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Separation of deamidated peptides with mixed-mode chromatography using phospholipid-functionalized monolithic stationary phases.

Liu C, Bults P, Bischoff R, Crommen J, Wang Q, Jiang Z.

J Chromatogr A. 2019 Oct 11;1603:417-421. doi: 10.1016/j.chroma.2019.05.053. Epub 2019 May 28.


Quantification of surfactant protein D (SPD) in human serum by liquid chromatography-mass spectrometry (LC-MS).

Klont F, Pouwels SD, Bults P, van de Merbel NC, Ten Hacken NHT, Horvatovich P, Bischoff R.

Talanta. 2019 Sep 1;202:507-513. doi: 10.1016/j.talanta.2019.05.028. Epub 2019 May 6.


Exact hypothesis testing for shrinkage based Gaussian Graphical Models.

Bernal V, Bischoff R, Guryev V, Grzegorczyk M, Horvatovich P.

Bioinformatics. 2019 May 11. pii: btz357. doi: 10.1093/bioinformatics/btz357. [Epub ahead of print]


Confounding Factors Affecting sRAGE as a Biomarker for Chronic Obstructive Pulmonary Disease.

Pouwels SD, Klont F, Bischoff R, Ten Hacken NHT.

Am J Respir Crit Care Med. 2019 Jul 1;200(1):114. doi: 10.1164/rccm.201902-0356LE. No abstract available.


[Current controversies in the treatment of localized prostate cancer].

Bischoff R, Chaloupka M, Westhofen T, Grimm T, Schlenker B, Weinhold P, Tilki D, Stief CG, Kretschmer A.

Urologe A. 2019 May;58(5):524-528. doi: 10.1007/s00120-019-0903-8. Review. German.


Pre- and Post-analytical Factors in Biomarker Discovery.

Klont F, Horvatovich P, Govorukhina N, Bischoff R.

Methods Mol Biol. 2019;1959:1-22. doi: 10.1007/978-1-4939-9164-8_1. Review.


Intact protein bioanalysis by liquid chromatography - High-resolution mass spectrometry.

Bults P, Spanov B, Olaleye O, van de Merbel NC, Bischoff R.

J Chromatogr B Analyt Technol Biomed Life Sci. 2019 Mar 15;1110-1111:155-167. doi: 10.1016/j.jchromb.2019.01.032. Epub 2019 Feb 1. Review. No abstract available.


[Complicated urinary tract infection: not always uncomplicated].

Bischoff R, Marcon J, Stief CG, Magistro G.

MMW Fortschr Med. 2019 Jan;161(1):44-47. doi: 10.1007/s15006-019-0067-x. Review. German. No abstract available.


Reply to Biswas: Acute and Chronic Effects of Cigarette Smoking on sRAGE.

Pouwels SD, Klont F, Kwiatkowski M, Wiersma VR, Faiz A, van den Berge M, Horvatovich P, Bischoff R, Ten Hacken NHT.

Am J Respir Crit Care Med. 2019 Mar 15;199(6):806-807. doi: 10.1164/rccm.201812-2257LE. No abstract available.


[Burning sensation during urination].

Magistro G, Marcon J, Schulz GB, Bischoff R, Stief CG.

MMW Fortschr Med. 2018 Nov;160(20):52-55. doi: 10.1007/s15006-018-1177-6. Review. German. No abstract available.


Quantification of the soluble Receptor of Advanced Glycation End-Products (sRAGE) by LC-MS after enrichment by strong cation exchange (SCX) solid-phase extraction (SPE) at the protein level.

Klont F, Joosten MR, Ten Hacken NHT, Horvatovich P, Bischoff R.

Anal Chim Acta. 2018 Dec 28;1043:45-51. doi: 10.1016/j.aca.2018.09.050. Epub 2018 Sep 29.


Bioconjugation of Supramolecular Metallacages to Integrin Ligands for Targeted Delivery of Cisplatin.

