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Items: 25

1.

Roles for Stress Response and Cell Wall Biosynthesis Pathways in Caspofungin Tolerance in Cryptococcus neoformans.

Pianalto KM, Billmyre RB, Telzrow CL, Alspaugh JA.

Genetics. 2019 Sep;213(1):213-227. doi: 10.1534/genetics.119.302290. Epub 2019 Jul 2.

2.

Genetic and Genomic Analyses Reveal Boundaries between Species Closely Related to Cryptococcus Pathogens.

Passer AR, Coelho MA, Billmyre RB, Nowrousian M, Mittelbach M, Yurkov AM, Averette AF, Cuomo CA, Sun S, Heitman J.

MBio. 2019 Jun 11;10(3). pii: e00764-19. doi: 10.1128/mBio.00764-19.

3.

Gastrointestinal microbiota alteration induced by Mucor circinelloides in a murine model.

Mueller KD, Zhang H, Serrano CR, Billmyre RB, Huh EY, Wiemann P, Keller NP, Wang Y, Heitman J, Lee SC.

J Microbiol. 2019 Jun;57(6):509-520. doi: 10.1007/s12275-019-8682-x. Epub 2019 May 27.

4.

Broad antifungal resistance mediated by RNAi-dependent epimutation in the basal human fungal pathogen Mucor circinelloides.

Chang Z, Billmyre RB, Lee SC, Heitman J.

PLoS Genet. 2019 Feb 11;15(2):e1007957. doi: 10.1371/journal.pgen.1007957. eCollection 2019 Feb.

5.

A High-Resolution Map of Meiotic Recombination in Cryptococcus deneoformans Demonstrates Decreased Recombination in Unisexual Reproduction.

Roth C, Sun S, Billmyre RB, Heitman J, Magwene PM.

Genetics. 2018 Jun;209(2):567-578. doi: 10.1534/genetics.118.300996. Epub 2018 Apr 6.

6.

RNAi is a critical determinant of centromere evolution in closely related fungi.

Yadav V, Sun S, Billmyre RB, Thimmappa BC, Shea T, Lintner R, Bakkeren G, Cuomo CA, Heitman J, Sanyal K.

Proc Natl Acad Sci U S A. 2018 Mar 20;115(12):3108-3113. doi: 10.1073/pnas.1713725115. Epub 2018 Mar 5.

7.

Whole-Genome Analysis Illustrates Global Clonal Population Structure of the Ubiquitous Dermatophyte Pathogen Trichophyton rubrum.

Persinoti GF, Martinez DA, Li W, Döğen A, Billmyre RB, Averette A, Goldberg JM, Shea T, Young S, Zeng Q, Oliver BG, Barton R, Metin B, Hilmioğlu-Polat S, Ilkit M, Gräser Y, Martinez-Rossi NM, White TC, Heitman J, Cuomo CA.

Genetics. 2018 Apr;208(4):1657-1669. doi: 10.1534/genetics.117.300573. Epub 2018 Feb 21.

8.

Natural mismatch repair mutations mediate phenotypic diversity and drug resistance in Cryptococcus deuterogattii.

Billmyre RB, Clancey SA, Heitman J.

Elife. 2017 Sep 26;6. pii: e28802. doi: 10.7554/eLife.28802.

9.

Genetic and epigenetic engines of diversity in pathogenic microbes.

Billmyre RB, Heitman J.

PLoS Pathog. 2017 Sep 14;13(9):e1006468. doi: 10.1371/journal.ppat.1006468. eCollection 2017 Sep. Review. No abstract available.

10.

Importance of Resolving Fungal Nomenclature: the Case of Multiple Pathogenic Species in the Cryptococcus Genus.

