.

Proc Natl Acad Sci U S A. 2012 Aug 14;109(33):13343-6. doi: 10.1073/pnas.1204237109. Epub 2012 Jul 30.

25.

Progenitor-derivative relationships of Hordeum polyploids (Poaceae, Triticeae) inferred from sequences of TOPO6, a nuclear low-copy gene region.

Brassac J, Jakob SS, Blattner FR.

PLoS One. 2012;7(3):e33808. doi: 10.1371/journal.pone.0033808. Epub 2012 Mar 30.

26.

Periplasmic delivery of biologically active human interleukin-10 in Escherichia coli via a sec-dependent signal peptide.

Pöhlmann C, Brandt M, Mottok DS, Zschüttig A, Campbell JW, Blattner FR, Frisch D, Gunzer F.

J Mol Microbiol Biotechnol. 2012;22(1):1-9. doi: 10.1159/000336043. Epub 2012 Feb 21.

PMID:
22353729
27.

Low-mutation-rate, reduced-genome Escherichia coli: an improved host for faithful maintenance of engineered genetic constructs.

Csörgo B, Fehér T, Tímár E, Blattner FR, Pósfai G.

Microb Cell Fact. 2012 Jan 20;11:11. doi: 10.1186/1475-2859-11-11.

28.

New aspects of the molecular evolution of legumains, Asn-specific cysteine proteinases.

Shutov AD, Blattner FR, Kakhovskaya IA, Müntz K.

J Plant Physiol. 2012 Feb 15;169(3):319-21. doi: 10.1016/j.jplph.2011.11.005. Epub 2011 Dec 22.

PMID:
22196948
29.

Bacteriophage recombineering in the lytic state using the lambda red recombinases.

Fehér T, Karcagi I, Blattner FR, Pósfai G.

Microb Biotechnol. 2012 Jul;5(4):466-76. doi: 10.1111/j.1751-7915.2011.00292.x. Epub 2011 Sep 13.

30.

AtHaspin phosphorylates histone H3 at threonine 3 during mitosis and contributes to embryonic patterning in Arabidopsis.

Ashtiyani RK, Moghaddam AM, Schubert V, Rutten T, Fuchs J, Demidov D, Blattner FR, Houben A.

Plant J. 2011 Nov;68(3):443-54. doi: 10.1111/j.1365-313X.2011.04699.x. Epub 2011 Aug 30.

31.

Genome size variation in Corchorus olitorius (Malvaceae s.l.) and its correlation with elevation and phenotypic traits.

Benor S, Fuchs J, Blattner FR.

Genome. 2011 Jul;54(7):575-85. doi: 10.1139/G11-021. Epub 2011 Jul 11.

PMID:
21745142
32.

Genome sequence of the plant-pathogenic bacterium Dickeya dadantii 3937.

Glasner JD, Yang CH, Reverchon S, Hugouvieux-Cotte-Pattat N, Condemine G, Bohin JP, Van Gijsegem F, Yang S, Franza T, Expert D, Plunkett G 3rd, San Francisco MJ, Charkowski AO, Py B, Bell K, Rauscher L, Rodriguez-Palenzuela P, Toussaint A, Holeva MC, He SY, Douet V, Boccara M, Blanco C, Toth I, Anderson BD, Biehl BS, Mau B, Flynn SM, Barras F, Lindeberg M, Birch PR, Tsuyumu S, Shi X, Hibbing M, Yap MN, Carpentier M, Dassa E, Umehara M, Kim JF, Rusch M, Soni P, Mayhew GF, Fouts DE, Gill SR, Blattner FR, Keen NT, Perna NT.

J Bacteriol. 2011 Apr;193(8):2076-7. doi: 10.1128/JB.01513-10. Epub 2011 Jan 7.

33.

Reduced evolvability of Escherichia coli MDS42, an IS-less cellular chassis for molecular and synthetic biology applications.

Umenhoffer K, Fehér T, Balikó G, Ayaydin F, Pósfai J, Blattner FR, Pósfai G.

Microb Cell Fact. 2010 May 21;9:38. doi: 10.1186/1475-2859-9-38.

34.

Population demography influences climatic niche evolution: evidence from diploid American Hordeum species (Poaceae).

Jakob SS, Heibl C, Rödder D, Blattner FR.

Mol Ecol. 2010 Apr;19(7):1423-38. doi: 10.1111/j.1365-294X.2010.04582.x.

PMID:
20456231
35.

Identification and genetic analysis of the APOSPORY locus in Hypericum perforatum L.

Schallau A, Arzenton F, Johnston AJ, Hähnel U, Koszegi D, Blattner FR, Altschmied L, Haberer G, Barcaccia G, Bäumlein H.

Plant J. 2010 Jun 1;62(5):773-84. doi: 10.1111/j.1365-313X.2010.04188.x. Epub 2010 Feb 26.

36.

The evolution of the hexaploid grass Zingeriakochii (Mez) Tzvel. (2n=12) was accompanied by complex hybridization and uniparental loss of ribosomal DNA.

Kotseruba V, Pistrick K, Blattner FR, Kumke K, Weiss O, Rutten T, Fuchs J, Endo T, Nasuda S, Ghukasyan A, Houben A.

Mol Phylogenet Evol. 2010 Jul;56(1):146-55. doi: 10.1016/j.ympev.2010.01.003. Epub 2010 Jan 11.