Han J, Räder AFB, Reichart F, Aikman B, Wenzel MN, Woods B, Weinmüller M, Ludwig BS, Stürup S, Groothuis GMM, Permentier HP, Bischoff R, Kessler H, Horvatovich P, Casini A.

Bioconjug Chem. 2018 Nov 21;29(11):3856-3865. doi: 10.1021/acs.bioconjchem.8b00682. Epub 2018 Nov 13.


Targeted LC-MS/MS for the evaluation of proteomics biomarkers in the blood of neonates with necrotizing enterocolitis and late-onset sepsis.

Chatziioannou AC, Wolters JC, Sarafidis K, Thomaidou A, Agakidis C, Govorukhina N, Kuivenhoven JA, Bischoff R, Theodoridis G.

Anal Bioanal Chem. 2018 Nov;410(27):7163-7175. doi: 10.1007/s00216-018-1320-3. Epub 2018 Aug 23.


Cigarette Smoking Acutely Decreases Serum Levels of the Chronic Obstructive Pulmonary Disease Biomarker sRAGE.

Pouwels SD, Klont F, Kwiatkowski M, Wiersma VR, Faiz A, van den Berge M, Horvatovich P, Bischoff R, Ten Hacken NHT.

Am J Respir Crit Care Med. 2018 Dec 1;198(11):1456-1458. doi: 10.1164/rccm.201807-1249LE. No abstract available.


LC-MS analysis of key components of the glutathione cycle in tissues and body fluids from mice with myocardial infarction.

Gil A, van der Pol A, van der Meer P, Bischoff R.

J Pharm Biomed Anal. 2018 Oct 25;160:289-296. doi: 10.1016/j.jpba.2018.08.001. Epub 2018 Aug 7.


OPLAH ablation leads to accumulation of 5-oxoproline, oxidative stress, fibrosis, and elevated fillings pressures: a murine model for heart failure with a preserved ejection fraction.

van der Pol A, Gil A, Tromp J, Silljé HHW, van Veldhuisen DJ, Voors AA, Hoendermis ES, Grote Beverborg N, Schouten EM, de Boer RA, Bischoff R, van der Meer P.

Cardiovasc Res. 2018 Dec 1;114(14):1871-1882. doi: 10.1093/cvr/cvy187.


Application of Displacement Chromatography to Online Two-Dimensional Liquid Chromatography Coupled to Tandem Mass Spectrometry Improves Peptide Separation Efficiency and Detectability for the Analysis of Complex Proteomes.

Kwiatkowski M, Krösser D, Wurlitzer M, Steffen P, Barcaru A, Krisp C, Horvatovich P, Bischoff R, Schlüter H.

Anal Chem. 2018 Aug 21;90(16):9951-9958. doi: 10.1021/acs.analchem.8b02189. Epub 2018 Aug 1.


Affimers as an Alternative to Antibodies in an Affinity LC-MS Assay for Quantification of the Soluble Receptor of Advanced Glycation End-Products (sRAGE) in Human Serum.

Klont F, Hadderingh M, Horvatovich P, Ten Hacken NHT, Bischoff R.

J Proteome Res. 2018 Aug 3;17(8):2892-2899. doi: 10.1021/acs.jproteome.8b00414. Epub 2018 Jul 26.


One- vs two-phase extraction: re-evaluation of sample preparation procedures for untargeted lipidomics in plasma samples.

Gil A, Zhang W, Wolters JC, Permentier H, Boer T, Horvatovich P, Heiner-Fokkema MR, Reijngoud DJ, Bischoff R.

Anal Bioanal Chem. 2018 Sep;410(23):5859-5870. doi: 10.1007/s00216-018-1200-x. Epub 2018 Jul 2.


Improving selectivity and sensitivity of protein quantitation by LC-HR-MS/MS: determination of somatropin in rat plasma.

Bults P, Meints M, Sonesson A, Knutsson M, Bischoff R, van de Merbel NC.

Bioanalysis. 2018 Jul 1;10(13):1009-1021. doi: 10.4155/bio-2018-0032. Epub 2018 Jun 28.


