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Association of Prenatal Maternal Depression and Anxiety Symptoms With Infant White Matter Microstructure.

Dean DC 3rd, Planalp EM, Wooten W, Kecskemeti SR, Adluru N, Schmidt CK, Frye C, Birn RM, Burghy CA, Schmidt NL, Styner MA, Short SJ, Kalin NH, Goldsmith HH, Alexander AL, Davidson RJ.

JAMA Pediatr. 2018 Aug 27. doi: 10.1001/jamapediatrics.2018.2132. [Epub ahead of print]


Functional Connectivity within the Primate Extended Amygdala Is Heritable and Associated with Early-Life Anxious Temperament.

Fox AS, Oler JA, Birn RM, Shackman AJ, Alexander AL, Kalin NH.

J Neurosci. 2018 Aug 29;38(35):7611-7621. doi: 10.1523/JNEUROSCI.0102-18.2018. Epub 2018 Jul 30.


Association of acute depressive symptoms and functional connectivity of emotional processing regions following sport-related concussion.

McCuddy WT, EspaƱa LY, Nelson LD, Birn RM, Mayer AR, Meier TB.

Neuroimage Clin. 2018 May 9;19:434-442. doi: 10.1016/j.nicl.2018.05.011. eCollection 2018.


Childhood Emotional Abuse Moderates Associations Among Corticomotor White Matter Structure and Stress Neuromodulators in Women With and Without Depression.

Frost CP, Meyerand ME, Birn RM, Hoks RM, Walsh EC, Abercrombie HC.

Front Neurosci. 2018 Apr 23;12:256. doi: 10.3389/fnins.2018.00256. eCollection 2018.


Bayesian convolutional neural network based MRI brain extraction on nonhuman primates.

Zhao G, Liu F, Oler JA, Meyerand ME, Kalin NH, Birn RM.

Neuroimage. 2018 Jul 15;175:32-44. doi: 10.1016/j.neuroimage.2018.03.065. Epub 2018 Mar 28.


Neural Signaling of Cortisol, Childhood Emotional Abuse, and Depression-Related Memory Bias.

Abercrombie HC, Frost CP, Walsh EC, Hoks RM, Cornejo MD, Sampe MC, Gaffey AE, Plante DT, Ladd CO, Birn RM.

Biol Psychiatry Cogn Neurosci Neuroimaging. 2018 Mar;3(3):274-284. doi: 10.1016/j.bpsc.2017.11.005. Epub 2017 Nov 22.


Early childhood stress exposure, reward pathways, and adult decision making.

Birn RM, Roeber BJ, Pollak SD.

Proc Natl Acad Sci U S A. 2017 Dec 19;114(51):13549-13554. doi: 10.1073/pnas.1708791114. Epub 2017 Dec 4.


Reduced resting-state thalamostriatal functional connectivity is associated with excessive daytime sleepiness in persons with and without depressive disorders.

Plante DT, Birn RM, Walsh EC, Hoks RM, Cornejo MD, Abercrombie HC.

J Affect Disord. 2018 Feb;227:517-520. doi: 10.1016/j.jad.2017.11.054. Epub 2017 Nov 14.


Experience-Driven Differences in Childhood Cortisol Predict Affect-Relevant Brain Function and Coping in Adolescent Monozygotic Twins.

Burghy CA, Fox ME, Cornejo MD, Stodola DE, Sommerfeldt SL, Westbrook CA, Van Hulle C, Schmidt NL, Goldsmith HH, Davidson RJ, Birn RM.

Sci Rep. 2016 Nov 22;6:37081. doi: 10.1038/srep37081.


Classification and Extraction of Resting State Networks Using Healthy and Epilepsy fMRI Data.

Vergun S, Gaggl W, Nair VA, Suhonen JI, Birn RM, Ahmed AS, Meyerand ME, Reuss J, DeYoe EA, Prabhakaran V.

Front Neurosci. 2016 Sep 27;10:440. eCollection 2016.


An improved model of motion-related signal changes in fMRI.

Patriat R, Reynolds RC, Birn RM.

Neuroimage. 2017 Jan 1;144(Pt A):74-82. doi: 10.1016/j.neuroimage.2016.08.051. Epub 2016 Aug 25.


Implication of the Slow-5 Oscillations in the Disruption of the Default-Mode Network in Healthy Aging and Stroke.

La C, Nair VA, Mossahebi P, Young BM, Chacon M, Jensen M, Birn RM, Meyerand ME, Prabhakaran V.

Brain Connect. 2016 Jul;6(6):482-95. doi: 10.1089/brain.2015.0375.


