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A Predictor of Early Disease Recurrence in Patients With Breast Cancer Using a Cell-free RNA and Protein Liquid Biopsy.

Lasham A, Fitzgerald SJ, Knowlton N, Robb T, Tsai P, Black MA, Williams L, Mehta SY, Harris G, Shelling AN, Blenkiron C, Print CG.

Clin Breast Cancer. 2019 Aug 22. pii: S1526-8209(19)30645-7. doi: 10.1016/j.clbc.2019.07.003. [Epub ahead of print]


Allosteric AKT Inhibitors Target Synthetic Lethal Vulnerabilities in E-Cadherin-Deficient Cells.

Bougen-Zhukov N, Nouri Y, Godwin T, Taylor M, Hakkaart C, Single A, Brew T, Permina E, Chen A, Black MA, Guilford P.

Cancers (Basel). 2019 Sep 13;11(9). pii: E1359. doi: 10.3390/cancers11091359.


Are we crying Wolff? 3D printed replicas of trabecular bone structure demonstrate higher stiffness and strength during off-axis loading.

Wood Z, Lynn L, Nguyen JT, Black MA, Patel M, Barak MM.

Bone. 2019 Oct;127:635-645. doi: 10.1016/j.bone.2019.08.002. Epub 2019 Aug 4.


Cost-related delay in filling prescriptions and health care ratings among medicare advantage recipients.

Parikh TJ, Helfrich CD, Quiñones AR, Marshall-Fabien GL, Makaroun LK, Black MA, Thielke SM.

Medicine (Baltimore). 2019 Aug;98(31):e16469. doi: 10.1097/MD.0000000000016469.


Stress, novel sex genes, and epigenetic reprogramming orchestrate socially controlled sex change.

Todd EV, Ortega-Recalde O, Liu H, Lamm MS, Rutherford KM, Cross H, Black MA, Kardailsky O, Marshall Graves JA, Hore TA, Godwin JR, Gemmell NJ.

Sci Adv. 2019 Jul 10;5(7):eaaw7006. doi: 10.1126/sciadv.aaw7006. eCollection 2019 Jul.


High-Dimensional Mass Cytometric Analysis Reveals an Increase in Effector Regulatory T Cells as a Distinguishing Feature of Colorectal Tumors.

Norton SE, Ward-Hartstonge KA, McCall JL, Leman JKH, Taylor ES, Munro F, Black MA, Fazekas de St Groth B, McGuire HM, Kemp RA.

J Immunol. 2019 Mar 15;202(6):1871-1884. doi: 10.4049/jimmunol.1801368. Epub 2019 Feb 6.


Imprinted and ancient gene: a potential mediator of cancer cell survival during tryptophan deprivation.

Tomek P, Gore SK, Potts CL, Print CG, Black MA, Hallermayr A, Kilian M, Sattlegger E, Ching LM.

Cell Commun Signal. 2018 Nov 22;16(1):88. doi: 10.1186/s12964-018-0301-7.


Tumor mutational burden is a determinant of immune-mediated survival in breast cancer.

Thomas A, Routh ED, Pullikuth A, Jin G, Su J, Chou JW, Hoadley KA, Print C, Knowlton N, Black MA, Demaria S, Wang E, Bedognetti D, Jones WD, Mehta GA, Gatza ML, Perou CM, Page DB, Triozzi P, Miller LD.

Oncoimmunology. 2018 Jul 30;7(10):e1490854. doi: 10.1080/2162402X.2018.1490854. eCollection 2018.


Fatty acid oxidation is associated with proliferation and prognosis in breast and other cancers.

Aiderus A, Black MA, Dunbier AK.

BMC Cancer. 2018 Aug 9;18(1):805. doi: 10.1186/s12885-018-4626-9.


E-cadherin-deficient cells have synthetic lethal vulnerabilities in plasma membrane organisation, dynamics and function.