Proteomic alterations in early stage cervical cancer.

Güzel C, Govorukhina NI, Wisman GBA, Stingl C, Dekker LJM, Klip HG, Hollema H, Guryev V, Horvatovich PL, van der Zee AGJ, Bischoff R, Luider TM.

Oncotarget. 2018 Apr 6;9(26):18128-18147. doi: 10.18632/oncotarget.24773. eCollection 2018 Apr 6.


A quantitative LC-MS/MS method for insulin-like growth factor 1 in human plasma.

Bronsema KJ, Klont F, Schalk FB, Bischoff R, Kema IP, van de Merbel NC.

Clin Chem Lab Med. 2018 Oct 25;56(11):1905-1912. doi: 10.1515/cclm-2017-1042.


Developing novel methods for protein, peptide and metabolite analysis.

Bischoff R.

Bioanalysis. 2018 Apr 1;10(7):431-432. doi: 10.4155/bio-2018-3999. Epub 2018 Apr 10.


Assessment of Sample Preparation Bias in Mass Spectrometry-Based Proteomics.

Klont F, Bras L, Wolters JC, Ongay S, Bischoff R, Halmos GB, Horvatovich P.

Anal Chem. 2018 Apr 17;90(8):5405-5413. doi: 10.1021/acs.analchem.8b00600. Epub 2018 Apr 6.


A fully validated liquid chromatography-mass spectrometry method for the quantification of the soluble receptor of advanced glycation end-products (sRAGE) in serum using immunopurification in a 96-well plate format.

Klont F, Pouwels SD, Hermans J, van de Merbel NC, Horvatovich P, Ten Hacken NHT, Bischoff R.

Talanta. 2018 May 15;182:414-421. doi: 10.1016/j.talanta.2018.02.015. Epub 2018 Feb 7.


Global proofing a collaborative care telemental health intervention in Brazil.

Springer PR, Scheeren P, Bischoff RJ, Taylor NC, Cargnin D, Barros E, Falceto OG.

Fam Syst Health. 2018 Jun;36(2):175-181. doi: 10.1037/fsh0000323. Epub 2018 Feb 1.


Cleavable Crosslinkers as Tissue Fixation Reagents for Proteomic Analysis.

Ongay S, Langelaar-Makkinje M, Stoop MP, Liu N, Overkleeft H, Luider TM, Groothuis GMM, Bischoff R.

Chembiochem. 2018 Apr 4;19(7):736-743. doi: 10.1002/cbic.201700625. Epub 2018 Feb 16.


Tutorial: Correction of shifts in single-stage LC-MS(/MS) data.

Mitra V, Smilde AK, Bischoff R, Horvatovich P.

Anal Chim Acta. 2018 Jan 25;999:37-53. doi: 10.1016/j.aca.2017.09.039. Epub 2017 Nov 2. Review.


Running-wheel activity delays mitochondrial respiratory flux decline in aging mouse muscle via a post-transcriptional mechanism.

Stolle S, Ciapaite J, Reijne AC, Talarovicova A, Wolters JC, Aguirre-Gamboa R, van der Vlies P, de Lange K, Neerincx PB, van der Vries G, Deelen P, Swertz MA, Li Y, Bischoff R, Permentier HP, Horvatovitch PL, Groen AK, van Dijk G, Reijngoud DJ, Bakker BM.

Aging Cell. 2018 Feb;17(1). doi: 10.1111/acel.12700. Epub 2017 Nov 9.


Accumulation of 5-oxoproline in myocardial dysfunction and the protective effects of OPLAH.

van der Pol A, Gil A, Silljé HHW, Tromp J, Ovchinnikova ES, Vreeswijk-Baudoin I, Hoes M, Domian IJ, van de Sluis B, van Deursen JM, Voors AA, van Veldhuisen DJ, van Gilst WH, Berezikov E, van der Harst P, de Boer RA, Bischoff R, van der Meer P.

