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Items: 28


CRISPR mediated genome engineering to develop climate smart rice: Challenges and opportunities.

Biswal AK, Mangrauthia SK, Reddy MR, Yugandhar P.

Semin Cell Dev Biol. 2019 May 10. pii: S1084-9521(18)30114-9. doi: 10.1016/j.semcdb.2019.04.005. [Epub ahead of print] Review.


The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit.

Biswal AK, McConnell EW, Werth EG, Lo SF, Yu SM, Hicks LM, Jones AM.

Proteomics. 2019 May;19(9):e1800385. doi: 10.1002/pmic.201800385. Epub 2019 Apr 18.


Multitrait genome-wide association analysis of Populus trichocarpa identifies key polymorphisms controlling morphological and physiological traits.

Chhetri HB, Macaya-Sanz D, Kainer D, Biswal AK, Evans LM, Chen JG, Collins C, Hunt K, Mohanty SS, Rosenstiel T, Ryno D, Winkeler K, Yang X, Jacobson D, Mohnen D, Muchero W, Strauss SH, Tschaplinski TJ, Tuskan GA, DiFazio SP.

New Phytol. 2019 Jul;223(1):293-309. doi: 10.1111/nph.15777. Epub 2019 Apr 8.


Correction to: Multiple levers for overcoming the recalcitrance of lignocellulosic biomass.

Holwerda EK, Worthen RS, Kothari N, Lasky RC, Davison BH, Fu C, Wang ZY, Dixon RA, Biswal AK, Mohnen D, Nelson RS, Baxter HL, Mazarei M, Stewart CN Jr, Muchero W, Tuskan GA, Cai CM, Gjersing EE, Davis MF, Himmel ME, Wyman CE, Gilna P, Lynd LR.

Biotechnol Biofuels. 2019 Feb 9;12:25. doi: 10.1186/s13068-019-1363-5. eCollection 2019.


Downregulation of pectin biosynthesis gene GAUT4 leads to reduced ferulate and lignin-carbohydrate cross-linking in switchgrass.

Li M, Yoo CG, Pu Y, Biswal AK, Tolbert AK, Mohnen D, Ragauskas AJ.

Commun Biol. 2019 Jan 17;2:22. doi: 10.1038/s42003-018-0265-6. eCollection 2019.


Multiple levers for overcoming the recalcitrance of lignocellulosic biomass.

Holwerda EK, Worthen RS, Kothari N, Lasky RC, Davison BH, Fu C, Wang ZY, Dixon RA, Biswal AK, Mohnen D, Nelson RS, Baxter HL, Mazarei M, Muchero W, Tuskan GA, Cai CM, Gjersing EE, Davis MF, Himmel ME, Wyman CE, Gilna P, Lynd LR.

Biotechnol Biofuels. 2019 Jan 17;12:15. doi: 10.1186/s13068-019-1353-7. eCollection 2019. Erratum in: Biotechnol Biofuels. 2019 Feb 9;12:25.


Prolonging food shelf-life by dual actives release from multi-layered polymer particles.

Biswal AK, Saha S.

Colloids Surf B Biointerfaces. 2019 Mar 1;175:281-290. doi: 10.1016/j.colsurfb.2018.12.004. Epub 2018 Dec 4.


Functional Analysis of Cellulose Synthase CesA4 and CesA6 Genes in Switchgrass (Panicum virgatum) by Overexpression and RNAi-Mediated Gene Silencing.

Mazarei M, Baxter HL, Li M, Biswal AK, Kim K, Meng X, Pu Y, Wuddineh WA, Zhang JY, Turner GB, Sykes RW, Davis MF, Udvardi MK, Wang ZY, Mohnen D, Ragauskas AJ, Labbé N, Stewart CN Jr.

Front Plant Sci. 2018 Aug 3;9:1114. doi: 10.3389/fpls.2018.01114. eCollection 2018.


Rice with reduced stomatal density conserves water and has improved drought tolerance under future climate conditions.

Caine RS, Yin X, Sloan J, Harrison EL, Mohammed U, Fulton T, Biswal AK, Dionora J, Chater CC, Coe RA, Bandyopadhyay A, Murchie EH, Swarup R, Quick WP, Gray JE.

New Phytol. 2019 Jan;221(1):371-384. doi: 10.1111/nph.15344. Epub 2018 Jul 24.


Sugar release and growth of biofuel crops are improved by downregulation of pectin biosynthesis.