Godwin TD, Kelly ST, Brew TP, Bougen-Zhukov NM, Single AB, Chen A, Stylianou CE, Harris LD, Currie SK, Telford BJ, Beetham HG, Evans GB, Black MA, Guilford PJ.

Gastric Cancer. 2019 Mar;22(2):273-286. doi: 10.1007/s10120-018-0859-1. Epub 2018 Jul 31.


Chibby is a weak regulator of β-catenin activity in gastric epithelium.

Li FQ, Chiriboga L, Black MA, Takemaru KI, Raffaniello RD.

J Cell Physiol. 2019 Feb;234(2):1871-1879. doi: 10.1002/jcp.27062. Epub 2018 Jul 31.


Frailty Syndrome, Cognition, and Dysphonia in the Elderly.

Samlan RA, Black MA, Abidov M, Mohler J, Fain M.

J Voice. 2020 Jan;34(1):160.e15-160.e23. doi: 10.1016/j.jvoice.2018.06.001. Epub 2018 Jul 25.


Continuous production process of retroviral vector for adoptive T- cell therapy.

Inwood S, Xu H, Black MA, Betenbaugh MJ, Feldman S, Shiloach J.

Biochem Eng J. 2018 Apr 15;132:145-151. doi: 10.1016/j.bej.2018.01.010. Epub 2018 Jan 11.


Germline mutations and somatic inactivation of TRIM28 in Wilms tumour.

Halliday BJ, Fukuzawa R, Markie DM, Grundy RG, Ludgate JL, Black MA, Skeen JE, Weeks RJ, Catchpoole DR, Roberts AGK, Reeve AE, Morison IM.

PLoS Genet. 2018 Jun 18;14(6):e1007399. doi: 10.1371/journal.pgen.1007399. eCollection 2018 Jun.


SB Driver Analysis: a Sleeping Beauty cancer driver analysis framework for identifying and prioritizing experimentally actionable oncogenes and tumor suppressors.

Newberg JY, Black MA, Jenkins NA, Copeland NG, Mann KM, Mann MB.

Nucleic Acids Res. 2018 Sep 19;46(16):e94. doi: 10.1093/nar/gky450.


Copy number variants implicate cardiac function and development pathways in earthquake-induced stress cardiomyopathy.

Lacey CJ, Doudney K, Bridgman PG, George PM, Mulder RT, Zarifeh JJ, Kimber B, Cadzow MJ, Black MA, Merriman TR, Lehnert K, Bickley VM, Pearson JF, Cameron VA, Kennedy MA.

Sci Rep. 2018 May 15;8(1):7548. doi: 10.1038/s41598-018-25827-5.


Prognostic roles for IL-2-producing and CD69+ T cell subsets in colorectal cancer patients.

Taylor ES, McCall JL, Shen S, Girardin A, Munro FM, Black MA, Ward-Hartstonge KA, Kemp RA.

Int J Cancer. 2018 Oct 15;143(8):2008-2016. doi: 10.1002/ijc.31598. Epub 2018 Aug 10.


Myeloid Conditioning with c-kit-Targeted CAR-T Cells Enables Donor Stem Cell Engraftment.

Arai Y, Choi U, Corsino CI, Koontz SM, Tajima M, Sweeney CL, Black MA, Feldman SA, Dinauer MC, Malech HL.

Mol Ther. 2018 May 2;26(5):1181-1197. doi: 10.1016/j.ymthe.2018.03.003. Epub 2018 Mar 10.


Accounting for Errors in Low Coverage High-Throughput Sequencing Data When Constructing Genetic Maps Using Biparental Outcrossed Populations.

Bilton TP, Schofield MR, Black MA, Chagné D, Wilcox PL, Dodds KG.

Genetics. 2018 May;209(1):65-76. doi: 10.1534/genetics.117.300627. Epub 2018 Feb 27.


Identification of sex differences in zebrafish (Danio rerio) brains during early sexual differentiation and masculinization using 17α-methyltestoterone.