Sci Transl Med. 2017 Nov 8;9(415). pii: eaam8574. doi: 10.1126/scitranslmed.aam8574.


Comparison of Targeted Mass Spectrometry Techniques with an Immunoassay: A Case Study for HSP90α.

Güzel C, Govorukhina NI, Stingl C, Dekker LJM, Boichenko A, van der Zee AGJ, Bischoff RPH, Luider TM.

Proteomics Clin Appl. 2018 Jan;12(1). doi: 10.1002/prca.201700107. Epub 2017 Oct 30.


Physicochemical Parameters Affecting the Electrospray Ionization Efficiency of Amino Acids after Acylation.

Hermans J, Ongay S, Markov V, Bischoff R.

Anal Chem. 2017 Sep 5;89(17):9159-9166. doi: 10.1021/acs.analchem.7b01899. Epub 2017 Aug 16.


Targeting transcription factor lysine acetylation in inflammatory airway diseases.

van den Bosch T, Kwiatkowski M, Bischoff R, Dekker FJ.

Epigenomics. 2017 Jul;9(7):1013-1028. doi: 10.2217/epi-2017-0027. Epub 2017 Jun 15. Review.


Specific Affinity Enrichment of Electrochemically Cleaved Peptides Based on Cu(II)-Mediated Spirolactone Tagging.

Zhang T, de Vries MP, Permentier HP, Bischoff R.

Anal Chem. 2017 Jul 5;89(13):7123-7129. doi: 10.1021/acs.analchem.7b01039. Epub 2017 Jun 19.


The relevance of Ki calculation for bi-substrate enzymes illustrated by kinetic evaluation of a novel lysine (K) acetyltransferase 8 inhibitor.

Wapenaar H, van den Bosch T, Leus NGJ, van der Wouden PE, Eleftheriadis N, Hermans J, Hailu GS, Rotili D, Mai A, Dömling A, Bischoff R, Haisma HJ, Dekker FJ.

Eur J Med Chem. 2017 Aug 18;136:480-486. doi: 10.1016/j.ejmech.2017.05.015. Epub 2017 May 5.


Assuring Consistent Performance of an Insulin-Like Growth Factor 1 MALDImmunoassay by Monitoring Measurement Quality Indicators.

Klont F, Ten Hacken NHT, Horvatovich P, Bakker SJL, Bischoff R.

Anal Chem. 2017 Jun 6;89(11):6188-6195. doi: 10.1021/acs.analchem.7b01125. Epub 2017 May 10.


HDAC1-3 inhibitor MS-275 enhances IL10 expression in RAW264.7 macrophages and reduces cigarette smoke-induced airway inflammation in mice.

Leus NG, van den Bosch T, van der Wouden PE, Krist K, Ourailidou ME, Eleftheriadis N, Kistemaker LE, Bos S, Gjaltema RA, Mekonnen SA, Bischoff R, Gosens R, Haisma HJ, Dekker FJ.

Sci Rep. 2017 Mar 27;7:45047. doi: 10.1038/srep45047.


A 6-alkylsalicylate histone acetyltransferase inhibitor inhibits histone acetylation and pro-inflammatory gene expression in murine precision-cut lung slices.

van den Bosch T, Leus NGJ, Wapenaar H, Boichenko A, Hermans J, Bischoff R, Haisma HJ, Dekker FJ.

Pulm Pharmacol Ther. 2017 Jun;44:88-95. doi: 10.1016/j.pupt.2017.03.006. Epub 2017 Mar 16.


Bioconjugation strategies to couple supramolecular exo-functionalized palladium cages to peptides for biomedical applications.

Han J, Schmidt A, Zhang T, Permentier H, Groothuis GM, Bischoff R, Kühn FE, Horvatovich P, Casini A.

Chem Commun (Camb). 2017 Jan 24;53(8):1405-1408. doi: 10.1039/c6cc08937b.


Relationship between plasma and salivary melatonin and cortisol investigated by LC-MS/MS.

van Faassen M, Bischoff R, Kema IP.

