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Items: 1 to 50 of 100

1.

A viral small terminase subunit (TerS) twin ring pac synapsis DNA packaging model is supported by fluorescent fusion proteins.

Dixit AB, Ray K, Black LW.

Virology. 2019 Oct;536:39-48. doi: 10.1016/j.virol.2019.07.021. Epub 2019 Jul 25.

PMID:
31400548
2.

Global Proteomic Profiling of Salmonella Infection by a Giant Phage.

Weintraub ST, Mohd Redzuan NH, Barton MK, Md Amin NA, Desmond MI, Adams LE, Ali B, Pardo S, Molleur D, Wu W, Newcomb WW, Osier MV, Black LW, Steven AC, Thomas JA.

J Virol. 2019 Feb 19;93(5). pii: e01833-18. doi: 10.1128/JVI.01833-18. Print 2019 Mar 1.

3.

The Odd "RB" Phage-Identification of Arabinosylation as a New Epigenetic Modification of DNA in T4-Like Phage RB69.

Thomas JA, Orwenyo J, Wang LX, Black LW.

Viruses. 2018 Jun 8;10(6). pii: E313. doi: 10.3390/v10060313.

4.

To Be or Not To Be T4: Evidence of a Complex Evolutionary Pathway of Head Structure and Assembly in Giant Salmonella Virus SPN3US.

Ali B, Desmond MI, Mallory SA, Benítez AD, Buckley LJ, Weintraub ST, Osier MV, Black LW, Thomas JA.

Front Microbiol. 2017 Nov 15;8:2251. doi: 10.3389/fmicb.2017.02251. eCollection 2017.

5.

Identification of Essential Genes in the Salmonella Phage SPN3US Reveals Novel Insights into Giant Phage Head Structure and Assembly.

Thomas JA, Benítez Quintana AD, Bosch MA, Coll De Peña A, Aguilera E, Coulibaly A, Wu W, Osier MV, Hudson AO, Weintraub ST, Black LW.

J Virol. 2016 Oct 28;90(22):10284-10298. doi: 10.1128/JVI.01492-16. Print 2016 Nov 15.

6.

Expression and purification of a single-chain Type IV restriction enzyme Eco94GmrSD and determination of its substrate preference.

He X, Hull V, Thomas JA, Fu X, Gidwani S, Gupta YK, Black LW, Xu SY.

Sci Rep. 2015 May 19;5:9747. doi: 10.1038/srep09747.

7.

Old, new, and widely true: The bacteriophage T4 DNA packaging mechanism.

Black LW.

Virology. 2015 May;479-480:650-6. doi: 10.1016/j.virol.2015.01.015. Epub 2015 Feb 27. Review.

8.

Viral nanoparticle-encapsidated enzyme and restructured DNA for cell delivery and gene expression.

Liu JL, Dixit AB, Robertson KL, Qiao E, Black LW.

Proc Natl Acad Sci U S A. 2014 Sep 16;111(37):13319-24. doi: 10.1073/pnas.1321940111. Epub 2014 Aug 26.

9.

Bacteriophage T4 capsid packaging and unpackaging of DNA and proteins.

Mullaney JM, Black LW.

Methods Mol Biol. 2014;1108:69-85. doi: 10.1007/978-1-62703-751-8_5.

PMID:
24243241
10.

The C-terminal domain of the bacteriophage T4 terminase docks on the prohead portal clip region during DNA packaging.

Dixit AB, Ray K, Thomas JA, Black LW.

Virology. 2013 Nov;446(1-2):293-302. doi: 10.1016/j.virol.2013.07.011. Epub 2013 Sep 7.

11.

Mutational analysis of the Pseudomonas aeruginosa myovirus KZ morphogenetic protease gp175.

Thomas JA, Black LW.

J Virol. 2013 Aug;87(15):8713-25. doi: 10.1128/JVI.01008-13. Epub 2013 Jun 5.

12.

Compression of the DNA substrate by a viral packaging motor is supported by removal of intercalating dye during translocation.

Dixit AB, Ray K, Black LW.

Proc Natl Acad Sci U S A. 2012 Dec 11;109(50):20419-24. doi: 10.1073/pnas.1214318109. Epub 2012 Nov 26.

13.

Extensive proteolysis of head and inner body proteins by a morphogenetic protease in the giant Pseudomonas aeruginosa phage φKZ.

Thomas JA, Weintraub ST, Wu W, Winkler DC, Cheng N, Steven AC, Black LW.

Mol Microbiol. 2012 Apr;84(2):324-39. doi: 10.1111/j.1365-2958.2012.08025.x. Epub 2012 Mar 20.

14.

Structure, assembly, and DNA packaging of the bacteriophage T4 head.

Black LW, Rao VB.

Adv Virus Res. 2012;82:119-53. doi: 10.1016/B978-0-12-394621-8.00018-2. Review.

15.

Condensed genome structure.

Black LW, Thomas JA.

Adv Exp Med Biol. 2012;726:469-87. doi: 10.1007/978-1-4614-0980-9_21. Review.

