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Items: 27

1.

High-Throughput Sequencing to Investigate Phytopathogenic Fungal Propagules Caught in Baited Insect Traps.

Tremblay ÉD, Kimoto T, Bérubé JA, Bilodeau GJ.

J Fungi (Basel). 2019 Feb 12;5(1). pii: E15. doi: 10.3390/jof5010015.

2.

An amplicon-based sequencing approach for the study of aeromycology.

Mbareche H, Veillette M, Bilodeau GJ, Duchaine C.

J Xenobiot. 2018 Oct 29;8(1):7810. doi: 10.4081/xeno.2018.7810. eCollection 2018 Oct 20. No abstract available.

3.

An Overview of Canadian Research Activities on Diseases Caused by Phytophthora ramorum: Results, Progress, and Challenges.

Shamoun SF, Rioux D, Callan B, James D, Hamelin RC, Bilodeau GJ, Elliott M, Lévesque CA, Becker E, McKenney D, Pedlar J, Bailey K, Brière SC, Niquidet K, Allen E.

Plant Dis. 2018 Jul;102(7):1218-1233. doi: 10.1094/PDIS-11-17-1730-FE. Epub 2018 Jun 7.

PMID:
30673582
4.

Advances in Diagnostics of Downy Mildews: Lessons Learned from Other Oomycetes and Future Challenges.

Crandall SG, Rahman A, Quesada-Ocampo LM, Martin FN, Bilodeau GJ, Miles TD.

Plant Dis. 2018 Feb;102(2):265-275. doi: 10.1094/PDIS-09-17-1455-FE. Epub 2018 Jan 5. Review.

PMID:
30673522
5.

Fungal aerosols at dairy farms using molecular and culture techniques.

Mbareche H, Veillette M, Bilodeau GJ, Duchaine C.

Sci Total Environ. 2019 Feb 25;653:253-263. doi: 10.1016/j.scitotenv.2018.10.345. Epub 2018 Oct 26.

PMID:
30412870
6.

Bioaerosol Sampler Choice Should Consider Efficiency and Ability of Samplers to Cover Microbial Diversity.

Mbareche H, Veillette M, Bilodeau GJ, Duchaine C.

Appl Environ Microbiol. 2018 Sep 14. pii: AEM.01589-18. doi: 10.1128/AEM.01589-18. [Epub ahead of print]

PMID:
30217848
7.

Fungal bioaerosols in biomethanization facilities.

Mbareche H, Veillette M, Dubuis MÈ, Bakhiyi B, Marchand G, Zayed J, Lavoie J, Bilodeau GJ, Duchaine C.

J Air Waste Manag Assoc. 2018 Nov;68(11):1198-1210. doi: 10.1080/10962247.2018.1492472. Epub 2018 Aug 27.

PMID:
29939829
8.

Screening for Exotic Forest Pathogens to Increase Survey Capacity Using Metagenomics.

Tremblay ÉD, Duceppe MO, Bérubé JA, Kimoto T, Lemieux C, Bilodeau GJ.

Phytopathology. 2018 Dec;108(12):1509-1521. doi: 10.1094/PHYTO-02-18-0028-R. Epub 2018 Nov 2.

PMID:
29923801
9.

Metaxa2 Database Builder: enabling taxonomic identification from metagenomic or metabarcoding data using any genetic marker.

Bengtsson-Palme J, Richardson RT, Meola M, Wurzbacher C, Tremblay ÉD, Thorell K, Kanger K, Eriksson KM, Bilodeau GJ, Johnson RM, Hartmann M, Nilsson RH.

Bioinformatics. 2018 Dec 1;34(23):4027-4033. doi: 10.1093/bioinformatics/bty482.

10.

Genome-Enhanced Detection and Identification (GEDI) of plant pathogens.