PMID:
20060916
37.

Two extinct diploid progenitors were involved in allopolyploid formation in the Hordeum murinum (Poaceae: Triticeae) taxon complex.

Jakob SS, Blattner FR.

Mol Phylogenet Evol. 2010 May;55(2):650-9. doi: 10.1016/j.ympev.2009.10.021. Epub 2009 Oct 19.

PMID:
19850141
38.

Isolation and characterization of 11 new microsatellite markers for Macaranga (Euphorbiaceae).

Baier C, Guicking D, Prinz K, Fey-Wagner C, Wöhrmann T, Weising K, Debener T, Schie S, Blattner FR.

Mol Ecol Resour. 2009 May;9(3):1049-52. doi: 10.1111/j.1755-0998.2009.02567.x. Epub 2009 Feb 20.

PMID:
21564836
39.

Phylogeographic analyses and paleodistribution modeling indicate pleistocene in situ survival of Hordeum species (Poaceae) in southern Patagonia without genetic or spatial restriction.

Jakob SS, Martinez-Meyer E, Blattner FR.

Mol Biol Evol. 2009 Apr;26(4):907-23. doi: 10.1093/molbev/msp012. Epub 2009 Jan 23.

PMID:
19168565
40.

Metabolic engineering of a reduced-genome strain of Escherichia coli for L-threonine production.

Lee JH, Sung BH, Kim MS, Blattner FR, Yoon BH, Kim JH, Kim SC.

Microb Cell Fact. 2009 Jan 7;8:2. doi: 10.1186/1475-2859-8-2.

41.

Phylogenetic analysis of Allium subg. Melanocrommyum infers cryptic species and demands a new sectional classification.

Gurushidze M, Fritsch RM, Blattner FR.

Mol Phylogenet Evol. 2008 Dec;49(3):997-1007. doi: 10.1016/j.ympev.2008.09.003. Epub 2008 Sep 14.

PMID:
18824112
42.

The complete genome sequence of Escherichia coli DH10B: insights into the biology of a laboratory workhorse.

Durfee T, Nelson R, Baldwin S, Plunkett G 3rd, Burland V, Mau B, Petrosino JF, Qin X, Muzny DM, Ayele M, Gibbs RA, Csörgo B, Pósfai G, Weinstock GM, Blattner FR.

J Bacteriol. 2008 Apr;190(7):2597-606. doi: 10.1128/JB.01695-07. Epub 2008 Feb 1.

43.

Single nucleotide sequence analysis: a cost- and time-effective protocol for the analysis of microsatellite- and indel-rich chloroplast DNA regions.

Guicking D, Kröger-Kilian T, Weising K, Blattner FR.

Mol Ecol Resour. 2008 Jan;8(1):62-5. doi: 10.1111/j.1471-8286.2007.01883.x.

PMID:
21585719
44.

Transcription profiling of the stringent response in Escherichia coli.

Durfee T, Hansen AM, Zhi H, Blattner FR, Jin DJ.

J Bacteriol. 2008 Feb;190(3):1084-96. Epub 2007 Nov 26.

45.

Enteropathogen Resource Integration Center (ERIC): bioinformatics support for research on biodefense-relevant enterobacteria.

Glasner JD, Plunkett G 3rd, Anderson BD, Baumler DJ, Biehl BS, Burland V, Cabot EL, Darling AE, Mau B, Neeno-Eckwall EC, Pot D, Qiu Y, Rissman AI, Worzella S, Zaremba S, Fedorko J, Hampton T, Liss P, Rusch M, Shaker M, Shaull L, Shetty P, Thotakura S, Whitmore J, Blattner FR, Greene JM, Perna NT.

Nucleic Acids Res. 2008 Jan;36(Database issue):D519-23. Epub 2007 Nov 13.

46.

A new asset for pathogen informatics--the Enteropathogen Resource Integration Center (ERIC), an NIAID Bioinformatics Resource Center for Biodefense and Emerging/Re-emerging Infectious Disease.

Greene JM, Plunkett G 3rd, Burland V, Glasner J, Cabot E, Anderson B, Neeno-Eckwall E, Qiu Y, Mau B, Rusch M, Liss P, Hampton T, Pot D, Shaker M, Shaull L, Shetty P, Shi C, Whitmore J, Wong M, Zaremba S, Blattner FR, Perna NT.

Adv Exp Med Biol. 2007;603:28-42.

PMID:
17966403
47.

Evolution and function of B chromosome 45S rDNA sequences in Brachycome dichromosomatica.

Marschner S, Meister A, Blattner FR, Houben A.

Genome. 2007 Jul;50(7):638-44.

PMID:
17893741
48.

Escherichia coli K1-specific bacteriophage CUS-3 distribution and function in phase-variable capsular polysialic acid O acetylation.

King MR, Vimr RP, Steenbergen SM, Spanjaard L, Plunkett G 3rd, Blattner FR, Vimr ER.

J Bacteriol. 2007 Sep;189(17):6447-56. Epub 2007 Jun 29.

49.

Expression of two recombinant chloramphenicol acetyltransferase variants in highly reduced genome Escherichia coli strains.

Sharma SS, Campbell JW, Frisch D, Blattner FR, Harcum SW.

Biotechnol Bioeng. 2007 Dec 1;98(5):1056-70.

PMID:
17497738

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