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Items: 19

1.

A deep learning genome-mining strategy for biosynthetic gene cluster prediction.

Hannigan GD, Prihoda D, Palicka A, Soukup J, Klempir O, Rampula L, Durcak J, Wurst M, Kotowski J, Chang D, Wang R, Piizzi G, Temesi G, Hazuda DJ, Woelk CH, Bitton DA.

Nucleic Acids Res. 2019 Oct 10;47(18):e110. doi: 10.1093/nar/gkz654.

2.

Fitness Landscape of the Fission Yeast Genome.

Grech L, Jeffares DC, Sadée CY, Rodríguez-López M, Bitton DA, Hoti M, Biagosch C, Aravani D, Speekenbrink M, Illingworth CJR, Schiffer PH, Pidoux AL, Tong P, Tallada VA, Allshire R, Levin HL, Bähler J.

Mol Biol Evol. 2019 Aug 1;36(8):1612-1623. doi: 10.1093/molbev/msz113.

3.

Long noncoding RNA repertoire and targeting by nuclear exosome, cytoplasmic exonuclease, and RNAi in fission yeast.

Atkinson SR, Marguerat S, Bitton DA, Rodríguez-López M, Rallis C, Lemay JF, Cotobal C, Malecki M, Smialowski P, Mata J, Korber P, Bachand F, Bähler J.

RNA. 2018 Sep;24(9):1195-1213. doi: 10.1261/rna.065524.118. Epub 2018 Jun 18.

4.

Functional and regulatory profiling of energy metabolism in fission yeast.

Malecki M, Bitton DA, Rodríguez-López M, Rallis C, Calavia NG, Smith GC, Bähler J.

Genome Biol. 2016 Nov 25;17(1):240.

5.

AnGeLi: A Tool for the Analysis of Gene Lists from Fission Yeast.

Bitton DA, Schubert F, Dey S, Okoniewski M, Smith GC, Khadayate S, Pancaldi V, Wood V, Bähler J.

Front Genet. 2015 Nov 16;6:330. doi: 10.3389/fgene.2015.00330. eCollection 2015.

6.

Widespread exon skipping triggers degradation by nuclear RNA surveillance in fission yeast.

Bitton DA, Atkinson SR, Rallis C, Smith GC, Ellis DA, Chen YY, Malecki M, Codlin S, Lemay JF, Cotobal C, Bachand F, Marguerat S, Mata J, Bähler J.

Genome Res. 2015 Jun;25(6):884-96. doi: 10.1101/gr.185371.114. Epub 2015 Apr 16.

7.

The genomic and phenotypic diversity of Schizosaccharomyces pombe.

Jeffares DC, Rallis C, Rieux A, Speed D, Převorovský M, Mourier T, Marsellach FX, Iqbal Z, Lau W, Cheng TM, Pracana R, Mülleder M, Lawson JL, Chessel A, Bala S, Hellenthal G, O'Fallon B, Keane T, Simpson JT, Bischof L, Tomiczek B, Bitton DA, Sideri T, Codlin S, Hellberg JE, van Trigt L, Jeffery L, Li JJ, Atkinson S, Thodberg M, Febrer M, McLay K, Drou N, Brown W, Hayles J, Carazo Salas RE, Ralser M, Maniatis N, Balding DJ, Balloux F, Durbin R, Bähler J.

Nat Genet. 2015 Mar;47(3):235-41. doi: 10.1038/ng.3215. Epub 2015 Feb 9.

8.

Identification of new players in cell division, DNA damage response, and morphogenesis through construction of Schizosaccharomyces pombe deletion strains.

Chen JS, Beckley JR, McDonald NA, Ren L, Mangione M, Jang SJ, Elmore ZC, Rachfall N, Feoktistova A, Jones CM, Willet AH, Guillen R, Bitton DA, Bähler J, Jensen MA, Rhind N, Gould KL.

G3 (Bethesda). 2014 Dec 31;5(3):361-70. doi: 10.1534/g3.114.015701.

9.