Reliability and reproducibility of individual differences in functional connectivity acquired during task and resting state.

Shah LM, Cramer JA, Ferguson MA, Birn RM, Anderson JS.

Brain Behav. 2016 Mar 30;6(5):e00456. doi: 10.1002/brb3.456. eCollection 2016 May.


Default-Mode Network Abnormalities in Pediatric Posttraumatic Stress Disorder.

Patriat R, Birn RM, Keding TJ, Herringa RJ.

J Am Acad Child Adolesc Psychiatry. 2016 Apr;55(4):319-27. doi: 10.1016/j.jaac.2016.01.010. Epub 2016 Feb 4.


Connectivity between the central nucleus of the amygdala and the bed nucleus of the stria terminalis in the non-human primate: neuronal tract tracing and developmental neuroimaging studies.

Oler JA, Tromp DP, Fox AS, Kovner R, Davidson RJ, Alexander AL, McFarlin DR, Birn RM, E Berg B, deCampo DM, Kalin NH, Fudge JL.

Brain Struct Funct. 2017 Jan;222(1):21-39. doi: 10.1007/s00429-016-1198-9. Epub 2016 Feb 23.


Using Edge Voxel Information to Improve Motion Regression for rs-fMRI Connectivity Studies.

Patriat R, Molloy EK, Birn RM.

Brain Connect. 2015 Nov;5(9):582-95. doi: 10.1089/brain.2014.0321. Epub 2015 Sep 28.


Age-related reorganizational changes in modularity and functional connectivity of human brain networks.

Song J, Birn RM, Boly M, Meier TB, Nair VA, Meyerand ME, Prabhakaran V.

Brain Connect. 2014 Nov;4(9):662-76. doi: 10.1089/brain.2014.0286. Epub 2014 Oct 6.


Childhood maltreatment and combat posttraumatic stress differentially predict fear-related fronto-subcortical connectivity.

Birn RM, Patriat R, Phillips ML, Germain A, Herringa RJ.

Depress Anxiety. 2014 Oct;31(10):880-892. doi: 10.1002/da.22291. Epub 2014 Aug 8.


The influence of physiological noise correction on test-retest reliability of resting-state functional connectivity.

Birn RM, Cornejo MD, Molloy EK, Patriat R, Meier TB, Kirk GR, Nair VA, Meyerand ME, Prabhakaran V.

Brain Connect. 2014 Sep;4(7):511-22. doi: 10.1089/brain.2014.0284.


Extreme early-life anxiety is associated with an evolutionarily conserved reduction in the strength of intrinsic functional connectivity between the dorsolateral prefrontal cortex and the central nucleus of the amygdala.

Birn RM, Shackman AJ, Oler JA, Williams LE, McFarlin DR, Rogers GM, Shelton SE, Alexander AL, Pine DS, Slattery MJ, Davidson RJ, Fox AS, Kalin NH.

Mol Psychiatry. 2014 Aug;19(8):853. doi: 10.1038/mp.2014.85. No abstract available.


Individual classification of children with epilepsy using support vector machine with multiple indices of diffusion tensor imaging.

Amarreh I, Meyerand ME, Stafstrom C, Hermann BP, Birn RM.

Neuroimage Clin. 2014 Mar 29;4:757-64. doi: 10.1016/j.nicl.2014.02.006. eCollection 2014.


Evolutionarily conserved prefrontal-amygdalar dysfunction in early-life anxiety.

Birn RM, Shackman AJ, Oler JA, Williams LE, McFarlin DR, Rogers GM, Shelton SE, Alexander AL, Pine DS, Slattery MJ, Davidson RJ, Fox AS, Kalin NH.

Mol Psychiatry. 2014 Aug;19(8):915-22. doi: 10.1038/mp.2014.46. Epub 2014 May 27.


The neural correlates of age effects on verbal-spatial binding in working memory.

Meier TB, Nair VA, Meyerand ME, Birn RM, Prabhakaran V.

Behav Brain Res. 2014 Jun 1;266:146-52. doi: 10.1016/j.bbr.2014.03.005. Epub 2014 Mar 12.


An open science resource for establishing reliability and reproducibility in functional connectomics.

