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A Role for FACT in RNA Polymerase II Promoter-Proximal Pausing.

Tettey TT, Gao X, Shao W, Li H, Story BA, Chitsazan AD, Glaser RL, Goode ZH, Seidel CW, Conaway RC, Zeitlinger J, Blanchette M, Conaway JW.

Cell Rep. 2019 Jun 25;27(13):3770-3779.e7. doi: 10.1016/j.celrep.2019.05.099.


Mycorrhiza: Genotype Assignment using Phylogenetic Networks.

Georges-Filteau J, Hamelin RC, Blanchette M.

Bioinformatics. 2019 Jun 14. pii: btz476. doi: 10.1093/bioinformatics/btz476. [Epub ahead of print]


Double-Stranded Biotinylated Donor Enhances Homology-Directed Repair in Combination with Cas9 Monoavidin in Mammalian Cells.

Roche PJR, Gytz H, Hussain F, Cameron CJF, Paquette D, Blanchette M, Dostie J, Nagar B, Akavia UD.

CRISPR J. 2018 Dec;1:414-430. doi: 10.1089/crispr.2018.0045.


2C-ChIP: measuring chromatin immunoprecipitation signal from defined genomic regions with deep sequencing.

Wang XQD, Cameron CJF, Paquette D, Segal D, Warsaba R, Blanchette M, Dostie J.

BMC Genomics. 2019 Feb 28;20(1):162. doi: 10.1186/s12864-019-5532-5.


Rapid Genetic Code Evolution in Green Algal Mitochondrial Genomes.

Noutahi E, Calderon V, Blanchette M, El-Mabrouk N, Lang BF.

Mol Biol Evol. 2019 Apr 1;36(4):766-783. doi: 10.1093/molbev/msz016.


What would have been the impacts of wetlands on low flow support and high flow attenuation under steady state land cover conditions?

Blanchette M, Rousseau AN, Foulon É, Savary S, Poulin M.

J Environ Manage. 2019 Mar 15;234:448-457. doi: 10.1016/j.jenvman.2018.12.095. Epub 2019 Jan 11.


Simulating rewetting events in intermittent rivers and ephemeral streams: A global analysis of leached nutrients and organic matter.

Shumilova O, Zak D, Datry T, von Schiller D, Corti R, Foulquier A, Obrador B, Tockner K, Allan DC, Altermatt F, Arce MI, Arnon S, Banas D, Banegas-Medina A, Beller E, Blanchette ML, Blanco-Libreros JF, Blessing J, Boëchat IG, Boersma K, Bogan MT, Bonada N, Bond NR, Brintrup K, Bruder A, Burrows R, Cancellario T, Carlson SM, Cauvy-Fraunié S, Cid N, Danger M, de Freitas Terra B, Girolamo AM, Del Campo R, Dyer F, Elosegi A, Faye E, Febria C, Figueroa R, Four B, Gessner MO, Gnohossou P, Cerezo RG, Gomez-Gener L, Graça MAS, Guareschi S, Gücker B, Hwan JL, Kubheka S, Langhans SD, Leigh C, Little CJ, Lorenz S, Marshall J, McIntosh A, Mendoza-Lera C, Meyer EI, Miliša M, Mlambo MC, Moleón M, Negus P, Niyogi D, Papatheodoulou A, Pardo I, Paril P, Pešić V, Rodriguez-Lozano P, Rolls RJ, Sanchez-Montoya MM, Savić A, Steward A, Stubbington R, Taleb A, Vorste RV, Waltham N, Zoppini A, Zarfl C.

Glob Chang Biol. 2019 May;25(5):1591-1611. doi: 10.1111/gcb.14537. Epub 2019 Feb 25.


Structural Variation Detection by Proximity Ligation from Formalin-Fixed, Paraffin-Embedded Tumor Tissue.

Troll CJ, Putnam NH, Hartley PD, Rice B, Blanchette M, Siddiqui S, Ganbat JO, Powers MP, Ramakrishnan R, Kunder CA, Bustamante CD, Zehnder JL, Green RE, Costa HA.

J Mol Diagn. 2019 May;21(3):375-383. doi: 10.1016/j.jmoldx.2018.11.003. Epub 2018 Dec 31.


3D genome mapping and analysis methods.

Dostie J, Blanchette M.