Clin Chem Lab Med. 2017 Aug 28;55(9):1340-1348. doi: 10.1515/cclm-2016-0817.


The degradation of nucleotide triphosphates extracted under boiling ethanol conditions is prevented by the yeast cellular matrix.

Gil A, Siegel D, Bonsing-Vedelaar S, Permentier H, Reijngoud DJ, Dekker F, Bischoff R.

Metabolomics. 2017;13(1):1. Epub 2016 Nov 28.


Global Mental Health in Action: Reducing Disparities One Community at a Time.

Bischoff RJ, Springer PR, Taylor N.

J Marital Fam Ther. 2017 Apr;43(2):276-290. doi: 10.1111/jmft.12202. Epub 2016 Nov 17. Review.


Activity-Dependent Photoaffinity Labeling of Metalloproteases.

Prely L, Klein T, Geurink PP, Paal K, Overkleeft HS, Bischoff R.

Methods Mol Biol. 2017;1491:103-111.


Serum Protein Markers for the Early Detection of Lung Cancer: A Focus on Autoantibodies.

Broodman I, Lindemans J, van Sten J, Bischoff R, Luider T.

J Proteome Res. 2017 Jan 6;16(1):3-13. doi: 10.1021/acs.jproteome.6b00559. Epub 2016 Nov 2. Review.


Proteogenomics: Key Driver for Clinical Discovery and Personalized Medicine.

Barbieri R, Guryev V, Brandsma CA, Suits F, Bischoff R, Horvatovich P.

Adv Exp Med Biol. 2016;926:21-47. Review.


Radiation chemical studies of Gly-Met-Gly in aqueous solution.

Barata-Vallejo S, Ferreri C, Zhang T, Permentier H, Bischoff R, Bobrowski K, Chatgilialoglu C.

Free Radic Res. 2016 Nov;50(sup1):S24-S39. Epub 2016 Oct 25.


Electrochemical Protein Cleavage in a Microfluidic Cell with Integrated Boron Doped Diamond Electrodes.

van den Brink FT, Zhang T, Ma L, Bomer J, Odijk M, Olthuis W, Permentier HP, Bischoff R, van den Berg A.

Anal Chem. 2016 Sep 20;88(18):9190-8. doi: 10.1021/acs.analchem.6b02413. Epub 2016 Aug 26.


Translational Targeted Proteomics Profiling of Mitochondrial Energy Metabolic Pathways in Mouse and Human Samples.

Wolters JC, Ciapaite J, van Eunen K, Niezen-Koning KE, Matton A, Porte RJ, Horvatovich P, Bakker BM, Bischoff R, Permentier HP.

J Proteome Res. 2016 Sep 2;15(9):3204-13. doi: 10.1021/acs.jproteome.6b00419. Epub 2016 Aug 5.


Malnutrition-associated liver steatosis and ATP depletion is caused by peroxisomal and mitochondrial dysfunction.

van Zutphen T, Ciapaite J, Bloks VW, Ackereley C, Gerding A, Jurdzinski A, de Moraes RA, Zhang L, Wolters JC, Bischoff R, Wanders RJ, Houten SM, Bronte-Tinkew D, Shatseva T, Lewis GF, Groen AK, Reijngoud DJ, Bakker BM, Jonker JW, Kim PK, Bandsma RH.

J Hepatol. 2016 Dec;65(6):1198-1208. doi: 10.1016/j.jhep.2016.05.046. Epub 2016 Jun 14.


Quantitative antibody-free LC-MS/MS analysis of sTRAIL in sputum and saliva at the sub-ng/mL level.

Wilffert D, Donzelli R, Asselman A, Hermans J, Govorukhina N, Ten Hacken NH, Quax WJ, van de Merbel NC, Bischoff R.

J Chromatogr B Analyt Technol Biomed Life Sci. 2016 Oct 1;1032:205-210. doi: 10.1016/j.jchromb.2016.04.041. Epub 2016 Apr 26.


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