Biswal AK, Atmodjo MA, Li M, Baxter HL, Yoo CG, Pu Y, Lee YC, Mazarei M, Black IM, Zhang JY, Ramanna H, Bray AL, King ZR, LaFayette PR, Pattathil S, Donohoe BS, Mohanty SS, Ryno D, Yee K, Thompson OA, Rodriguez M Jr, Dumitrache A, Natzke J, Winkeler K, Collins C, Yang X, Tan L, Sykes RW, Gjersing EL, Ziebell A, Turner GB, Decker SR, Hahn MG, Davison BH, Udvardi MK, Mielenz JR, Davis MF, Nelson RS, Parrott WA, Ragauskas AJ, Neal Stewart C Jr, Mohnen D.

Nat Biotechnol. 2018 Mar;36(3):249-257. doi: 10.1038/nbt.4067. Epub 2018 Feb 12.


Working towards recalcitrance mechanisms: increased xylan and homogalacturonan production by overexpression of GAlactUronosylTransferase12 (GAUT12) causes increased recalcitrance and decreased growth in Populus.

Biswal AK, Atmodjo MA, Pattathil S, Amos RA, Yang X, Winkeler K, Collins C, Mohanty SS, Ryno D, Tan L, Gelineo-Albersheim I, Hunt K, Sykes RW, Turner GB, Ziebell A, Davis MF, Decker SR, Hahn MG, Mohnen D.

Biotechnol Biofuels. 2018 Jan 17;11:9. doi: 10.1186/s13068-017-1002-y. eCollection 2018.


Development and use of a switchgrass (Panicum virgatum L.) transformation pipeline by the BioEnergy Science Center to evaluate plants for reduced cell wall recalcitrance.

Nelson RS, Stewart CN Jr, Gou J, Holladay S, Gallego-Giraldo L, Flanagan A, Mann DGJ, Hisano H, Wuddineh WA, Poovaiah CR, Srivastava A, Biswal AK, Shen H, Escamilla-Treviño LL, Yang J, Hardin CF, Nandakumar R, Fu C, Zhang J, Xiao X, Percifield R, Chen F, Bennetzen JL, Udvardi M, Mazarei M, Dixon RA, Wang ZY, Tang Y, Mohnen D, Davison BH.

Biotechnol Biofuels. 2017 Dec 22;10:309. doi: 10.1186/s13068-017-0991-x. eCollection 2017.


Agronomic performance of Populus deltoides trees engineered for biofuel production.

Macaya-Sanz D, Chen JG, Kalluri UC, Muchero W, Tschaplinski TJ, Gunter LE, Simon SJ, Biswal AK, Bryan AC, Payyavula R, Xie M, Yang Y, Zhang J, Mohnen D, Tuskan GA, DiFazio SP.

Biotechnol Biofuels. 2017 Nov 30;10:253. doi: 10.1186/s13068-017-0934-6. eCollection 2017.


Comparison of four glycosyl residue composition methods for effectiveness in detecting sugars from cell walls of dicot and grass tissues.

Biswal AK, Tan L, Atmodjo MA, DeMartini J, Gelineo-Albersheim I, Hunt K, Black IM, Mohanty SS, Ryno D, Wyman CE, Mohnen D.

Biotechnol Biofuels. 2017 Jul 14;10:182. doi: 10.1186/s13068-017-0866-1. eCollection 2017.


Candidate regulators of Early Leaf Development in Maize Perturb Hormone Signalling and Secondary Cell Wall Formation When Constitutively Expressed in Rice.

Wang P, Karki S, Biswal AK, Lin HC, Dionora MJ, Rizal G, Yin X, Schuler ML, Hughes T, Fouracre JP, Jamous BA, Sedelnikova O, Lo SF, Bandyopadhyay A, Yu SM, Kelly S, Quick WP, Langdale JA.

Sci Rep. 2017 Jul 3;7(1):4535. doi: 10.1038/s41598-017-04361-w.


CRISPR-Cas9 and CRISPR-Cpf1 mediated targeting of a stomatal developmental gene EPFL9 in rice.

Yin X, Biswal AK, Dionora J, Perdigon KM, Balahadia CP, Mazumdar S, Chater C, Lin HC, Coe RA, Kretzschmar T, Gray JE, Quick PW, Bandyopadhyay A.

Plant Cell Rep. 2017 May;36(5):745-757. doi: 10.1007/s00299-017-2118-z. Epub 2017 Mar 27.


Transgenic switchgrass (Panicum virgatum L.) targeted for reduced recalcitrance to bioconversion: a 2-year comparative analysis of field-grown lines modified for target gene or genetic element expression.