Feau N, Beauseigle S, Bergeron MJ, Bilodeau GJ, Birol I, Cervantes-Arango S, Dhillon B, Dale AL, Herath P, Jones SJM, Lamarche J, Ojeda DI, Sakalidis ML, Taylor G, Tsui CKM, Uzunovic A, Yueh H, Tanguay P, Hamelin RC.

PeerJ. 2018 Feb 22;6:e4392. doi: 10.7717/peerj.4392. eCollection 2018.

11.

Development of Real-Time Isothermal Amplification Assays for On-Site Detection of Phytophthora infestans in Potato Leaves.

Si Ammour M, Bilodeau GJ, Tremblay DM, Van der Heyden H, Yaseen T, Varvaro L, Carisse O.

Plant Dis. 2017 Jul;101(7):1269-1277. doi: 10.1094/PDIS-12-16-1780-RE. Epub 2017 May 3.

PMID:
30682973
12.

Systematic Development of Phytophthora Species-Specific Mitochondrial Diagnostic Markers for Economically Important Members of the Genus.

Miles TD, Martin FN, Robideau GP, Bilodeau GJ, Coffey MD.

Plant Dis. 2017 Jul;101(7):1162-1170. doi: 10.1094/PDIS-09-16-1224-RE. Epub 2017 Apr 19.

PMID:
30682972
13.

A next generation sequencing approach with a suitable bioinformatics workflow to study fungal diversity in bioaerosols released from two different types of composting plants.

Mbareche H, Veillette M, Bonifait L, Dubuis ME, Benard Y, Marchand G, Bilodeau GJ, Duchaine C.

Sci Total Environ. 2017 Dec 1;601-602:1306-1314. doi: 10.1016/j.scitotenv.2017.05.235. Epub 2017 Jun 9.

PMID:
28605849
14.

Development and Validation of Polymorphic Microsatellite Loci for the NA2 Lineage of Phytophthora ramorum from Whole Genome Sequence Data.

Gagnon MC, Feau N, Dale AL, Dhillon B, Hamelin RC, Brasier CM, Grünwald NJ, Brière SC, Bilodeau GJ.

Plant Dis. 2017 May;101(5):666-673. doi: 10.1094/PDIS-11-16-1586-RE. Epub 2017 Mar 16.

PMID:
30678572
15.

Genome sequences of six Phytophthora species threatening forest ecosystems.

Feau N, Taylor G, Dale AL, Dhillon B, Bilodeau GJ, Birol I, Jones SJ, Hamelin RC.

Genom Data. 2016 Oct 3;10:85-88. eCollection 2016 Dec.

16.

Genome Analysis and Development of a Multiplex TaqMan Real-Time PCR for Specific Identification and Detection of Clavibacter michiganensis subsp. nebraskensis.

Tambong JT, Xu R, Daayf F, Brière S, Bilodeau GJ, Tropiano R, Hartke A, Reid LM, Cott M, Cote T, Agarkova I.

Phytopathology. 2016 Dec;106(12):1473-1485. Epub 2016 Oct 4.

17.

Identification of the Dominant Genotypes of Phytophthora infestans in Canada Using Real-Time PCR with ASO-PCR Assays.

Gagnon MC, Kawchuk L, Tremblay DM, Carisse O, Danies G, Fry WE, Lévesque CA, Bilodeau GJ.

Plant Dis. 2016 Jul;100(7):1482-1491. doi: 10.1094/PDIS-07-15-0763-RE. Epub 2016 Mar 7.

PMID:
30686184
18.

Development of Polymorphic Microsatellite Loci for Potato Wart from Next-Generation Sequence Data.

Gagnon MC, van der Lee TA, Bonants PJ, Smith DS, Li X, Lévesque CA, Bilodeau GJ.

Phytopathology. 2016 Jun;106(6):636-44. doi: 10.1094/PHYTO-12-15-0317-R. Epub 2016 Apr 8.

19.

Molecular Detection of 10 of the Most Unwanted Alien Forest Pathogens in Canada Using Real-Time PCR.

