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Items: 20


Circular RNAs are differentially expressed in prostate cancer and are potentially associated with resistance to enzalutamide.

Greene J, Baird AM, Casey O, Brady L, Blackshields G, Lim M, O'Brien O, Gray SG, McDermott R, Finn SP.

Sci Rep. 2019 Jul 24;9(1):10739. doi: 10.1038/s41598-019-47189-2.


The effect of breed and diet type on the global transcriptome of hepatic tissue in beef cattle divergent for feed efficiency.

Higgins MG, Kenny DA, Fitzsimons C, Blackshields G, Coyle S, McKenna C, McGee M, Morris DW, Waters SM.

BMC Genomics. 2019 Jun 26;20(1):525. doi: 10.1186/s12864-019-5906-8.


Blood immune transcriptome analysis of artificially fed dairy calves and naturally suckled beef calves from birth to 7 days of age.

Surlis C, Earley B, McGee M, Keogh K, Cormican P, Blackshields G, Tiernan K, Dunn A, Morrison S, Arguello A, Waters SM.

Sci Rep. 2018 Oct 18;8(1):15461. doi: 10.1038/s41598-018-33627-0.


Evaluating Established Methods for Rumen 16S rRNA Amplicon Sequencing With Mock Microbial Populations.

McGovern E, Waters SM, Blackshields G, McCabe MS.

Front Microbiol. 2018 Jun 25;9:1365. doi: 10.3389/fmicb.2018.01365. eCollection 2018.


CD10-/ALDH- cells are the sole cisplatin-resistant component of a novel ovarian cancer stem cell hierarchy.

Ffrench B, Gasch C, Hokamp K, Spillane C, Blackshields G, Mahgoub TM, Bates M, Kehoe L, Mooney A, Doyle R, Doyle B, O'Donnell D, Gleeson N, Hennessy BT, Stordal B, O'Riain C, Lambkin H, O'Toole S, O'Leary JJ, Gallagher MF.

Cell Death Dis. 2017 Oct 19;8(10):e3128. doi: 10.1038/cddis.2017.379.


Peripheral blood microRNA and VEGFA mRNA changes following electroconvulsive therapy: implications for psychotic depression.

Kolshus E, Ryan KM, Blackshields G, Smyth P, Sheils O, McLoughlin DM.

Acta Psychiatr Scand. 2017 Dec;136(6):594-606. doi: 10.1111/acps.12821. Epub 2017 Oct 4.


MyD88 is an essential component of retinoic acid-induced differentiation in human pluripotent embryonal carcinoma cells.

Sulaiman G, Cooke A, Ffrench B, Gasch C, Abdullai OA, O'Connor K, Elbaruni S, Blackshields G, Spillane C, Keegan H, McEneaney V, Knittel R, Rogers A, Jeffery IB, Doyle B, Bates M, d'Adhemar C, Lee MY, Campbell EL, Moynagh PN, Higgins DG, O'Toole S, O'Neill L, O'Leary JJ, Gallagher MF.

Cell Death Differ. 2017 Nov;24(11):1975-1986. doi: 10.1038/cdd.2017.124. Epub 2017 Sep 8.


Pluripotency markers are differentially induced by MEK inhibition in thyroid and melanoma BRAFV600E cell lines.

Dorris ER, Blackshields G, Sommerville G, Alhashemi M, Dias A, McEneaney V, Smyth P, O'Leary JJ, Sheils O.

Cancer Biol Ther. 2016 May 3;17(5):526-42. doi: 10.1080/15384047.2016.1139230. Epub 2016 Feb 1.


Interleukin-15 is associated with disease severity in viral bronchiolitis.

Leahy TR, McManus R, Doherty DG, Grealy R, Coulter T, Smyth P, Blackshields G, Sheils O, Carr MJ, Purandare N, Geary M, Hodemaekers HM, Janssen R, Bont L, Slattery D, Ryan T.

Eur Respir J. 2016 Jan;47(1):212-22. doi: 10.1183/13993003.00642-2015. Epub 2015 Nov 5.


Identifying novel hypoxia-associated markers of chemoresistance in ovarian cancer.

McEvoy LM, O'Toole SA, Spillane CD, Martin CM, Gallagher MF, Stordal B, Blackshields G, Sheils O, O'Leary JJ.

BMC Cancer. 2015 Jul 25;15:547. doi: 10.1186/s12885-015-1539-8.


Ligation of TLR7 on CD19(+) CD1d(hi) B cells suppresses allergic lung inflammation via regulatory T cells.

Khan AR, Amu S, Saunders SP, Hams E, Blackshields G, Leonard MO, Weaver CT, Sparwasser T, Sheils O, Fallon PG.

Eur J Immunol. 2015 Jun;45(6):1842-54. doi: 10.1002/eji.201445211. Epub 2015 Apr 14.


Coevolution with bacteriophages drives genome-wide host evolution and constrains the acquisition of abiotic-beneficial mutations.

Scanlan PD, Hall AR, Blackshields G, Friman VP, Davis MR Jr, Goldberg JB, Buckling A.

Mol Biol Evol. 2015 Jun;32(6):1425-35. doi: 10.1093/molbev/msv032. Epub 2015 Feb 12.


A novel serum microRNA panel to discriminate benign from malignant ovarian disease.

Langhe R, Norris L, Saadeh FA, Blackshields G, Varley R, Harrison A, Gleeson N, Spillane C, Martin C, O'Donnell DM, D'Arcy T, O'Leary J, O'Toole S.

Cancer Lett. 2015 Jan 28;356(2 Pt B):628-36. doi: 10.1016/j.canlet.2014.10.010. Epub 2014 Oct 16.


An integrated analysis of the SOX2 microRNA response program in human pluripotent and nullipotent stem cell lines.

Vencken SF, Sethupathy P, Blackshields G, Spillane C, Elbaruni S, Sheils O, Gallagher MF, O'Leary JJ.

BMC Genomics. 2014 Aug 25;15:711. doi: 10.1186/1471-2164-15-711.


Sequence embedding for fast construction of guide trees for multiple sequence alignment.

Blackshields G, Sievers F, Shi W, Wilm A, Higgins DG.

Algorithms Mol Biol. 2010 May 14;5:21. doi: 10.1186/1748-7188-5-21.


Fast embedding methods for clustering tens of thousands of sequences.

Blackshields G, Larkin M, Wallace IM, Wilm A, Higgins DG.

Comput Biol Chem. 2008 Aug;32(4):282-6. doi: 10.1016/j.compbiolchem.2008.03.005. Epub 2008 Mar 26.


Clustal W and Clustal X version 2.0.

Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG.

Bioinformatics. 2007 Nov 1;23(21):2947-8. Epub 2007 Sep 10.


Analysis and comparison of benchmarks for multiple sequence alignment.

Blackshields G, Wallace IM, Larkin M, Higgins DG.

In Silico Biol. 2006;6(4):321-39.


Mind the gaps: progress in progressive alignment.

Higgins DG, Blackshields G, Wallace IM.

Proc Natl Acad Sci U S A. 2005 Jul 26;102(30):10411-2. Epub 2005 Jul 18. No abstract available.


Multiple sequence alignments.

Wallace IM, Blackshields G, Higgins DG.

Curr Opin Struct Biol. 2005 Jun;15(3):261-6. Review.


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