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Items: 1 to 50 of 226

1.

Whole-chromosome paints in maize reveal rearrangements, nuclear domains, and chromosomal relationships.

Albert PS, Zhang T, Semrau K, Rouillard JM, Kao YH, Wang CR, Danilova TV, Jiang J, Birchler JA.

Proc Natl Acad Sci U S A. 2019 Jan 29;116(5):1679-1685. doi: 10.1073/pnas.1813957116. Epub 2019 Jan 17.

2.

An overview of rice genetics research in China.

Birchler JA.

J Genet Genomics. 2018 Nov 20;45(11):563-564. doi: 10.1016/j.jgg.2018.11.002. No abstract available.

PMID:
30482272
3.

Global impacts of chromosomal imbalance on gene expression in Arabidopsis and other taxa.

Hou J, Shi X, Chen C, Islam MS, Johnson AF, Kanno T, Huettel B, Yen MR, Hsu FM, Ji T, Chen PY, Matzke M, Matzke AJM, Cheng J, Birchler JA.

Proc Natl Acad Sci U S A. 2018 Nov 27;115(48):E11321-E11330. doi: 10.1073/pnas.1807796115. Epub 2018 Nov 14.

4.

The Behavior of the Maize B Chromosome and Centromere.

Su H, Liu Y, Liu Y, Birchler JA, Han F.

Genes (Basel). 2018 Oct 1;9(10). pii: E476. doi: 10.3390/genes9100476. Review.

5.

Meiotic Studies on Combinations of Chromosomes With Different Sized Centromeres in Maize.

Han F, Lamb JC, McCaw ME, Gao Z, Zhang B, Swyers NC, Birchler JA.

Front Plant Sci. 2018 Jun 13;9:785. doi: 10.3389/fpls.2018.00785. eCollection 2018.

6.

Parallel altitudinal clines reveal trends in adaptive evolution of genome size in Zea mays.

Bilinski P, Albert PS, Berg JJ, Birchler JA, Grote MN, Lorant A, Quezada J, Swarts K, Yang J, Ross-Ibarra J.

PLoS Genet. 2018 May 10;14(5):e1007162. doi: 10.1371/journal.pgen.1007162. eCollection 2018 May.

7.

A Kinesin-14 Motor Activates Neocentromeres to Promote Meiotic Drive in Maize.

Dawe RK, Lowry EG, Gent JI, Stitzer MC, Swentowsky KW, Higgins DM, Ross-Ibarra J, Wallace JG, Kanizay LB, Alabady M, Qiu W, Tseng KF, Wang N, Gao Z, Birchler JA, Harkess AE, Hodges AL, Hiatt EN.

Cell. 2018 May 3;173(4):839-850.e18. doi: 10.1016/j.cell.2018.03.009. Epub 2018 Apr 5.

PMID:
29628142
8.

High-efficiency genome editing using a dmc1 promoter-controlled CRISPR/Cas9 system in maize.

Feng C, Su H, Bai H, Wang R, Liu Y, Guo X, Liu C, Zhang J, Yuan J, Birchler JA, Han F.

Plant Biotechnol J. 2018 Nov;16(11):1848-1857. doi: 10.1111/pbi.12920. Epub 2018 Apr 30.

9.

Barbara McClintock's Unsolved Chromosomal Mysteries: Parallels to Common Rearrangements and Karyotype Evolution.

Birchler JA, Han F.

Plant Cell. 2018 Apr;30(4):771-779. doi: 10.1105/tpc.17.00989. Epub 2018 Mar 15.

PMID:
29545470
10.

Location of low copy genes in chromosomes of Brachiaria spp.

Nani TF, Schnable JC, Washburn JD, Albert P, Pereira WA, Sobrinho FS, Birchler JA, Techio VH.

Mol Biol Rep. 2018 Apr;45(2):109-118. doi: 10.1007/s11033-018-4144-5. Epub 2018 Jan 12.

PMID:
29330722
11.

