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Items: 22


Gene Expression Analysis by Arylsulfatase Assays in the Green Alga Chlamydomonas reinhardtii.

Blaby IK, Blaby-Haas CE.

Methods Mol Biol. 2018;1755:149-161. doi: 10.1007/978-1-4939-7724-6_11.


Deciphering the Translation Initiation Factor 5A Modification Pathway in Halophilic Archaea.

Prunetti L, Graf M, Blaby IK, Peil L, Makkay AM, Starosta AL, Papke RT, Oshima T, Wilson DN, de Crécy-Lagard V.

Archaea. 2016 Dec 8;2016:7316725. doi: 10.1155/2016/7316725. eCollection 2016.


Deep Learning in Label-free Cell Classification.

Chen CL, Mahjoubfar A, Tai LC, Blaby IK, Huang A, Niazi KR, Jalali B.

Sci Rep. 2016 Mar 15;6:21471. doi: 10.1038/srep21471.


Genome-wide analysis on Chlamydomonas reinhardtii reveals the impact of hydrogen peroxide on protein stress responses and overlap with other stress transcriptomes.

Blaby IK, Blaby-Haas CE, Pérez-Pérez ME, Schmollinger S, Fitz-Gibbon S, Lemaire SD, Merchant SS.

Plant J. 2015 Dec;84(5):974-988. doi: 10.1111/tpj.13053.


High-Resolution Profiling of a Synchronized Diurnal Transcriptome from Chlamydomonas reinhardtii Reveals Continuous Cell and Metabolic Differentiation.

Zones JM, Blaby IK, Merchant SS, Umen JG.

Plant Cell. 2015 Oct;27(10):2743-69. doi: 10.1105/tpc.15.00498. Epub 2015 Oct 2.


Activation of Autophagy by Metals in Chlamydomonas reinhardtii.

Pérez-Martín M, Blaby-Haas CE, Pérez-Pérez ME, Andrés-Garrido A, Blaby IK, Merchant SS, Crespo JL.

Eukaryot Cell. 2015 Sep;14(9):964-73. doi: 10.1128/EC.00081-15. Epub 2015 Jul 10.


Exploiting algal NADPH oxidase for biophotovoltaic energy.

Anderson A, Laohavisit A, Blaby IK, Bombelli P, Howe CJ, Merchant SS, Davies JM, Smith AG.

Plant Biotechnol J. 2016 Jan;14(1):22-8. doi: 10.1111/pbi.12332. Epub 2015 Jan 29.


The Chlamydomonas genome project: a decade on.

Blaby IK, Blaby-Haas CE, Tourasse N, Hom EF, Lopez D, Aksoy M, Grossman A, Umen J, Dutcher S, Porter M, King S, Witman GB, Stanke M, Harris EH, Goodstein D, Grimwood J, Schmutz J, Vallon O, Merchant SS, Prochnik S.

Trends Plant Sci. 2014 Oct;19(10):672-80. doi: 10.1016/j.tplants.2014.05.008. Epub 2014 Jun 17. Review.


Nitrogen-Sparing Mechanisms in Chlamydomonas Affect the Transcriptome, the Proteome, and Photosynthetic Metabolism.

Schmollinger S, Mühlhaus T, Boyle NR, Blaby IK, Casero D, Mettler T, Moseley JL, Kropat J, Sommer F, Strenkert D, Hemme D, Pellegrini M, Grossman AR, Stitt M, Schroda M, Merchant SS.

Plant Cell. 2014 Apr;26(4):1410-1435. Epub 2014 Apr 18.


Systems-level analysis of nitrogen starvation-induced modifications of carbon metabolism in a Chlamydomonas reinhardtii starchless mutant.

Blaby IK, Glaesener AG, Mettler T, Fitz-Gibbon ST, Gallaher SD, Liu B, Boyle NR, Kropat J, Stitt M, Johnson S, Benning C, Pellegrini M, Casero D, Merchant SS.

Plant Cell. 2013 Nov;25(11):4305-23. doi: 10.1105/tpc.113.117580. Epub 2013 Nov 26.


Quinolinate salvage and insights for targeting NAD biosynthesis in group A streptococci.

Sorci L, Blaby IK, Rodionova IA, De Ingeniis J, Tkachenko S, de Crécy-Lagard V, Osterman AL.

J Bacteriol. 2013 Feb;195(4):726-32. doi: 10.1128/JB.02002-12. Epub 2012 Nov 30.


Three acyltransferases and nitrogen-responsive regulator are implicated in nitrogen starvation-induced triacylglycerol accumulation in Chlamydomonas.

