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Items: 20

1.

Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.

Bolyen E, Rideout JR, Dillon MR, Bokulich NA, Abnet CC, Al-Ghalith GA, Alexander H, Alm EJ, Arumugam M, Asnicar F, Bai Y, Bisanz JE, Bittinger K, Brejnrod A, Brislawn CJ, Brown CT, Callahan BJ, Caraballo-Rodríguez AM, Chase J, Cope EK, Da Silva R, Diener C, Dorrestein PC, Douglas GM, Durall DM, Duvallet C, Edwardson CF, Ernst M, Estaki M, Fouquier J, Gauglitz JM, Gibbons SM, Gibson DL, Gonzalez A, Gorlick K, Guo J, Hillmann B, Holmes S, Holste H, Huttenhower C, Huttley GA, Janssen S, Jarmusch AK, Jiang L, Kaehler BD, Kang KB, Keefe CR, Keim P, Kelley ST, Knights D, Koester I, Kosciolek T, Kreps J, Langille MGI, Lee J, Ley R, Liu YX, Loftfield E, Lozupone C, Maher M, Marotz C, Martin BD, McDonald D, McIver LJ, Melnik AV, Metcalf JL, Morgan SC, Morton JT, Naimey AT, Navas-Molina JA, Nothias LF, Orchanian SB, Pearson T, Peoples SL, Petras D, Preuss ML, Pruesse E, Rasmussen LB, Rivers A, Robeson MS 2nd, Rosenthal P, Segata N, Shaffer M, Shiffer A, Sinha R, Song SJ, Spear JR, Swafford AD, Thompson LR, Torres PJ, Trinh P, Tripathi A, Turnbaugh PJ, Ul-Hasan S, van der Hooft JJJ, Vargas F, Vázquez-Baeza Y, Vogtmann E, von Hippel M, Walters W, Wan Y, Wang M, Warren J, Weber KC, Williamson CHD, Willis AD, Xu ZZ, Zaneveld JR, Zhang Y, Zhu Q, Knight R, Caporaso JG.

Nat Biotechnol. 2019 Aug 9. doi: 10.1038/s41587-019-0252-6. [Epub ahead of print]

PMID:
31399723
2.

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.

Bolyen E, Rideout JR, Dillon MR, Bokulich NA, Abnet CC, Al-Ghalith GA, Alexander H, Alm EJ, Arumugam M, Asnicar F, Bai Y, Bisanz JE, Bittinger K, Brejnrod A, Brislawn CJ, Brown CT, Callahan BJ, Caraballo-Rodríguez AM, Chase J, Cope EK, Da Silva R, Diener C, Dorrestein PC, Douglas GM, Durall DM, Duvallet C, Edwardson CF, Ernst M, Estaki M, Fouquier J, Gauglitz JM, Gibbons SM, Gibson DL, Gonzalez A, Gorlick K, Guo J, Hillmann B, Holmes S, Holste H, Huttenhower C, Huttley GA, Janssen S, Jarmusch AK, Jiang L, Kaehler BD, Kang KB, Keefe CR, Keim P, Kelley ST, Knights D, Koester I, Kosciolek T, Kreps J, Langille MGI, Lee J, Ley R, Liu YX, Loftfield E, Lozupone C, Maher M, Marotz C, Martin BD, McDonald D, McIver LJ, Melnik AV, Metcalf JL, Morgan SC, Morton JT, Naimey AT, Navas-Molina JA, Nothias LF, Orchanian SB, Pearson T, Peoples SL, Petras D, Preuss ML, Pruesse E, Rasmussen LB, Rivers A, Robeson MS 2nd, Rosenthal P, Segata N, Shaffer M, Shiffer A, Sinha R, Song SJ, Spear JR, Swafford AD, Thompson LR, Torres PJ, Trinh P, Tripathi A, Turnbaugh PJ, Ul-Hasan S, van der Hooft JJJ, Vargas F, Vázquez-Baeza Y, Vogtmann E, von Hippel M, Walters W, Wan Y, Wang M, Warren J, Weber KC, Williamson CHD, Willis AD, Xu ZZ, Zaneveld JR, Zhang Y, Zhu Q, Knight R, Caporaso JG.

Nat Biotechnol. 2019 Aug;37(8):852-857. doi: 10.1038/s41587-019-0209-9. No abstract available. Erratum in: Nat Biotechnol. 2019 Aug 9;:.

PMID:
31341288
3.

Meta-Analysis Reveals Reproducible Gut Microbiome Alterations in Response to a High-Fat Diet.

Bisanz JE, Upadhyay V, Turnbaugh JA, Ly K, Turnbaugh PJ.

Cell Host Microbe. 2019 Aug 14;26(2):265-272.e4. doi: 10.1016/j.chom.2019.06.013. Epub 2019 Jul 16.

PMID:
31324413
4.

Discovery and inhibition of an interspecies gut bacterial pathway for Levodopa metabolism.

Maini Rekdal V, Bess EN, Bisanz JE, Turnbaugh PJ, Balskus EP.

Science. 2019 Jun 14;364(6445). pii: eaau6323. doi: 10.1126/science.aau6323.

PMID:
31196984
5.

Nutrient Sensing in CD11c Cells Alters the Gut Microbiota to Regulate Food Intake and Body Mass.

Chagwedera DN, Ang QY, Bisanz JE, Leong YA, Ganeshan K, Cai J, Patterson AD, Turnbaugh PJ, Chawla A.

Cell Metab. 2019 Aug 6;30(2):364-373.e7. doi: 10.1016/j.cmet.2019.05.002. Epub 2019 May 23.

PMID:
31130466
6.