Methods. 2018 Jun 1;142:1-2. doi: 10.1016/j.ymeth.2018.05.017. No abstract available.


An analytic approach for interpretable predictive models in high-dimensional data in the presence of interactions with exposures.

Bhatnagar SR, Yang Y, Khundrakpam B, Evans AC, Blanchette M, Bouchard L, Greenwood CMT.

Genet Epidemiol. 2018 Apr;42(3):233-249. doi: 10.1002/gepi.22112. Epub 2018 Feb 8.


The amazing brain drain.

Blanchette M, Daneman R.

J Exp Med. 2017 Dec 4;214(12):3469-3470. doi: 10.1084/jem.20172031. Epub 2017 Nov 21.


CeFra-seq reveals broad asymmetric mRNA and noncoding RNA distribution profiles in Drosophila and human cells.

Benoit Bouvrette LP, Cody NAL, Bergalet J, Lefebvre FA, Diot C, Wang X, Blanchette M, Lécuyer E.

RNA. 2018 Jan;24(1):98-113. doi: 10.1261/rna.063172.117. Epub 2017 Oct 27.


Functional 5' UTR motif discovery with LESMoN: Local Enrichment of Sequence Motifs in biological Networks.

Lavallée-Adam M, Cloutier P, Coulombe B, Blanchette M.

Nucleic Acids Res. 2017 Oct 13;45(18):10415-10427. doi: 10.1093/nar/gkx751.


CoreTracker: accurate codon reassignment prediction, applied to mitochondrial genomes.

Noutahi E, Calderon V, Blanchette M, Lang FB, El-Mabrouk N.

Bioinformatics. 2017 Nov 1;33(21):3331-3339. doi: 10.1093/bioinformatics/btx421.


Regulated Intron Removal Integrates Motivational State and Experience.

Gill J, Park Y, McGinnis JP, Perez-Sanchez C, Blanchette M, Si K.

Cell. 2017 May 18;169(5):836-848.e15. doi: 10.1016/j.cell.2017.05.006.


Aubergine Controls Germline Stem Cell Self-Renewal and Progeny Differentiation via Distinct Mechanisms.

Ma X, Zhu X, Han Y, Story B, Do T, Song X, Wang S, Zhang Y, Blanchette M, Gogol M, Hall K, Peak A, Anoja P, Xie T.

Dev Cell. 2017 Apr 24;41(2):157-169.e5. doi: 10.1016/j.devcel.2017.03.023.


A critical assessment of topologically associating domain prediction tools.

Dali R, Blanchette M.

Nucleic Acids Res. 2017 Apr 7;45(6):2994-3005. doi: 10.1093/nar/gkx145.


Sex-Specific Transcript Diversity in the Fly Head Is Established during Pupal Stages and Adulthood and Is Largely Independent of the Mating Process and the Germline.

Mohr C, Kleiner S, Blanchette M, Pyrowolakis G, Hartmann B.

Sex Dev. 2017;11(2):94-108. doi: 10.1159/000456022. Epub 2017 Mar 9.


Modulation of the splicing regulatory function of SRSF10 by a novel compound that impairs HIV-1 replication.

Shkreta L, Blanchette M, Toutant J, Wilhelm E, Bell B, Story BA, Balachandran A, Cochrane A, Cheung PK, Harrigan PR, Grierson DS, Chabot B.

Nucleic Acids Res. 2017 Apr 20;45(7):4051-4067. doi: 10.1093/nar/gkw1223.


Prediction of human miRNA target genes using computationally reconstructed ancestral mammalian sequences.

Leclercq M, Diallo AB, Blanchette M.

Nucleic Acids Res. 2017 Jan 25;45(2):556-566. doi: 10.1093/nar/gkw1085. Epub 2016 Nov 29.


Exon junction complex proteins bind nascent transcripts independently of pre-mRNA splicing in Drosophila melanogaster.

Choudhury SR, Singh AK, McLeod T, Blanchette M, Jang B, Badenhorst P, Kanhere A, Brogna S.

Elife. 2016 Nov 23;5. pii: e19881. doi: 10.7554/eLife.19881.


Slip Resistance.

Blanchette M, Spiller B.

Occup Health Saf. 2016 Nov;85(11):47-9.


Workers' characteristics associated with the type of healthcare provider first seen for occupational back pain.

Blanchette MA, Rivard M, Dionne CE, Hogg-Johnson S, Steenstra I.