Lee SLJ, Horsfield JA, Black MA, Rutherford K, Gemmell NJ.

Biol Reprod. 2018 Aug 1;99(2):446-460. doi: 10.1093/biolre/iox175.


Intravascular large B-cell lymphoma with multi-organ failure presenting as a pancreatic mass: a case with atypical presentation and definite diagnosis postmortem.

Ronny FMH, Black MA, Arbini AA.

Autops Case Rep. 2017 Dec 8;7(4):30-36. doi: 10.4322/acr.2017.034. eCollection 2017 Oct-Dec.


A novel use of 3D printing model demonstrates the effects of deteriorated trabecular bone structure on bone stiffness and strength.

Barak MM, Black MA.

J Mech Behav Biomed Mater. 2018 Feb;78:455-464. doi: 10.1016/j.jmbbm.2017.12.010. Epub 2017 Dec 7.


Inhibition of AKT signaling uncouples T cell differentiation from expansion for receptor-engineered adoptive immunotherapy.

Klebanoff CA, Crompton JG, Leonardi AJ, Yamamoto TN, Chandran SS, Eil RL, Sukumar M, Vodnala SK, Hu J, Ji Y, Clever D, Black MA, Gurusamy D, Kruhlak MJ, Jin P, Stroncek DF, Gattinoni L, Feldman SA, Restifo NP.

JCI Insight. 2017 Dec 7;2(23). pii: 95103. doi: 10.1172/jci.insight.95103.


Gene expression profiling of breast tumours from New Zealand patients.

Muthukaruppan A, Lasham A, Blenkiron C, Woad KJ, Black MA, Knowlton N, McCarthy N, Findlay MP, Print CG, Shelling AN.

N Z Med J. 2017 Oct 27;130(1464):40-56.


Histological and transcriptomic effects of 17α-methyltestosterone on zebrafish gonad development.

Lee SLJ, Horsfield JA, Black MA, Rutherford K, Fisher A, Gemmell NJ.

BMC Genomics. 2017 Jul 24;18(1):557. doi: 10.1186/s12864-017-3915-z.


Characterization of an Immunogenic Mutation in a Patient with Metastatic Triple-Negative Breast Cancer.

Assadipour Y, Zacharakis N, Crystal JS, Prickett TD, Gartner JJ, Somerville RPT, Xu H, Black MA, Jia L, Chinnasamy H, Kriley I, Lu L, Wunderlich JR, Zheng Z, Lu YC, Robbins PF, Rosenberg SA, Goff SL, Feldman SA.

Clin Cancer Res. 2017 Aug 1;23(15):4347-4353. doi: 10.1158/1078-0432.CCR-16-1423. Epub 2017 Apr 4.


Erratum to: JMJD6 is a driver of cellular proliferation and motility and a marker of poor prognosis in breast cancer.

Lee YF, Miller LD, Chan XB, Black MA, Pang B, Ong CW, Salto-Tellez M, Liu ET, Desai KV.

Breast Cancer Res. 2017 Mar 28;19(1):42. doi: 10.1186/s13058-017-0830-9. No abstract available.


Genome-wide methylation analysis identifies a core set of hypermethylated genes in CIMP-H colorectal cancer.

McInnes T, Zou D, Rao DS, Munro FM, Phillips VL, McCall JL, Black MA, Reeve AE, Guilford PJ.

BMC Cancer. 2017 Mar 28;17(1):228. doi: 10.1186/s12885-017-3226-4.


A New Role for ERα: Silencing via DNA Methylation of Basal, Stem Cell, and EMT Genes.

Ariazi EA, Taylor JC, Black MA, Nicolas E, Slifker MJ, Azzam DJ, Boyd J.

Mol Cancer Res. 2017 Feb;15(2):152-164. doi: 10.1158/1541-7786.MCR-16-0283. Epub 2016 Nov 15.


Functional impairment of infiltrating T cells in human colorectal cancer.