Boyle NR, Page MD, Liu B, Blaby IK, Casero D, Kropat J, Cokus SJ, Hong-Hermesdorf A, Shaw J, Karpowicz SJ, Gallaher SD, Johnson S, Benning C, Pellegrini M, Grossman A, Merchant SS.

J Biol Chem. 2012 May 4;287(19):15811-25. doi: 10.1074/jbc.M111.334052. Epub 2012 Mar 8.


The archaeal COG1901/DUF358 SPOUT-methyltransferase members, together with pseudouridine synthase Pus10, catalyze the formation of 1-methylpseudouridine at position 54 of tRNA.

Chatterjee K, Blaby IK, Thiaville PC, Majumder M, Grosjean H, Yuan YA, Gupta R, de Crécy-Lagard V.

RNA. 2012 Mar;18(3):421-33. doi: 10.1261/rna.030841.111. Epub 2012 Jan 24.


Experimental evolution of a facultative thermophile from a mesophilic ancestor.

Blaby IK, Lyons BJ, Wroclawska-Hughes E, Phillips GC, Pyle TP, Chamberlin SG, Benner SA, Lyons TJ, Crécy-Lagard Vd, Crécy Ed.

Appl Environ Microbiol. 2012 Jan;78(1):144-55. doi: 10.1128/AEM.05773-11. Epub 2011 Oct 21.


Synergistic use of plant-prokaryote comparative genomics for functional annotations.

Gerdes S, El Yacoubi B, Bailly M, Blaby IK, Blaby-Haas CE, Jeanguenin L, Lara-Núñez A, Pribat A, Waller JC, Wilke A, Overbeek R, Hanson AD, de Crécy-Lagard V.

BMC Genomics. 2011 Jun 15;12 Suppl 1:S2. doi: 10.1186/1471-2164-12-S1-S2.


Pseudouridine formation in archaeal RNAs: The case of Haloferax volcanii.

Blaby IK, Majumder M, Chatterjee K, Jana S, Grosjean H, de Crécy-Lagard V, Gupta R.

RNA. 2011 Jul;17(7):1367-80. doi: 10.1261/rna.2712811. Epub 2011 May 31.


A 5-formyltetrahydrofolate cycloligase paralog from all domains of life: comparative genomic and experimental evidence for a cryptic role in thiamin metabolism.

Pribat A, Blaby IK, Lara-Núñez A, Jeanguenin L, Fouquet R, Frelin O, Gregory JF 3rd, Philmus B, Begley TP, de Crécy-Lagard V, Hanson AD.

Funct Integr Genomics. 2011 Sep;11(3):467-78. doi: 10.1007/s10142-011-0224-5. Epub 2011 May 3.


Towards a systems approach in the genetic analysis of archaea: Accelerating mutant construction and phenotypic analysis in Haloferax volcanii.

Blaby IK, Phillips G, Blaby-Haas CE, Gulig KS, El Yacoubi B, de Crécy-Lagard V.

Archaea. 2010 Dec 23;2010:426239. doi: 10.1155/2010/426239. Erratum in: Archaea. 2011;2011:867406.


A role for tetrahydrofolates in the metabolism of iron-sulfur clusters in all domains of life.

Waller JC, Alvarez S, Naponelli V, Lara-Nuñez A, Blaby IK, Da Silva V, Ziemak MJ, Vickers TJ, Beverley SM, Edison AS, Rocca JR, Gregory JF 3rd, de Crécy-Lagard V, Hanson AD.

Proc Natl Acad Sci U S A. 2010 Jun 8;107(23):10412-7. doi: 10.1073/pnas.0911586107. Epub 2010 May 20.


FolX and FolM are essential for tetrahydromonapterin synthesis in Escherichia coli and Pseudomonas aeruginosa.

Pribat A, Blaby IK, Lara-Núñez A, Gregory JF 3rd, de Crécy-Lagard V, Hanson AD.

J Bacteriol. 2010 Jan;192(2):475-82. doi: 10.1128/JB.01198-09. Epub 2009 Nov 6.


A Gateway platform for functional genomics in Haloferax volcanii: deletion of three tRNA modification genes.

El Yacoubi B, Phillips G, Blaby IK, Haas CE, Cruz Y, Greenberg J, de Crécy-Lagard V.

Archaea. 2009 Feb 12;2(4):211-9.


The role of FIS in the Rcd checkpoint and stable maintenance of plasmid ColE1.

Blaby IK, Summers DK.

Microbiology. 2009 Aug;155(Pt 8):2676-82. doi: 10.1099/mic.0.029777-0. Epub 2009 May 14.


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