Zuo XN, Anderson JS, Bellec P, Birn RM, Biswal BB, Blautzik J, Breitner JC, Buckner RL, Calhoun VD, Castellanos FX, Chen A, Chen B, Chen J, Chen X, Colcombe SJ, Courtney W, Craddock RC, Di Martino A, Dong HM, Fu X, Gong Q, Gorgolewski KJ, Han Y, He Y, He Y, Ho E, Holmes A, Hou XH, Huckins J, Jiang T, Jiang Y, Kelley W, Kelly C, King M, LaConte SM, Lainhart JE, Lei X, Li HJ, Li K, Li K, Lin Q, Liu D, Liu J, Liu X, Liu Y, Lu G, Lu J, Luna B, Luo J, Lurie D, Mao Y, Margulies DS, Mayer AR, Meindl T, Meyerand ME, Nan W, Nielsen JA, O'Connor D, Paulsen D, Prabhakaran V, Qi Z, Qiu J, Shao C, Shehzad Z, Tang W, Villringer A, Wang H, Wang K, Wei D, Wei GX, Weng XC, Wu X, Xu T, Yang N, Yang Z, Zang YF, Zhang L, Zhang Q, Zhang Z, Zhang Z, Zhao K, Zhen Z, Zhou Y, Zhu XT, Milham MP.

Sci Data. 2014 Dec 9;1:140049. doi: 10.1038/sdata.2014.49. eCollection 2014.


Childhood maltreatment is associated with altered fear circuitry and increased internalizing symptoms by late adolescence.

Herringa RJ, Birn RM, Ruttle PL, Burghy CA, Stodola DE, Davidson RJ, Essex MJ.

Proc Natl Acad Sci U S A. 2013 Nov 19;110(47):19119-24. doi: 10.1073/pnas.1310766110. Epub 2013 Nov 4.


The influence of spatial resolution and smoothing on the detectability of resting-state and task fMRI.

Molloy EK, Meyerand ME, Birn RM.

Neuroimage. 2014 Feb 1;86:221-30. doi: 10.1016/j.neuroimage.2013.09.001. Epub 2013 Sep 8.


The effect of scan length on the reliability of resting-state fMRI connectivity estimates.

Birn RM, Molloy EK, Patriat R, Parker T, Meier TB, Kirk GR, Nair VA, Meyerand ME, Prabhakaran V.

Neuroimage. 2013 Dec;83:550-8. doi: 10.1016/j.neuroimage.2013.05.099. Epub 2013 Jun 6.


Characterizing Functional Connectivity Differences in Aging Adults using Machine Learning on Resting State fMRI Data.

Vergun S, Deshpande AS, Meier TB, Song J, Tudorascu DL, Nair VA, Singh V, Biswal BB, Meyerand ME, Birn RM, Prabhakaran V.

Front Comput Neurosci. 2013 Apr 25;7:38. doi: 10.3389/fncom.2013.00038. eCollection 2013.


The effect of resting condition on resting-state fMRI reliability and consistency: a comparison between resting with eyes open, closed, and fixated.

Patriat R, Molloy EK, Meier TB, Kirk GR, Nair VA, Meyerand ME, Prabhakaran V, Birn RM.

Neuroimage. 2013 Sep;78:463-73. doi: 10.1016/j.neuroimage.2013.04.013. Epub 2013 Apr 15.


Resting-state fMRI confounds and cleanup.

Murphy K, Birn RM, Bandettini PA.

Neuroimage. 2013 Oct 15;80:349-59. doi: 10.1016/j.neuroimage.2013.04.001. Epub 2013 Apr 6. Review.


Age-related differences in test-retest reliability in resting-state brain functional connectivity.

Song J, Desphande AS, Meier TB, Tudorascu DL, Vergun S, Nair VA, Biswal BB, Meyerand ME, Birn RM, Bellec P, Prabhakaran V.

PLoS One. 2012;7(12):e49847. doi: 10.1371/journal.pone.0049847. Epub 2012 Dec 5.


Developmental pathways to amygdala-prefrontal function and internalizing symptoms in adolescence.

Burghy CA, Stodola DE, Ruttle PL, Molloy EK, Armstrong JM, Oler JA, Fox ME, Hayes AS, Kalin NH, Essex MJ, Davidson RJ, Birn RM.

Nat Neurosci. 2012 Dec;15(12):1736-41. doi: 10.1038/nn.3257. Epub 2012 Nov 11.


Parallel ICA identifies sub-components of resting state networks that covary with behavioral indices.

Meier TB, Wildenberg JC, Liu J, Chen J, Calhoun VD, Biswal BB, Meyerand ME, Birn RM, Prabhakaran V.

Front Hum Neurosci. 2012 Oct 11;6:281. doi: 10.3389/fnhum.2012.00281. eCollection 2012.


Evidence for coordinated functional activity within the extended amygdala of non-human and human primates.

Oler JA, Birn RM, Patriat R, Fox AS, Shelton SE, Burghy CA, Stodola DE, Essex MJ, Davidson RJ, Kalin NH.