Hagen F, Lumbsch HT, Arsic Arsenijevic V, Badali H, Bertout S, Billmyre RB, Bragulat MR, Cabañes FJ, Carbia M, Chakrabarti A, Chaturvedi S, Chaturvedi V, Chen M, Chowdhary A, Colom MF, Cornely OA, Crous PW, Cuétara MS, Diaz MR, Espinel-Ingroff A, Fakhim H, Falk R, Fang W, Herkert PF, Ferrer Rodríguez C, Fraser JA, Gené J, Guarro J, Idnurm A, Illnait-Zaragozi MT, Khan Z, Khayhan K, Kolecka A, Kurtzman CP, Lagrou K, Liao W, Linares C, Meis JF, Nielsen K, Nyazika TK, Pan W, Pekmezovic M, Polacheck I, Posteraro B, de Queiroz Telles F Filho, Romeo O, Sánchez M, Sampaio A, Sanguinetti M, Sriburee P, Sugita T, Taj-Aldeen SJ, Takashima M, Taylor JW, Theelen B, Tomazin R, Verweij PE, Wahyuningsih R, Wang P, Boekhout T.

mSphere. 2017 Aug 30;2(4). pii: e00238-17. doi: 10.1128/mSphere.00238-17. eCollection 2017 Jul-Aug.

11.

Fungal genome and mating system transitions facilitated by chromosomal translocations involving intercentromeric recombination.

Sun S, Yadav V, Billmyre RB, Cuomo CA, Nowrousian M, Wang L, Souciet JL, Boekhout T, Porcel B, Wincker P, Granek JA, Sanyal K, Heitman J.

PLoS Biol. 2017 Aug 11;15(8):e2002527. doi: 10.1371/journal.pbio.2002527. eCollection 2017 Aug.

12.

Elucidation of the calcineurin-Crz1 stress response transcriptional network in the human fungal pathogen Cryptococcus neoformans.

Chow EW, Clancey SA, Billmyre RB, Averette AF, Granek JA, Mieczkowski P, Cardenas ME, Heitman J.

PLoS Genet. 2017 Apr 4;13(4):e1006667. doi: 10.1371/journal.pgen.1006667. eCollection 2017 Apr.

13.

Proteogenomics produces comprehensive and highly accurate protein-coding gene annotation in a complete genome assembly of Malassezia sympodialis.

Zhu Y, Engström PG, Tellgren-Roth C, Baudo CD, Kennell JC, Sun S, Billmyre RB, Schröder MS, Andersson A, Holm T, Sigurgeirsson B, Wu G, Sankaranarayanan SR, Siddharthan R, Sanyal K, Lundeberg J, Nystedt B, Boekhout T, Dawson TL Jr, Heitman J, Scheynius A, Lehtiö J.

Nucleic Acids Res. 2017 Mar 17;45(5):2629-2643. doi: 10.1093/nar/gkx006.

14.

Identification of small RNAs in extracellular vesicles from the commensal yeast Malassezia sympodialis.

Rayner S, Bruhn S, Vallhov H, Andersson A, Billmyre RB, Scheynius A.

Sci Rep. 2017 Jan 4;7:39742. doi: 10.1038/srep39742.

15.

Cancer-associated isocitrate dehydrogenase mutations induce mitochondrial DNA instability.

Kingsbury JM, Shamaprasad N, Billmyre RB, Heitman J, Cardenas ME.

Hum Mol Genet. 2016 Aug 15;25(16):3524-3538. doi: 10.1093/hmg/ddw195. Epub 2016 Jul 17.

16.

Gene Network Polymorphism Illuminates Loss and Retention of Novel RNAi Silencing Components in the Cryptococcus Pathogenic Species Complex.

Feretzaki M, Billmyre RB, Clancey SA, Wang X, Heitman J.

PLoS Genet. 2016 Mar 4;12(3):e1005868. doi: 10.1371/journal.pgen.1005868. eCollection 2016 Mar.

17.

Unisexual reproduction drives meiotic recombination and phenotypic and karyotypic plasticity in Cryptococcus neoformans.

Sun S, Billmyre RB, Mieczkowski PA, Heitman J.

