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Items: 29

1.

Super-Resolution Microscopy of Chromatin.

Birk UJ.

Genes (Basel). 2019 Jun 28;10(7). pii: E493. doi: 10.3390/genes10070493. Review.

2.

Nanoscale distribution of TLR4 on primary human macrophages stimulated with LPS and ATI.

Neumann J, Ziegler K, Gelléri M, Fröhlich-Nowoisky J, Liu F, Bellinghausen I, Schuppan D, Birk U, Pöschl U, Cremer C, Lucas K.

Nanoscale. 2019 May 16;11(19):9769-9779. doi: 10.1039/c9nr00943d.

PMID:
31066732
3.

Super-resolution binding activated localization microscopy through reversible change of DNA conformation.

Szczurek A, Birk U, Knecht H, Dobrucki J, Mai S, Cremer C.

Nucleus. 2018 Jan 1;9(1):182-189. doi: 10.1080/19491034.2017.1419846. Review.

4.

Super-resolution microscopy with very large working distance by means of distributed aperture illumination.

Birk U, Hase JV, Cremer C.

Sci Rep. 2017 Jun 16;7(1):3685. doi: 10.1038/s41598-017-03743-4.

5.

Super-resolution microscopy approaches to nuclear nanostructure imaging.

Cremer C, Szczurek A, Schock F, Gourram A, Birk U.

Methods. 2017 Jul 1;123:11-32. doi: 10.1016/j.ymeth.2017.03.019. Epub 2017 Apr 6. Review.

PMID:
28390838
6.

Imaging chromatin nanostructure with binding-activated localization microscopy based on DNA structure fluctuations.

Szczurek A, Klewes L, Xing J, Gourram A, Birk U, Knecht H, Dobrucki JW, Mai S, Cremer C.

Nucleic Acids Res. 2017 May 5;45(8):e56. doi: 10.1093/nar/gkw1301.

7.

Single Molecule Localization Microscopy of Mammalian Cell Nuclei on the Nanoscale.

Szczurek A, Xing J, Birk UJ, Cremer C.

Front Genet. 2016 Jun 24;7:114. doi: 10.3389/fgene.2016.00114. eCollection 2016.

8.

Quantitative super-resolution localization microscopy of DNA in situ using Vybrant® DyeCycle™ Violet fluorescent probe.

Żurek-Biesiada D, Szczurek AT, Prakash K, Best G, Mohana GK, Lee HK, Roignant JY, Dobrucki JW, Cremer C, Birk U.

Data Brief. 2016 Jan 29;7:157-71. doi: 10.1016/j.dib.2016.01.041. eCollection 2016 Jun.

9.

Superresolution imaging reveals structurally distinct periodic patterns of chromatin along pachytene chromosomes.

Prakash K, Fournier D, Redl S, Best G, Borsos M, Tiwari VK, Tachibana-Konwalski K, Ketting RF, Parekh SH, Cremer C, Birk UJ.

Proc Natl Acad Sci U S A. 2015 Nov 24;112(47):14635-40. doi: 10.1073/pnas.1516928112. Epub 2015 Nov 11.

10.

Single-Molecule Localization Microscopy allows for the analysis of cancer metastasis-specific miRNA distribution on the nanoscale.

Oleksiuk O, Abba M, Tezcan KC, Schaufler W, Bestvater F, Patil N, Birk U, Hafner M, Altevogt P, Cremer C, Allgayer H.

Oncotarget. 2015 Dec 29;6(42):44745-57. doi: 10.18632/oncotarget.6297.

11.

A transient ischemic environment induces reversible compaction of chromatin.

Kirmes I, Szczurek A, Prakash K, Charapitsa I, Heiser C, Musheev M, Schock F, Fornalczyk K, Ma D, Birk U, Cremer C, Reid G.

Genome Biol. 2015 Nov 5;16:246. doi: 10.1186/s13059-015-0802-2.

12.

Localization microscopy of DNA in situ using Vybrant(®) DyeCycle™ Violet fluorescent probe: A new approach to study nuclear nanostructure at single molecule resolution.

Żurek-Biesiada D, Szczurek AT, Prakash K, Mohana GK, Lee HK, Roignant JY, Birk UJ, Dobrucki JW, Cremer C.

Exp Cell Res. 2016 May 1;343(2):97-106. doi: 10.1016/j.yexcr.2015.08.020. Epub 2015 Sep 1.

PMID:
26341267
13.

Single molecule localization microscopy of the distribution of chromatin using Hoechst and DAPI fluorescent probes.

Szczurek AT, Prakash K, Lee HK, Zurek-Biesiada DJ, Best G, Hagmann M, Dobrucki JW, Cremer C, Birk U.

Nucleus. 2014 Jul-Aug;5(4):331-40. doi: 10.4161/nucl.29564.

14.

Application perspectives of localization microscopy in virology.

Cremer C, Kaufmann R, Gunkel M, Polanski F, Müller P, Dierkes R, Degenhard S, Wege C, Hausmann M, Birk U.