16.

Bubblegrams reveal the inner body of bacteriophage φKZ.

Wu W, Thomas JA, Cheng N, Black LW, Steven AC.

Science. 2012 Jan 13;335(6065):182. doi: 10.1126/science.1214120.

17.

Dynamics of the T4 bacteriophage DNA packasome motor: endonuclease VII resolvase release of arrested Y-DNA substrates.

Dixit A, Ray K, Lakowicz JR, Black LW.

J Biol Chem. 2011 May 27;286(21):18878-89. doi: 10.1074/jbc.M111.222828. Epub 2011 Mar 29.

18.

Structure and assembly of bacteriophage T4 head.

Rao VB, Black LW.

Virol J. 2010 Dec 3;7:356. doi: 10.1186/1743-422X-7-356. Review.

19.

DNA crunching by a viral packaging motor: Compression of a procapsid-portal stalled Y-DNA substrate.

Ray K, Sabanayagam CR, Lakowicz JR, Black LW.

Virology. 2010 Mar 15;398(2):224-32. doi: 10.1016/j.virol.2009.11.047. Epub 2010 Jan 12.

20.

Single-molecule and FRET fluorescence correlation spectroscopy analyses of phage DNA packaging: colocalization of packaged phage T4 DNA ends within the capsid.

Ray K, Ma J, Oram M, Lakowicz JR, Black LW.

J Mol Biol. 2010 Feb 5;395(5):1102-13. doi: 10.1016/j.jmb.2009.11.067. Epub 2009 Dec 4.

21.

Portal control of viral prohead expansion and DNA packaging.

Ray K, Oram M, Ma J, Black LW.

Virology. 2009 Aug 15;391(1):44-50. doi: 10.1016/j.virol.2009.05.029. Epub 2009 Jun 21.

22.

Modulation of the packaging reaction of bacteriophage t4 terminase by DNA structure.

Oram M, Sabanayagam C, Black LW.

J Mol Biol. 2008 Aug 1;381(1):61-72. doi: 10.1016/j.jmb.2008.05.074. Epub 2008 Jun 5.

23.

Restriction endonuclease inhibitor IPI* of bacteriophage T4: a novel structure for a dedicated target.

Rifat D, Wright NT, Varney KM, Weber DJ, Black LW.

J Mol Biol. 2008 Jan 18;375(3):720-34. Epub 2007 Nov 1.

24.

Viral DNA packaging studied by fluorescence correlation spectroscopy.

Sabanayagam CR, Oram M, Lakowicz JR, Black LW.

Biophys J. 2007 Aug 15;93(4):L17-9. Epub 2007 Jun 8.

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27.

Portal fusion protein constraints on function in DNA packaging of bacteriophage T4.

Baumann RG, Mullaney J, Black LW.

Mol Microbiol. 2006 Jul;61(1):16-32.

28.
29.

Cryo-EM structure of a bacteriophage T4 gp24 bypass mutant: the evolution of pentameric vertex proteins in icosahedral viruses.

Fokine A, Battisti AJ, Kostyuchenko VA, Black LW, Rossmann MG.

J Struct Biol. 2006 Jun;154(3):255-9. Epub 2006 Feb 21.

PMID:
16530424
30.

Structural and functional similarities between the capsid proteins of bacteriophages T4 and HK97 point to a common ancestry.

Fokine A, Leiman PG, Shneider MM, Ahvazi B, Boeshans KM, Steven AC, Black LW, Mesyanzhinov VV, Rossmann MG.

Proc Natl Acad Sci U S A. 2005 May 17;102(20):7163-8. Epub 2005 May 6.

31.
32.
33.

Green fluorescent protein as a probe of rotational mobility within bacteriophage T4.

Mullaney JM, Thompson RB, Gryczynski Z, Black LW.

J Virol Methods. 2000 Jul;88(1):35-40.

PMID:
10921840
34.
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36.

Substrate mutations that bypass a specific Cpn10 chaperonin requirement for protein folding.

Andreadis JD, Black LW.

J Biol Chem. 1998 Dec 18;273(51):34075-86.

37.
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39.

DNA requirements in vivo for phage T4 packaging.

Lin H, Black LW.

Virology. 1998 Mar 1;242(1):118-27.

40.
41.
42.

A powerful approach for generating and sequencing DNA deletions: sequencing from the outside in.

Ren Z, Nie W, Black LW.

Anal Biochem. 1997 Feb 1;245(1):112-4. No abstract available.

PMID:
9025979
43.

Phage display of intact domains at high copy number: a system based on SOC, the small outer capsid protein of bacteriophage T4.

Ren ZJ, Lewis GK, Wingfield PT, Locke EG, Steven AC, Black LW.

Protein Sci. 1996 Sep;5(9):1833-43.

44.
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46.

Protection from proteolysis using a T4::T7-RNAP phage expression-packaging-processing system.

Hong YR, Mullaney JM, Black LW.

Gene. 1995 Aug 30;162(1):5-11.

PMID:
7557416
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