Neuroimage. 2012 Jul 16;61(4):1059-66. doi: 10.1016/j.neuroimage.2012.03.045. Epub 2012 Mar 23.


Task-related BOLD responses and resting-state functional connectivity during physiological clamping of end-tidal CO(2).

Madjar C, Gauthier CJ, Bellec P, Birn RM, Brooks JC, Hoge RD.

Neuroimage. 2012 May 15;61(1):41-9. doi: 10.1016/j.neuroimage.2012.02.080. Epub 2012 Mar 6.


The role of physiological noise in resting-state functional connectivity.

Birn RM.

Neuroimage. 2012 Aug 15;62(2):864-70. doi: 10.1016/j.neuroimage.2012.01.016. Epub 2012 Jan 8. Review.


Support vector machine classification and characterization of age-related reorganization of functional brain networks.

Meier TB, Desphande AS, Vergun S, Nair VA, Song J, Biswal BB, Meyerand ME, Birn RM, Prabhakaran V.

Neuroimage. 2012 Mar;60(1):601-13. doi: 10.1016/j.neuroimage.2011.12.052. Epub 2011 Dec 28.


Sources of group differences in functional connectivity: an investigation applied to autism spectrum disorder.

Jones TB, Bandettini PA, Kenworthy L, Case LK, Milleville SC, Martin A, Birn RM.

Neuroimage. 2010 Jan 1;49(1):401-14. doi: 10.1016/j.neuroimage.2009.07.051. Epub 2009 Jul 29.


Neural systems supporting lexical search guided by letter and semantic category cues: a self-paced overt response fMRI study of verbal fluency.

Birn RM, Kenworthy L, Case L, Caravella R, Jones TB, Bandettini PA, Martin A.

Neuroimage. 2010 Jan 1;49(1):1099-107. doi: 10.1016/j.neuroimage.2009.07.036. Epub 2009 Jul 23.


fMRI in the presence of task-correlated breathing variations.

Birn RM, Murphy K, Handwerker DA, Bandettini PA.

Neuroimage. 2009 Sep;47(3):1092-104. doi: 10.1016/j.neuroimage.2009.05.030. Epub 2009 May 19.


Single-trial fMRI shows contralesional activity linked to overt naming errors in chronic aphasic patients.

Postman-Caucheteux WA, Birn RM, Pursley RH, Butman JA, Solomon JM, Picchioni D, McArdle J, Braun AR.

J Cogn Neurosci. 2010 Jun;22(6):1299-318. doi: 10.1162/jocn.2009.21261.


The impact of global signal regression on resting state correlations: are anti-correlated networks introduced?

Murphy K, Birn RM, Handwerker DA, Jones TB, Bandettini PA.

Neuroimage. 2009 Feb 1;44(3):893-905. doi: 10.1016/j.neuroimage.2008.09.036. Epub 2008 Oct 11.


Integration of motion correction and physiological noise regression in fMRI.

Jones TB, Bandettini PA, Birn RM.

Neuroimage. 2008 Aug 15;42(2):582-90. doi: 10.1016/j.neuroimage.2008.05.019. Epub 2008 May 21.


The effect of respiration variations on independent component analysis results of resting state functional connectivity.

Birn RM, Murphy K, Bandettini PA.

Hum Brain Mapp. 2008 Jul;29(7):740-50. doi: 10.1002/hbm.20577.


The respiration response function: the temporal dynamics of fMRI signal fluctuations related to changes in respiration.

Birn RM, Smith MA, Jones TB, Bandettini PA.

Neuroimage. 2008 Apr 1;40(2):644-654. doi: 10.1016/j.neuroimage.2007.11.059. Epub 2007 Dec 15.


Separating respiratory-variation-related fluctuations from neuronal-activity-related fluctuations in fMRI.

Birn RM, Diamond JB, Smith MA, Bandettini PA.

Neuroimage. 2006 Jul 15;31(4):1536-48. Epub 2006 Apr 24.


The effect of stimulus duty cycle and "off" duration on BOLD response linearity.

Birn RM, Bandettini PA.

Neuroimage. 2005 Aug 1;27(1):70-82.


Experimental designs and processing strategies for fMRI studies involving overt verbal responses.

Birn RM, Cox RW, Bandettini PA.

Neuroimage. 2004 Nov;23(3):1046-58.


Detection versus estimation in event-related fMRI: choosing the optimal stimulus timing.

Birn RM, Cox RW, Bandettini PA.

Neuroimage. 2002 Jan;15(1):252-64.


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