Cohesion and centromere activity are required for phosphorylation of histone H3 in maize.

Liu Y, Su H, Liu Y, Zhang J, Dong Q, Birchler JA, Han F.

Plant J. 2017 Dec;92(6):1121-1131. doi: 10.1111/tpj.13748. Epub 2017 Nov 9.

12.

Editing the Phenotype: A Revolution for Quantitative Genetics.

Birchler JA.

Cell. 2017 Oct 5;171(2):269-270. doi: 10.1016/j.cell.2017.09.024.

13.

Recurrent establishment of de novo centromeres in the pericentromeric region of maize chromosome 3.

Zhao H, Zeng Z, Koo DH, Gill BS, Birchler JA, Jiang J.

Chromosome Res. 2017 Oct;25(3-4):299-311. doi: 10.1007/s10577-017-9564-x. Epub 2017 Aug 22.

PMID:
28831743
14.

Mechanisms of Mendelian dominance.

Veitia RA, Caburet S, Birchler JA.

Clin Genet. 2018 Mar;93(3):419-428. doi: 10.1111/cge.13107. Epub 2017 Oct 26. Review.

PMID:
28755412
15.

Dynamic location changes of Bub1-phosphorylated-H2AThr133 with CENH3 nucleosome in maize centromeric regions.

Su H, Liu Y, Dong Q, Feng C, Zhang J, Liu Y, Birchler JA, Han F.

New Phytol. 2017 Apr;214(2):682-694. doi: 10.1111/nph.14415. Epub 2017 Jan 12.

16.

Aging: Somatic Mutations, Epigenetic Drift and Gene Dosage Imbalance.

Veitia RA, Govindaraju DR, Bottani S, Birchler JA.

Trends Cell Biol. 2017 Apr;27(4):299-310. doi: 10.1016/j.tcb.2016.11.006. Epub 2016 Dec 9. Review.

PMID:
27939088
17.

Plant science: Hybrid vigour characterized.

Birchler JA.

Nature. 2016 Sep 29;537(7622):620-621. doi: 10.1038/nature19433. Epub 2016 Sep 7. No abstract available.

PMID:
27602522
18.

Production of Engineered Minichromosome Vectors via the Introduction of Telomere Sequences.

Graham N, Swyers N, Cody J, McCaw M, Zhao C, Birchler JA.

Methods Mol Biol. 2016;1469:1-13. doi: 10.1007/978-1-4939-4931-1_1.

PMID:
27557682
19.

Dynamic chromatin changes associated with de novo centromere formation in maize euchromatin.

Su H, Liu Y, Liu YX, Lv Z, Li H, Xie S, Gao Z, Pang J, Wang XJ, Lai J, Birchler JA, Han F.

Plant J. 2016 Dec;88(5):854-866. doi: 10.1111/tpj.13305. Epub 2016 Oct 14.

20.

Marcus Rhoades on Preferential Segregation in Maize.

Birchler JA.

Genetics. 2016 Aug;203(4):1489-90. doi: 10.1534/genetics.116.193011. No abstract available.

21.

Fast-Flowering Mini-Maize: Seed to Seed in 60 Days.

McCaw ME, Wallace JG, Albert PS, Buckler ES, Birchler JA.

Genetics. 2016 Sep;204(1):35-42. doi: 10.1534/genetics.116.191726. Epub 2016 Jul 20.

22.

Curt Stern on Somatic Crossing Over.

Birchler JA.

Genetics. 2016 Jun;203(2):615-6. doi: 10.1534/genetics.116.190652. No abstract available.

23.

Parallel Universes for Models of X Chromosome Dosage Compensation in Drosophila: A Review.

Birchler JA.

Cytogenet Genome Res. 2016;148(1):52-67. doi: 10.1159/000445924. Epub 2016 May 12. Review.

24.

High Quality Maize Centromere 10 Sequence Reveals Evidence of Frequent Recombination Events.

Wolfgruber TK, Nakashima MM, Schneider KL, Sharma A, Xie Z, Albert PS, Xu R, Bilinski P, Dawe RK, Ross-Ibarra J, Birchler JA, Presting GG.