Dumitrache A, Natzke J, Rodriguez M Jr, Yee KL, Thompson OA, Poovaiah CR, Shen H, Mazarei M, Baxter HL, Fu C, Wang ZY, Biswal AK, Li G, Srivastava AC, Tang Y, Stewart CN Jr, Dixon RA, Nelson RS, Mohnen D, Mielenz J, Brown SD, Davison BH.

Plant Biotechnol J. 2017 Jun;15(6):688-697. doi: 10.1111/pbi.12666. Epub 2017 Feb 20.


Downregulation of GAUT12 in Populus deltoides by RNA silencing results in reduced recalcitrance, increased growth and reduced xylan and pectin in a woody biofuel feedstock.

Biswal AK, Hao Z, Pattathil S, Yang X, Winkeler K, Collins C, Mohanty SS, Richardson EA, Gelineo-Albersheim I, Hunt K, Ryno D, Sykes RW, Turner GB, Ziebell A, Gjersing E, Lukowitz W, Davis MF, Decker SR, Hahn MG, Mohnen D.

Biotechnol Biofuels. 2015 Mar 12;8:41. doi: 10.1186/s13068-015-0218-y. eCollection 2015.


Deletion of a gene cluster encoding pectin degrading enzymes in Caldicellulosiruptor bescii reveals an important role for pectin in plant biomass recalcitrance.

Chung D, Pattathil S, Biswal AK, Hahn MG, Mohnen D, Westpheling J.

Biotechnol Biofuels. 2014 Oct 10;7(1):147. doi: 10.1186/s13068-014-0147-1. eCollection 2014.


Composite alginate hydrogel microparticulate delivery system of zidovudine hydrochloride based on counter ion induced aggregation.

Roy H, Rao PV, Panda SK, Biswal AK, Parida KR, Dash J.

Int J Appl Basic Med Res. 2014 Sep;4(Suppl 1):S31-6. doi: 10.4103/2229-516X.140728.


Aspen pectate lyase PtxtPL1-27 mobilizes matrix polysaccharides from woody tissues and improves saccharification yield.

Biswal AK, Soeno K, Gandla ML, Immerzeel P, Pattathil S, Lucenius J, Serimaa R, Hahn MG, Moritz T, Jönsson LJ, Israelsson-Nordström M, Mellerowicz EJ.

Biotechnol Biofuels. 2014 Jan 22;7(1):11. doi: 10.1186/1754-6834-7-11.


An absolute index (Ab-index) to measure a researcher's useful contributions and productivity.

Biswal AK.

PLoS One. 2013 Dec 31;8(12):e84334. doi: 10.1371/journal.pone.0084334. eCollection 2013.


Light intensity-dependent modulation of chlorophyll b biosynthesis and photosynthesis by overexpression of chlorophyllide a oxygenase in tobacco.

Biswal AK, Pattanayak GK, Pandey SS, Leelavathi S, Reddy VS, Govindjee, Tripathy BC.

Plant Physiol. 2012 May;159(1):433-49. doi: 10.1104/pp.112.195859. Epub 2012 Mar 14.


In silico analysis of microsatellites in organellar genomes of major cereals for understanding their phylogenetic relationships.

Rajendrakumar P, Biswal AK, Balachandran SM, Sundaram RM.

In Silico Biol. 2008;8(2):87-104.


Simple sequence repeats in organellar genomes of rice: frequency and distribution in genic and intergenic regions.

Rajendrakumar P, Biswal AK, Balachandran SM, Srinivasarao K, Sundaram RM.

Bioinformatics. 2007 Jan 1;23(1):1-4. Epub 2006 Oct 31.


Light-dependent regulation of chlorophyll b biosynthesis in chlorophyllide a oxygenase overexpressing tobacco plants.

Pattanayak GK, Biswal AK, Reddy VS, Tripathy BC.

Biochem Biophys Res Commun. 2005 Jan 14;326(2):466-71.


Thermoluminescence characteristics of sodium chloride salt-stressed Indian mustard seedlings.

Biswal AK, Dilnawaz F, Ramaswamy NK, David KA, Misra AN.

Luminescence. 2002 May-Jun;17(3):135-40.


Increase in the intensity of thermoluminescence Q-band during leaf ageing is due to a block in the electron transfer from Q( A) to Q( B).

Biswal AK, Dilnawaz F, David KA, Ramaswamy NK, Misra AN.

Luminescence. 2001 Sep-Oct;16(5):309-13.


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