Immobilization of cadmium and lead by Lactobacillus rhamnosus GR-1 mitigates apical-to-basolateral heavy metal translocation in a Caco-2 model of the intestinal epithelium.

Daisley BA, Monachese M, Trinder M, Bisanz JE, Chmiel JA, Burton JP, Reid G.

Gut Microbes. 2019;10(3):321-333. doi: 10.1080/19490976.2018.1526581. Epub 2018 Nov 14. Erratum in: Gut Microbes. 2019;10(4):553.

7.

How to Determine the Role of the Microbiome in Drug Disposition.

Bisanz JE, Spanogiannopoulos P, Pieper LM, Bustion AE, Turnbaugh PJ.

Drug Metab Dispos. 2018 Nov;46(11):1588-1595. doi: 10.1124/dmd.118.083402. Epub 2018 Aug 15. Review.

PMID:
30111623
8.

Discovery and characterization of a prevalent human gut bacterial enzyme sufficient for the inactivation of a family of plant toxins.

Koppel N, Bisanz JE, Pandelia ME, Turnbaugh PJ, Balskus EP.

Elife. 2018 May 15;7. pii: e33953. doi: 10.7554/eLife.33953.

9.

Evaluation of sampling and storage procedures on preserving the community structure of stool microbiota: A simple at-home toilet-paper collection method.

Al KF, Bisanz JE, Gloor GB, Reid G, Burton JP.

J Microbiol Methods. 2018 Jan;144:117-121. doi: 10.1016/j.mimet.2017.11.014. Epub 2017 Nov 16.

PMID:
29155236
10.

Long-term irritable bowel syndrome symptom control with reintroduction of selected FODMAPs.

Harvie RM, Chisholm AW, Bisanz JE, Burton JP, Herbison P, Schultz K, Schultz M.

World J Gastroenterol. 2017 Jul 7;23(25):4632-4643. doi: 10.3748/wjg.v23.i25.4632.

11.

The oral microbiome of patients with axial spondyloarthritis compared to healthy individuals.

Bisanz JE, Suppiah P, Thomson WM, Milne T, Yeoh N, Nolan A, Ettinger G, Reid G, Gloor GB, Burton JP, Cullinan MP, Stebbings SM.

PeerJ. 2016 Jun 9;4:e2095. doi: 10.7717/peerj.2095. eCollection 2016.

12.

A multi-platform metabolomics approach identifies highly specific biomarkers of bacterial diversity in the vagina of pregnant and non-pregnant women.

McMillan A, Rulisa S, Sumarah M, Macklaim JM, Renaud J, Bisanz JE, Gloor GB, Reid G.

Sci Rep. 2015 Sep 21;5:14174. doi: 10.1038/srep14174.

13.

Probiotic lactobacilli: a potential prophylactic treatment for reducing pesticide absorption in humans and wildlife.

Trinder M, Bisanz JE, Burton JP, Reid G.

Benef Microbes. 2015;6(6):841-7. doi: 10.3920/BM2015.0022. Epub 2015 Jun 30. Review.

PMID:
26123785
14.

Microbiota at Multiple Body Sites during Pregnancy in a Rural Tanzanian Population and Effects of Moringa-Supplemented Probiotic Yogurt.

Bisanz JE, Enos MK, PrayGod G, Seney S, Macklaim JM, Chilton S, Willner D, Knight R, Fusch C, Fusch G, Gloor GB, Burton JP, Reid G.

Appl Environ Microbiol. 2015 Aug;81(15):4965-75. doi: 10.1128/AEM.00780-15. Epub 2015 May 15.

15.

Randomized open-label pilot study of the influence of probiotics and the gut microbiome on toxic metal levels in Tanzanian pregnant women and school children.

Bisanz JE, Enos MK, Mwanga JR, Changalucha J, Burton JP, Gloor GB, Reid G.

MBio. 2014 Oct 7;5(5):e01580-14. doi: 10.1128/mBio.01580-14.

16.

A systems biology approach investigating the effect of probiotics on the vaginal microbiome and host responses in a double blind, placebo-controlled clinical trial of post-menopausal women.

Bisanz JE, Seney S, McMillan A, Vongsa R, Koenig D, Wong L, Dvoracek B, Gloor GB, Sumarah M, Ford B, Herman D, Burton JP, Reid G.

PLoS One. 2014 Aug 15;9(8):e104511. doi: 10.1371/journal.pone.0104511. eCollection 2014.

17.

The rationale for probiotics improving reproductive health and pregnancy outcome.

Reid JN, Bisanz JE, Monachese M, Burton JP, Reid G.

Am J Reprod Immunol. 2013 Jun;69(6):558-66. doi: 10.1111/aji.12086. Epub 2013 Feb 18. Review.

PMID:
23414386
18.

Vaginal microbiome and epithelial gene array in post-menopausal women with moderate to severe dryness.

Hummelen R, Macklaim JM, Bisanz JE, Hammond JA, McMillan A, Vongsa R, Koenig D, Gloor GB, Reid G.

PLoS One. 2011;6(11):e26602. doi: 10.1371/journal.pone.0026602. Epub 2011 Nov 2.

19.

Unraveling how probiotic yogurt works.

Bisanz JE, Reid G.

Sci Transl Med. 2011 Oct 26;3(106):106ps41. doi: 10.1126/scitranslmed.3003291.

PMID:
22030747
20.

Probiotic strategies for the treatment and prevention of bacterial vaginosis.

MacPhee RA, Hummelen R, Bisanz JE, Miller WL, Reid G.

Expert Opin Pharmacother. 2010 Dec;11(18):2985-95. doi: 10.1517/14656566.2010.512004. Review.

PMID:
21080853

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