Taylor ES, McCall JL, Girardin A, Munro FM, Black MA, Kemp RA.

Oncoimmunology. 2016 Sep 26;5(11):e1234573. doi: 10.1080/2162402X.2016.1234573. eCollection 2016.


Transposon mutagenesis identifies genes that cooperate with mutant Pten in breast cancer progression.

Rangel R, Lee SC, Hon-Kim Ban K, Guzman-Rojas L, Mann MB, Newberg JY, Kodama T, McNoe LA, Selvanesan L, Ward JM, Rust AG, Chin KY, Black MA, Jenkins NA, Copeland NG.

Proc Natl Acad Sci U S A. 2016 Nov 29;113(48):E7749-E7758. Epub 2016 Nov 14.


Lack of direct evidence for natural selection at the candidate thrifty gene locus, PPARGC1A.

Cadzow M, Merriman TR, Boocock J, Dalbeth N, Stamp LK, Black MA, Visscher PM, Wilcox PL.

BMC Med Genet. 2016 Nov 15;17(1):80.


Multimodal Assessment of Estrogen Receptor mRNA Profiles to Quantify Estrogen Pathway Activity in Breast Tumors.

Muthukaruppan A, Lasham A, Woad KJ, Black MA, Blenkiron C, Miller LD, Harris G, McCarthy N, Findlay MP, Shelling AN, Print CG.

Clin Breast Cancer. 2017 Apr;17(2):139-153. doi: 10.1016/j.clbc.2016.09.001. Epub 2016 Sep 13.


Analyzing tumor heterogeneity and driver genes in single myeloid leukemia cells with SBCapSeq.

Mann KM, Newberg JY, Black MA, Jones DJ, Amaya-Manzanares F, Guzman-Rojas L, Kodama T, Ward JM, Rust AG, van der Weyden L, Yew CC, Waters JL, Leung ML, Rogers K, Rogers SM, McNoe LA, Selvanesan L, Navin N, Jenkins NA, Copeland NG, Mann MB.

Nat Biotechnol. 2016 Sep;34(9):962-72. doi: 10.1038/nbt.3637. Epub 2016 Aug 1.


Copy number variants in the sheep genome detected using multiple approaches.

Jenkins GM, Goddard ME, Black MA, Brauning R, Auvray B, Dodds KG, Kijas JW, Cockett N, McEwan JC.

BMC Genomics. 2016 Jun 8;17:441. doi: 10.1186/s12864-016-2754-7.


Immunogenic Subtypes of Breast Cancer Delineated by Gene Classifiers of Immune Responsiveness.

Miller LD, Chou JA, Black MA, Print C, Chifman J, Alistar A, Putti T, Zhou X, Bedognetti D, Hendrickx W, Pullikuth A, Rennhack J, Andrechek ER, Demaria S, Wang E, Marincola FM.

Cancer Immunol Res. 2016 Jul;4(7):600-10. doi: 10.1158/2326-6066.CIR-15-0149. Epub 2016 Apr 28.


Isolation and Characterization of an HLA-DPB1*04: 01-restricted MAGE-A3 T-Cell Receptor for Cancer Immunotherapy.

Yao X, Lu YC, Parker LL, Li YF, El-Gamil M, Black MA, Xu H, Feldman SA, van der Bruggen P, Rosenberg SA, Robbins PF.

J Immunother. 2016 Jun;39(5):191-201. doi: 10.1097/CJI.0000000000000123.


The Creation of a Biocontainment Unit at a Tertiary Care Hospital. The Johns Hopkins Medicine Experience.

Garibaldi BT, Kelen GD, Brower RG, Bova G, Ernst N, Reimers M, Langlotz R, Gimburg A, Iati M, Smith C, MacConnell S, James H, Lewin JJ, Trexler P, Black MA, Lynch C, Clarke W, Marzinke MA, Sokoll LJ, Carroll KC, Parish NM, Dionne K, Biddison EL, Gwon HS, Sauer L, Hill P, Newton SM, Garrett MR, Miller RG, Perl TM, Maragakis LL.