Histochem Cell Biol. 2014 Jul;142(1):43-59. doi: 10.1007/s00418-014-1203-4. Epub 2014 Mar 11.

PMID:
24614971
15.

Automated motion correction for in vivo optical projection tomography.

Zhu S, Dong D, Birk UJ, Rieckher M, Tavernarakis N, Qu X, Liang J, Tian J, Ripoll J.

IEEE Trans Med Imaging. 2012 Jul;31(7):1358-71. doi: 10.1109/TMI.2012.2188836. Epub 2012 Feb 24.

PMID:
22374352
16.

Microscopic optical projection tomography in vivo.

Rieckher M, Birk UJ, Meyer H, Ripoll J, Tavernarakis N.

PLoS One. 2011 Apr 29;6(4):e18963. doi: 10.1371/journal.pone.0018963.

17.

Improved reconstructions and generalized filtered back projection for optical projection tomography.

Birk UJ, Darrell A, Konstantinides N, Sarasa-Renedo A, Ripoll J.

Appl Opt. 2011 Feb 1;50(4):392-8. doi: 10.1364/AO.50.000392.

PMID:
21283227
18.

Correction for specimen movement and rotation errors for in-vivo Optical Projection Tomography.

Birk UJ, Rieckher M, Konstantinides N, Darrell A, Sarasa-Renedo A, Meyer H, Tavernarakis N, Ripoll J.

Biomed Opt Express. 2010 Jul 14;1(1):87-96.

19.

Source intensity profile in noncontact optical tomography.

Sarasa-Renedo A, Favicchio R, Birk U, Zacharakis G, Mamalaki C, Ripoll J.

Opt Lett. 2010 Jan 1;35(1):34-6. doi: 10.1364/OL.35.000034.

PMID:
20664664
20.

Implicit self-esteem in recurrently depressed patients.

Risch AK, Buba A, Birk U, Morina N, Steffens MC, Stangier U.

J Behav Ther Exp Psychiatry. 2010 Sep;41(3):199-206. doi: 10.1016/j.jbtep.2010.01.003. Epub 2010 Jan 13.

PMID:
20132925
21.

Model based precision structural measurements on barely resolved objects.

Baddeley D, Weiland Y, Batram C, Birk U, Cremer C.

J Microsc. 2010 Jan;237(1):70-8. doi: 10.1111/j.1365-2818.2009.03304.x.

22.

Measurement of replication structures at the nanometer scale using super-resolution light microscopy.

Baddeley D, Chagin VO, Schermelleh L, Martin S, Pombo A, Carlton PM, Gahl A, Domaing P, Birk U, Leonhardt H, Cremer C, Cardoso MC.

Nucleic Acids Res. 2010 Jan;38(2):e8. doi: 10.1093/nar/gkp901. Epub 2009 Oct 28.

23.

Festschrift to recognise and celebrate Christoph Cremer's contribution to the field of biophysics on the occasion of his 65th birthday. Preface.

Birk UJ, Hausmann M.

Eur Biophys J. 2009 Jul;38(6):719-20. doi: 10.1007/s00249-009-0500-7. Epub 2009 Jun 18. No abstract available.

PMID:
19536534
24.

Nanosizing by spatially modulated illumination (SMI) microscopy and applications to the nucleus.

Birk UJ, Baddeley D, Cremer C.

Methods Mol Biol. 2009;464:389-401. doi: 10.1007/978-1-60327-461-6_21.

PMID:
18951196
25.

High-precision structural analysis of subnuclear complexes in fixed and live cells via spatially modulated illumination (SMI) microscopy.

Reymann J, Baddeley D, Gunkel M, Lemmer P, Stadter W, Jegou T, Rippe K, Cremer C, Birk U.

Chromosome Res. 2008;16(3):367-82. doi: 10.1007/s10577-008-1238-2.

PMID:
18461478
26.

Nanostructure analysis using spatially modulated illumination microscopy.

Baddeley D, Batram C, Weiland Y, Cremer C, Birk UJ.

Nat Protoc. 2007;2(10):2640-6.

PMID:
17948007
27.

Nanostructure of specific chromatin regions and nuclear complexes.

Mathée H, Baddeley D, Wotzlaw C, Fandrey J, Cremer C, Birk U.

Histochem Cell Biol. 2006 Jan;125(1-2):75-82. Epub 2005 Nov 12.

PMID:
16284774
28.

[Frequency of reoperations after amniotic membrane transplantation].

Denk OP, Birk U, Von Eicken J, Knorr M.

Klin Monbl Augenheilkd. 2004 Jan;221(1):29-34. German.

PMID:
14745675
29.

Heparin-induced antibodies as a risk factor for thromboembolism and haemorrhage in patients undergoing chronic haemodialysis.

Greinacher A, Zinn S, Wizemann, Birk UW.

Lancet. 1996 Sep 14;348(9029):764. No abstract available.

PMID:
8806330

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