PLoS Genet. 2014 Dec 11;10(12):e1004849. doi: 10.1371/journal.pgen.1004849. eCollection 2014 Dec.

18.

Unisexual versus bisexual mating in Cryptococcus neoformans: Consequences and biological impacts.

Fu C, Sun S, Billmyre RB, Roach KC, Heitman J.

Fungal Genet Biol. 2015 May;78:65-75. doi: 10.1016/j.fgb.2014.08.008. Epub 2014 Aug 27. Review.

19.

Cryptococcus gattii VGIII isolates causing infections in HIV/AIDS patients in Southern California: identification of the local environmental source as arboreal.

Springer DJ, Billmyre RB, Filler EE, Voelz K, Pursall R, Mieczkowski PA, Larsen RA, Dietrich FS, May RC, Filler SG, Heitman J.

PLoS Pathog. 2014 Aug 21;10(8):e1004285. doi: 10.1371/journal.ppat.1004285. eCollection 2014 Aug.

20.

Highly recombinant VGII Cryptococcus gattii population develops clonal outbreak clusters through both sexual macroevolution and asexual microevolution.

Billmyre RB, Croll D, Li W, Mieczkowski P, Carter DA, Cuomo CA, Kronstad JW, Heitman J.

MBio. 2014 Jul 29;5(4):e01494-14. doi: 10.1128/mBio.01494-14.

21.

Analysis of a food-borne fungal pathogen outbreak: virulence and genome of a Mucor circinelloides isolate from yogurt.

Lee SC, Billmyre RB, Li A, Carson S, Sykes SM, Huh EY, Mieczkowski P, Ko DC, Cuomo CA, Heitman J.

MBio. 2014 Jul 8;5(4):e01390-14. doi: 10.1128/mBio.01390-14.

22.

Analysis of the genome and transcriptome of Cryptococcus neoformans var. grubii reveals complex RNA expression and microevolution leading to virulence attenuation.

Janbon G, Ormerod KL, Paulet D, Byrnes EJ 3rd, Yadav V, Chatterjee G, Mullapudi N, Hon CC, Billmyre RB, Brunel F, Bahn YS, Chen W, Chen Y, Chow EW, Coppée JY, Floyd-Averette A, Gaillardin C, Gerik KJ, Goldberg J, Gonzalez-Hilarion S, Gujja S, Hamlin JL, Hsueh YP, Ianiri G, Jones S, Kodira CD, Kozubowski L, Lam W, Marra M, Mesner LD, Mieczkowski PA, Moyrand F, Nielsen K, Proux C, Rossignol T, Schein JE, Sun S, Wollschlaeger C, Wood IA, Zeng Q, Neuvéglise C, Newlon CS, Perfect JR, Lodge JK, Idnurm A, Stajich JE, Kronstad JW, Sanyal K, Heitman J, Fraser JA, Cuomo CA, Dietrich FS.

PLoS Genet. 2014 Apr 17;10(4):e1004261. doi: 10.1371/journal.pgen.1004261. eCollection 2014 Apr.

23.

RNAi function, diversity, and loss in the fungal kingdom.

Billmyre RB, Calo S, Feretzaki M, Wang X, Heitman J.

Chromosome Res. 2013 Dec;21(6-7):561-72. doi: 10.1007/s10577-013-9388-2. Review.

24.

Generators of phenotypic diversity in the evolution of pathogenic microorganisms.

Calo S, Billmyre RB, Heitman J.

PLoS Pathog. 2013 Mar;9(3):e1003181. doi: 10.1371/journal.ppat.1003181. Epub 2013 Mar 21. No abstract available.

25.

Photosynthetic microbial fuel cells with positive light response.

Zou Y, Pisciotta J, Billmyre RB, Baskakov IV.

Biotechnol Bioeng. 2009 Dec 1;104(5):939-46. doi: 10.1002/bit.22466.

PMID:
19575441

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