Ann Am Thorac Soc. 2016 May;13(5):600-8. doi: 10.1513/AnnalsATS.201509-587PS.


Striatal mRNA expression patterns underlying peak dose L-DOPA-induced dyskinesia in the 6-OHDA hemiparkinsonian rat.

Smith LM, Parr-Brownlie LC, Duncan EJ, Black MA, Gemmell NJ, Dearden PK, Reynolds JN.

Neuroscience. 2016 Jun 2;324:238-51. doi: 10.1016/j.neuroscience.2016.03.012. Epub 2016 Mar 8.


The power and promise of RNA-seq in ecology and evolution.

Todd EV, Black MA, Gemmell NJ.

Mol Ecol. 2016 Mar;25(6):1224-41. doi: 10.1111/mec.13526. Epub 2016 Mar 1. Review.


Large-scale transcriptome sequencing reveals novel expression patterns for key sex-related genes in a sex-changing fish.

Liu H, Lamm MS, Rutherford K, Black MA, Godwin JR, Gemmell NJ.

Biol Sex Differ. 2015 Nov 25;6:26. doi: 10.1186/s13293-015-0044-8. eCollection 2015.


Association of SLC2A9 genotype with phenotypic variability of serum urate in pre-menopausal women.

Topless RK, Flynn TJ, Cadzow M, Stamp LK, Dalbeth N, Black MA, Merriman TR.

Front Genet. 2015 Oct 14;6:313. doi: 10.3389/fgene.2015.00313. eCollection 2015.


The distribution and impact of common copy-number variation in the genome of the domesticated apple, Malus x domestica Borkh.

Boocock J, Chagné D, Merriman TR, Black MA.

BMC Genomics. 2015 Oct 23;16:848. doi: 10.1186/s12864-015-2096-x.



Black MA.

J AHIMA. 2015 Jun;86(6):34-7. No abstract available.


Hospital preparedness for Ebola virus disease: a training course in the Philippines.

Carlos C, Capistrano R, Tobora CF, delos Reyes MR, Lupisan S, Corpuz A, Aumentado C, Suy LL, Hall J, Donald J, Counahan M, Curless MS, Rhymer W, Gavin M, Lynch C, Black MA, Anduyon AD, Buttner P, Speare R.

Western Pac Surveill Response J. 2015 Jan 27;6(1):33-43. doi: 10.2471/WPSAR.2014.5.4.008. eCollection 2015 Jan-Mar.


Transposon mutagenesis identifies genetic drivers of Braf(V600E) melanoma.

Mann MB, Black MA, Jones DJ, Ward JM, Yew CC, Newberg JY, Dupuy AJ, Rust AG, Bosenberg MW, McMahon M, Print CG, Copeland NG, Jenkins NA.

Nat Genet. 2015 May;47(5):486-95. doi: 10.1038/ng.3275. Epub 2015 Apr 13.


Clinico-pathological factors influencing lymph node yield in colorectal cancer and impact on survival: analysis of New Zealand Cancer Registry data.

Ahmadi O, Stringer MD, Black MA, McCall JL.

J Surg Oncol. 2015 Mar 15;111(4):451-8. doi: 10.1002/jso.23848. Epub 2015 Feb 8.


Exploring possible DNA structures in real-time polymerase kinetics using Pacific Biosciences sequencer data.

Sawaya S, Boocock J, Black MA, Gemmell NJ.

BMC Bioinformatics. 2015 Jan 28;16:21. doi: 10.1186/s12859-014-0449-0.


Dual roles for immune metagenes in breast cancer prognosis and therapy prediction.

Alistar A, Chou JW, Nagalla S, Black MA, D'Agostino R Jr, Miller LD.

Genome Med. 2014 Oct 28;6(10):80. doi: 10.1186/s13073-014-0080-8. eCollection 2014.

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