Parallel profiling of fission yeast deletion mutants for proliferation and for lifespan during long-term quiescence.

Sideri T, Rallis C, Bitton DA, Lages BM, Suo F, Rodríguez-López M, Du LL, Bähler J.

G3 (Bethesda). 2014 Dec 1;5(1):145-55. doi: 10.1534/g3.114.014415.

10.

A novel histone deacetylase complex in the control of transcription and genome stability.

Zilio N, Codlin S, Vashisht AA, Bitton DA, Head SR, Wohlschlegel JA, Bähler J, Boddy MN.

Mol Cell Biol. 2014 Sep 15;34(18):3500-14. doi: 10.1128/MCB.00519-14. Epub 2014 Jul 7.

11.

LaSSO, a strategy for genome-wide mapping of intronic lariats and branch points using RNA-seq.

Bitton DA, Rallis C, Jeffares DC, Smith GC, Chen YY, Codlin S, Marguerat S, Bähler J.

Genome Res. 2014 Jul;24(7):1169-79. doi: 10.1101/gr.166819.113. Epub 2014 Apr 7.

12.

Individual letters of the RNA polymerase II CTD code govern distinct gene expression programs in fission yeast.

Schwer B, Bitton DA, Sanchez AM, Bähler J, Shuman S.

Proc Natl Acad Sci U S A. 2014 Mar 18;111(11):4185-90. doi: 10.1073/pnas.1321842111. Epub 2014 Mar 3.

13.

Structural and functional characterization of the N terminus of Schizosaccharomyces pombe Cwf10.

Livesay SB, Collier SE, Bitton DA, Bähler J, Ohi MD.

Eukaryot Cell. 2013 Nov;12(11):1472-89. doi: 10.1128/EC.00140-13. Epub 2013 Sep 6.

14.

Mzt1/Tam4, a fission yeast MOZART1 homologue, is an essential component of the γ-tubulin complex and directly interacts with GCP3(Alp6).

Dhani DK, Goult BT, George GM, Rogerson DT, Bitton DA, Miller CJ, Schwabe JW, Tanaka K.

Mol Biol Cell. 2013 Nov;24(21):3337-49. doi: 10.1091/mbc.E13-05-0253. Epub 2013 Sep 4.

15.

Programmed fluctuations in sense/antisense transcript ratios drive sexual differentiation in S. pombe.

Bitton DA, Grallert A, Scutt PJ, Yates T, Li Y, Bradford JR, Hey Y, Pepper SD, Hagan IM, Miller CJ.

Mol Syst Biol. 2011 Dec 20;7:559. doi: 10.1038/msb.2011.90.

16.

Augmented annotation of the Schizosaccharomyces pombe genome reveals additional genes required for growth and viability.

Bitton DA, Wood V, Scutt PJ, Grallert A, Yates T, Smith DL, Hagan IM, Miller CJ.

Genetics. 2011 Apr;187(4):1207-17. doi: 10.1534/genetics.110.123497. Epub 2011 Jan 26.

17.

An integrated mass-spectrometry pipeline identifies novel protein coding-regions in the human genome.

Bitton DA, Smith DL, Connolly Y, Scutt PJ, Miller CJ.

PLoS One. 2010 Jan 28;5(1):e8949. doi: 10.1371/journal.pone.0008949.

18.

Exon level integration of proteomics and microarray data.

Bitton DA, Okoniewski MJ, Connolly Y, Miller CJ.

BMC Bioinformatics. 2008 Feb 25;9:118. doi: 10.1186/1471-2105-9-118.

19.

Eight-channel iTRAQ enables comparison of the activity of six leukemogenic tyrosine kinases.

Pierce A, Unwin RD, Evans CA, Griffiths S, Carney L, Zhang L, Jaworska E, Lee CF, Blinco D, Okoniewski MJ, Miller CJ, Bitton DA, Spooncer E, Whetton AD.

Mol Cell Proteomics. 2008 May;7(5):853-63. Epub 2007 Oct 21.

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