BMC Musculoskelet Disord. 2016 Oct 18;17(1):428.


Association Between the Type of First Healthcare Provider and the Duration of Financial Compensation for Occupational Back Pain.

Blanchette MA, Rivard M, Dionne CE, Hogg-Johnson S, Steenstra I.

J Occup Rehabil. 2017 Sep;27(3):382-392. doi: 10.1007/s10926-016-9667-9.


Which Characteristics are Associated with the Timing of the First Healthcare Consultation, and Does the Time to Care Influence the Duration of Compensation for Occupational Back Pain?

Blanchette MA, Rivard M, Dionne CE, Steenstra I, Hogg-Johnson S.

J Occup Rehabil. 2017 Sep;27(3):359-368. doi: 10.1007/s10926-016-9665-y.


Effectiveness and Economic Evaluation of Chiropractic Care for the Treatment of Low Back Pain: A Systematic Review of Pragmatic Studies.

Blanchette MA, Stochkendahl MJ, Borges Da Silva R, Boruff J, Harrison P, Bussières A.

PLoS One. 2016 Aug 3;11(8):e0160037. doi: 10.1371/journal.pone.0160037. eCollection 2016. Review.


α,β-Dicarbonyl reduction is mediated by the Saccharomyces Old Yellow Enzyme.

van Bergen B, Cyr N, Strasser R, Blanchette M, Sheppard JD, Jardim A.

FEMS Yeast Res. 2016 Aug;16(5). pii: fow059. doi: 10.1093/femsyr/fow059. Epub 2016 Jul 10.


The measure of success.

Blanchette ML.

Science. 2016 Jul 1;353(6294):94. doi: 10.1126/science.353.6294.94. Epub 2016 Jun 30. No abstract available.


Models and algorithms for genome rearrangement with positional constraints.

Swenson KM, Simonaitis P, Blanchette M.

Algorithms Mol Biol. 2016 May 17;11:13. doi: 10.1186/s13015-016-0065-9. eCollection 2016.


Phylogenetic and Genomic Analyses Resolve the Origin of Important Plant Genes Derived from Transposable Elements.

Joly-Lopez Z, Hoen DR, Blanchette M, Bureau TE.

Mol Biol Evol. 2016 Aug;33(8):1937-56. doi: 10.1093/molbev/msw067. Epub 2016 Apr 28.


Chromosome-scale shotgun assembly using an in vitro method for long-range linkage.

Putnam NH, O'Connell BL, Stites JC, Rice BJ, Blanchette M, Calef R, Troll CJ, Fields A, Hartley PD, Sugnet CW, Haussler D, Rokhsar DS, Green RE.

Genome Res. 2016 Mar;26(3):342-50. doi: 10.1101/gr.193474.115. Epub 2016 Feb 4.


Population whole-genome bisulfite sequencing across two tissues highlights the environment as the principal source of human methylome variation.

Busche S, Shao X, Caron M, Kwan T, Allum F, Cheung WA, Ge B, Westfall S, Simon MM; Multiple Tissue Human Expression Resource, Barrett A, Bell JT, McCarthy MI, Deloukas P, Blanchette M, Bourque G, Spector TD, Lathrop M, Pastinen T, Grundberg E.

Genome Biol. 2015 Dec 23;16:290. doi: 10.1186/s13059-015-0856-1.


PAM multiplicity marks genomic target sites as inhibitory to CRISPR-Cas9 editing.

Malina A, Cameron CJF, Robert F, Blanchette M, Dostie J, Pelletier J.

Nat Commun. 2015 Dec 8;6:10124. doi: 10.1038/ncomms10124.


Conservative treatment of a rock climber with a SLAP lesion: a case report.

Blanchette MA, Pham AT, Grenier JM.

J Can Chiropr Assoc. 2015 Sep;59(3):238-44.


Chiropractors' characteristics associated with their number of workers' compensation patients.

Blanchette MA, Cassidy JD, Rivard M, Dionne CE.

J Can Chiropr Assoc. 2015 Sep;59(3):202-15.


A call for benchmarking transposable element annotation methods.

Hoen DR, Hickey G, Bourque G, Casacuberta J, Cordaux R, Feschotte C, Fiston-Lavier AS, Hua-Van A, Hubley R, Kapusta A, Lerat E, Maumus F, Pollock DD, Quesneville H, Smit A, Wheeler TJ, Bureau TE, Blanchette M.