Front Plant Sci. 2016 Mar 23;7:308. doi: 10.3389/fpls.2016.00308. eCollection 2016.

25.

Kinetics genetics: Incorporating the concept of genomic balance into an understanding of quantitative traits.

Birchler JA, Johnson AF, Veitia RA.

Plant Sci. 2016 Apr;245:128-34. doi: 10.1016/j.plantsci.2016.02.002. Epub 2016 Feb 6. Review.

PMID:
26940497
26.

Efficient Targeted Genome Modification in Maize Using CRISPR/Cas9 System.

Feng C, Yuan J, Wang R, Liu Y, Birchler JA, Han F.

J Genet Genomics. 2016 Jan 20;43(1):37-43. doi: 10.1016/j.jgg.2015.10.002. Epub 2015 Oct 30.

PMID:
26842992
27.

Plant minichromosomes.

Birchler JA, Graham ND, Swyers NC, Cody JP, McCaw ME.

Curr Opin Biotechnol. 2016 Feb;37:135-142. doi: 10.1016/j.copbio.2015.11.007. Epub 2015 Dec 23. Review.

PMID:
26723011
28.

Dynamic epigenetic states of maize centromeres.

Liu Y, Su H, Zhang J, Liu Y, Han F, Birchler JA.

Front Plant Sci. 2015 Oct 26;6:904. doi: 10.3389/fpls.2015.00904. eCollection 2015. Review.

29.

Generation of a Maize B Centromere Minimal Map Containing the Central Core Domain.

Ellis NA, Douglas RN, Jackson CE, Birchler JA, Dawe RK.

G3 (Bethesda). 2015 Oct 28;5(12):2857-64. doi: 10.1534/g3.115.022889.

30.

Mendel, mechanism, models, marketing, and more.

Birchler JA.

Cell. 2015 Sep 24;163(1):9-11. doi: 10.1016/j.cell.2015.09.008.

31.

Plant artificial chromosome technology and its potential application in genetic engineering.

Yu W, Yau YY, Birchler JA.

Plant Biotechnol J. 2016 May;14(5):1175-82. doi: 10.1111/pbi.12466. Epub 2015 Sep 15. Review.

32.

Cytogenetic and Sequence Analyses of Mitochondrial DNA Insertions in Nuclear Chromosomes of Maize.

Lough AN, Faries KM, Koo DH, Hussain A, Roark LM, Langewisch TL, Backes T, Kremling KA, Jiang J, Birchler JA, Newton KJ.

G3 (Bethesda). 2015 Sep 1;5(11):2229-39. doi: 10.1534/g3.115.020677.

33.

Engineered Minichromosomes in Plants: Structure, Function, and Applications.

Graham ND, Cody JP, Swyers NC, McCaw ME, Zhao C, Birchler JA.

Int Rev Cell Mol Biol. 2015;318:63-119. doi: 10.1016/bs.ircmb.2015.05.002. Epub 2015 Jun 17.

PMID:
26315884
34.

Models of buffering of dosage imbalances in protein complexes.

Veitia RA, Birchler JA.

Biol Direct. 2015 Aug 15;10:42. doi: 10.1186/s13062-015-0063-8.

35.

From Gigabyte to Kilobyte: A Bioinformatics Protocol for Mining Large RNA-Seq Transcriptomics Data.

Li J, Hou J, Sun L, Wilkins JM, Lu Y, Niederhuth CE, Merideth BR, Mawhinney TP, Mossine VV, Greenlief CM, Walker JC, Folk WR, Hannink M, Lubahn DB, Birchler JA, Cheng J.

PLoS One. 2015 Apr 22;10(4):e0125000. doi: 10.1371/journal.pone.0125000. eCollection 2015.

36.

Sequential de novo centromere formation and inactivation on a chromosomal fragment in maize.

Liu Y, Su H, Pang J, Gao Z, Wang XJ, Birchler JA, Han F.