Lamarche J, Potvin A, Pelletier G, Stewart D, Feau N, Alayon DI, Dale AL, Coelho A, Uzunovic A, Bilodeau GJ, Brière SC, Hamelin RC, Tanguay P.

PLoS One. 2015 Aug 14;10(8):e0134265. doi: 10.1371/journal.pone.0134265. eCollection 2015.

20.

Draft Genome Sequence of Clavibacter michiganensis subsp. nebraskensis Strain DOAB 397, Isolated from an Infected Field Corn Plant in Manitoba, Canada.

Tambong JT, Xu R, Adam Z, Cott M, Rose K, Reid LM, Daayf F, Brière S, Bilodeau GJ.

Genome Announc. 2015 Jul 9;3(4). pii: e00768-15. doi: 10.1128/genomeA.00768-15.

21.

Integrated air stream micromixer for performing bioanalytical assays on a plastic chip.

Geissler M, Li K, Zhang X, Clime L, Robideau GP, Bilodeau GJ, Veres T.

Lab Chip. 2014 Oct 7;14(19):3750-61. doi: 10.1039/c4lc00769g.

PMID:
25091476
22.

Development of a multiplex assay for genus- and species-specific detection of Phytophthora based on differences in mitochondrial gene order.

Bilodeau GJ, Martin FN, Coffey MD, Blomquist CL.

Phytopathology. 2014 Jul;104(7):733-48. doi: 10.1094/PHYTO-09-13-0263-R.

23.

Membrane-based oligonucleotide array developed from multiple markers for the detection of many Phytophthora species.

Chen W, Djama ZR, Coffey MD, Martin FN, Bilodeau GJ, Radmer L, Denton G, Lévesque CA.

Phytopathology. 2013 Jan;103(1):43-54. doi: 10.1094/PHYTO-04-12-0092-R.

24.

Development of an assay for rapid detection and quantification of Verticillium dahliae in soil.

Bilodeau GJ, Koike ST, Uribe P, Martin FN.

Phytopathology. 2012 Mar;102(3):331-43. doi: 10.1094/PHYTO-05-11-0130.

25.

Standardizing the nomenclature for clonal lineages of the sudden oak death pathogen, Phytophthora ramorum.

Grünwald NJ, Goss EM, Ivors K, Garbelotto M, Martin FN, Prospero S, Hansen E, Bonants PJ, Hamelin RC, Chastagner G, Werres S, Rizzo DM, Abad G, Beales P, Bilodeau GJ, Blomquist CL, Brasier C, Brière SC, Chandelier A, Davidson JM, Denman S, Elliott M, Frankel SJ, Goheen EM, de Gruyter H, Heungens K, James D, Kanaskie A, McWilliams MG, Man in 't Veld W, Moralejo E, Osterbauer NK, Palm ME, Parke JL, Sierra AM, Shamoun SF, Shishkoff N, Tooley PW, Vettraino AM, Webber J, Widmer TL.

Phytopathology. 2009 Jul;99(7):792-5. doi: 10.1094/PHYTO-99-7-0792.

26.

Evaluation of molecular markers for Phytophthora ramorum detection and identification: testing for specificity using a standardized library of isolates.

Martin FN, Coffey MD, Zeller K, Hamelin RC, Tooley P, Garbelotto M, Hughes KJ, Kubisiak T, Bilodeau GJ, Levy L, Blomquist C, Berger PH.

Phytopathology. 2009 Apr;99(4):390-403. doi: 10.1094/PHYTO-99-4-0390.

27.

Molecular Detection of Phytophthora ramorum by Real-Time Polymerase Chain Reaction Using TaqMan, SYBR Green, and Molecular Beacons.

Bilodeau GJ, Lévesque CA, de Cock AW, Duchaine C, Brière S, Uribe P, Martin FN, Hamelin RC.

Phytopathology. 2007 May;97(5):632-42. doi: 10.1094/PHYTO-97-5-0632.

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