Mob DNA. 2015 Aug 4;6:13. doi: 10.1186/s13100-015-0044-6. eCollection 2015.


Formation and maintenance of the BBB.

Blanchette M, Daneman R.

Mech Dev. 2015 Nov;138 Pt 1:8-16. doi: 10.1016/j.mod.2015.07.007. Epub 2015 Jul 26. Review.


The SMC Loader Scc2 Promotes ncRNA Biogenesis and Translational Fidelity.

Zakari M, Trimble Ross R, Peak A, Blanchette M, Seidel C, Gerton JL.

PLoS Genet. 2015 Jul 15;11(7):e1005308. doi: 10.1371/journal.pgen.1005308. eCollection 2015 Jul.


The butterfly plant arms-race escalated by gene and genome duplications.

Edger PP, Heidel-Fischer HM, Bekaert M, Rota J, Glöckner G, Platts AE, Heckel DG, Der JP, Wafula EK, Tang M, Hofberger JA, Smithson A, Hall JC, Blanchette M, Bureau TE, Wright SI, dePamphilis CW, Eric Schranz M, Barker MS, Conant GC, Wahlberg N, Vogel H, Pires JC, Wheat CW.

Proc Natl Acad Sci U S A. 2015 Jul 7;112(27):8362-6. doi: 10.1073/pnas.1503926112. Epub 2015 Jun 22.


A Function for the hnRNP A1/A2 Proteins in Transcription Elongation.

Lemieux B, Blanchette M, Monette A, Mouland AJ, Wellinger RJ, Chabot B.

PLoS One. 2015 May 26;10(5):e0126654. doi: 10.1371/journal.pone.0126654. eCollection 2015.


A low-latency, big database system and browser for storage, querying and visualization of 3D genomic data.

Butyaev A, Mavlyutov R, Blanchette M, Cudré-Mauroux P, Waldispühl J.

Nucleic Acids Res. 2015 Sep 18;43(16):e103. doi: 10.1093/nar/gkv476. Epub 2015 May 18.


The influence of footwear tread groove parameters on available friction.

Blanchette MG, Powers CM.

Appl Ergon. 2015 Sep;50:237-41. doi: 10.1016/j.apergo.2015.03.018. Epub 2015 Apr 21.


Chiropractors' characteristics associated with physician referrals: results from a survey of Canadian doctors of chiropractic.

Blanchette MA, Rivard M, Dionne CE, Cassidy JD.

J Manipulative Physiol Ther. 2015 Jul-Aug;38(6):395-406. doi: 10.1016/j.jmpt.2014.11.001. Epub 2015 May 1.


Effectiveness and economic evaluation of chiropractic care for the treatment of low back pain: a systematic review protocol.

Blanchette MA, Bussières A, Stochkendahl MJ, Boruff J, Harrison P.

Syst Rev. 2015 Mar 18;4:30. doi: 10.1186/s13643-015-0015-5.


Beyond the spine: a new clinical research priority.

Donovan J, Cassidy JD, Cancelliere C, Poulsen E, Stochkendahl MJ, Kilsgaard J, Blanchette MA, Hartvigsen J.

J Can Chiropr Assoc. 2015 Mar;59(1):6-12.


Specific dysregulation of IFNγ production by natural killer cells confers susceptibility to viral infection.

Fodil N, Langlais D, Moussa P, Boivin GA, Di Pietrantonio T, Radovanovic I, Dumaine A, Blanchette M, Schurr E, Gros P, Vidal SM.

PLoS Pathog. 2014 Dec 4;10(12):e1004511. doi: 10.1371/journal.ppat.1004511. eCollection 2014 Dec.


SR proteins control a complex network of RNA-processing events.

Bradley T, Cook ME, Blanchette M.

RNA. 2015 Jan;21(1):75-92. doi: 10.1261/rna.043893.113. Epub 2014 Nov 20.


Evidence for widespread positive and negative selection in coding and conserved noncoding regions of Capsella grandiflora.

Williamson RJ, Josephs EB, Platts AE, Hazzouri KM, Haudry A, Blanchette M, Wright SI.

PLoS Genet. 2014 Sep 25;10(9):e1004622. doi: 10.1371/journal.pgen.1004622. eCollection 2014 Sep.


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