Proc Natl Acad Sci U S A. 2015 Mar 17;112(11):E1263-71. doi: 10.1073/pnas.1418248112. Epub 2015 Mar 2.

37.

Promises and pitfalls of synthetic chromosomes in plants.

Birchler JA.

Trends Biotechnol. 2015 Mar;33(3):189-94. doi: 10.1016/j.tibtech.2014.12.010. Epub 2015 Jan 24. Review.

PMID:
25624060
38.

Engineered minichromosomes in plants.

Birchler JA.

Chromosome Res. 2015 Feb;23(1):77-85. doi: 10.1007/s10577-014-9454-4. Review.

PMID:
25596825
39.

X chromosome inactivation and active X upregulation in therian mammals: facts, questions, and hypotheses.

Veitia RA, Veyrunes F, Bottani S, Birchler JA.

J Mol Cell Biol. 2015 Feb;7(1):2-11. doi: 10.1093/jmcb/mjv001. Epub 2015 Jan 6. Review.

PMID:
25564545
40.

Heterosis: The genetic basis of hybrid vigour.

Birchler JA.

Nat Plants. 2015 Mar 3;1:15020. doi: 10.1038/nplants.2015.20. No abstract available.

PMID:
27246887
41.

Facts and artifacts in studies of gene expression in aneuploids and sex chromosomes.

Birchler JA.

Chromosoma. 2014 Oct;123(5):459-69. doi: 10.1007/s00412-014-0478-5. Epub 2014 Jul 29. Review.

PMID:
25069760
42.

Interploidy hybridization barrier of endosperm as a dosage interaction.

Birchler JA.

Front Plant Sci. 2014 Jun 26;5:281. doi: 10.3389/fpls.2014.00281. eCollection 2014.

43.

Dosage, duplication, and diploidization: clarifying the interplay of multiple models for duplicate gene evolution over time.

Conant GC, Birchler JA, Pires JC.

Curr Opin Plant Biol. 2014 Jun;19:91-8. doi: 10.1016/j.pbi.2014.05.008. Epub 2014 Jun 5. Review.

PMID:
24907529
44.

Engineered minichromosomes in plants.

Birchler JA.

Curr Opin Plant Biol. 2014 Jun;19:76-80. doi: 10.1016/j.pbi.2014.05.009. Epub 2014 Jun 4. Review.

PMID:
24906050
45.

Histone phosphorylation: its role during cell cycle and centromere identity in plants.

Zhang B, Dong Q, Su H, Birchler JA, Han F.

Cytogenet Genome Res. 2014;143(1-3):144-9. doi: 10.1159/000360435. Epub 2014 Apr 4. Review.

PMID:
24713809
46.

Molecular mechanisms of homologous chromosome pairing and segregation in plants.

Zhang J, Zhang B, Su H, Birchler JA, Han F.

J Genet Genomics. 2014 Mar 20;41(3):117-23. doi: 10.1016/j.jgg.2013.12.003. Epub 2013 Dec 18. Review.

PMID:
24656232
47.

Does ectopic cell death cause somatic mutations in the neighboring cells by activating transposons?

Birchler JA.

Mob Genet Elements. 2014 Jan 1;4(1):e28040. Epub 2014 Jan 29.

48.

The Gene Balance Hypothesis: dosage effects in plants.

Birchler JA, Veitia RA.

Methods Mol Biol. 2014;1112:25-32. doi: 10.1007/978-1-62703-773-0_2. Review.

PMID:
24478005
49.

Meiotic behavior of small chromosomes in maize.

Birchler JA, Han F.

Front Plant Sci. 2013 Dec 17;4:505. doi: 10.3389/fpls.2013.00505. Review.

50.

Polyploids as a "model system" for the study of heterosis.

Washburn JD, Birchler JA.

Plant Reprod. 2014 Mar;27(1):1-5. doi: 10.1007/s00497-013-0237-4. Epub 2013 Nov 8. Review.

PMID:
24202960

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