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Items: 39


Correction: 16S rRNA gene sequencing and healthy reference ranges for 28 clinically relevant microbial taxa from the human gut microbiome.

Almonacid DE, Kraal L, Ossandon FJ, Budovskaya YV, Cardenas JP, Bik EM, Goddard AD, Richman J, Apte ZS.

PLoS One. 2019 Feb 12;14(2):e0212474. doi: 10.1371/journal.pone.0212474. eCollection 2019.


The role of a sequencing-based clinical intestinal screening test in patients at high-risk for Clostridium difficile and other pathogens: a case report.

Hitschfeld M, Tovar E, Gupta S, Bik EM, Palmer C, Hoaglin MC, Almonacid DE, Richman J, Apte ZS.

J Med Case Rep. 2019 Jan 15;13(1):9. doi: 10.1186/s13256-018-1919-1.


Analysis and Correction of Inappropriate Image Duplication: the Molecular and Cellular Biology Experience.

Bik EM, Fang FC, Kullas AL, Davis RJ, Casadevall A.

Mol Cell Biol. 2018 Sep 28;38(20). pii: e00309-18. doi: 10.1128/MCB.00309-18. Print 2018 Oct 15.


Self-Sampling for Human Papillomavirus Testing: Increased Cervical Cancer Screening Participation and Incorporation in International Screening Programs.

Gupta S, Palmer C, Bik EM, Cardenas JP, Nuñez H, Kraal L, Bird SW, Bowers J, Smith A, Walton NA, Goddard AD, Almonacid DE, Zneimer S, Richman J, Apte ZS.

Front Public Health. 2018 Apr 9;6:77. doi: 10.3389/fpubh.2018.00077. eCollection 2018. Review.


Testing Hypotheses on Risk Factors for Scientific Misconduct via Matched-Control Analysis of Papers Containing Problematic Image Duplications.

Fanelli D, Costas R, Fang FC, Casadevall A, Bik EM.

Sci Eng Ethics. 2018 Feb 19. doi: 10.1007/s11948-018-0023-7. [Epub ahead of print]


Novel Microbial Diversity and Functional Potential in the Marine Mammal Oral Microbiome.

Dudek NK, Sun CL, Burstein D, Kantor RS, Aliaga Goltsman DS, Bik EM, Thomas BC, Banfield JF, Relman DA.

Curr Biol. 2017 Dec 18;27(24):3752-3762.e6. doi: 10.1016/j.cub.2017.10.040. Epub 2017 Nov 16.


Microbial biotransformations in the human distal gut.

Bik EM, Ugalde JA, Cousins J, Goddard AD, Richman J, Apte ZS.

Br J Pharmacol. 2018 Dec;175(24):4404-4414. doi: 10.1111/bph.14085. Epub 2017 Dec 22. Review.


16S rRNA gene sequencing and healthy reference ranges for 28 clinically relevant microbial taxa from the human gut microbiome.

Almonacid DE, Kraal L, Ossandon FJ, Budovskaya YV, Cardenas JP, Bik EM, Goddard AD, Richman J, Apte ZS.

PLoS One. 2017 May 3;12(5):e0176555. doi: 10.1371/journal.pone.0176555. eCollection 2017. Erratum in: PLoS One. 2019 Feb 12;14(2):e0212474.


The Hoops, Hopes, and Hypes of Human Microbiome Research.

Bik EM.

Yale J Biol Med. 2016 Sep 30;89(3):363-373. eCollection 2016 Sep. Review.


The Prevalence of Inappropriate Image Duplication in Biomedical Research Publications.

Bik EM, Casadevall A, Fang FC.

MBio. 2016 Jun 7;7(3). pii: e00809-16. doi: 10.1128/mBio.00809-16.


Marine mammals harbor unique microbiotas shaped by and yet distinct from the sea.

Bik EM, Costello EK, Switzer AD, Callahan BJ, Holmes SP, Wells RS, Carlin KP, Jensen ED, Venn-Watson S, Relman DA.

Nat Commun. 2016 Feb 3;7:10516. doi: 10.1038/ncomms10516.


Variation in Taxonomic Composition of the Fecal Microbiota in an Inbred Mouse Strain across Individuals and Time.

Hoy YE, Bik EM, Lawley TD, Holmes SP, Monack DM, Theriot JA, Relman DA.

PLoS One. 2015 Nov 13;10(11):e0142825. doi: 10.1371/journal.pone.0142825. eCollection 2015.


You Lose Some, You Win Some: Weight Loss Induces Microbiota and Metabolite Shifts.

Bik EM.

EBioMedicine. 2015 Jul 30;2(8):806-7. doi: 10.1016/j.ebiom.2015.07.037. eCollection 2015 Aug. Review. No abstract available.


Unrest at home: diarrheal disease and microbiota disturbance.

Bik EM, Relman DA.

Genome Biol. 2014 Jun 27;15(6):120. doi: 10.1186/gb4182.


Microbiome assembly across multiple body sites in low-birthweight infants.

Costello EK, Carlisle EM, Bik EM, Morowitz MJ, Relman DA.

MBio. 2013 Oct 29;4(6):e00782-13. doi: 10.1128/mBio.00782-13.


Host species and environmental effects on bacterial communities associated with Drosophila in the laboratory and in the natural environment.

Staubach F, Baines JF, Künzel S, Bik EM, Petrov DA.

PLoS One. 2013 Aug 13;8(8):e70749. doi: 10.1371/journal.pone.0070749. eCollection 2013.


Identification of Lactobacillus strains with probiotic features from the bottlenose dolphin (Tursiops truncatus).

Diaz MA, Bik EM, Carlin KP, Venn-Watson SK, Jensen ED, Jones SE, Gaston EP, Relman DA, Versalovic J.

J Appl Microbiol. 2013 Oct;115(4):1037-51. doi: 10.1111/jam.12305. Epub 2013 Aug 1.


Distinct distal gut microbiome diversity and composition in healthy children from Bangladesh and the United States.

Lin A, Bik EM, Costello EK, Dethlefsen L, Haque R, Relman DA, Singh U.

PLoS One. 2013;8(1):e53838. doi: 10.1371/journal.pone.0053838. Epub 2013 Jan 22.


Megraft: a software package to graft ribosomal small subunit (16S/18S) fragments onto full-length sequences for accurate species richness and sequencing depth analysis in pyrosequencing-length metagenomes and similar environmental datasets.

Bengtsson J, Hartmann M, Unterseher M, Vaishampayan P, Abarenkov K, Durso L, Bik EM, Garey JR, Eriksson KM, Nilsson RH.

Res Microbiol. 2012 Jul;163(6-7):407-12. doi: 10.1016/j.resmic.2012.07.001. Epub 2012 Jul 21.


Bacterial diversity in the oral cavity of 10 healthy individuals.

Bik EM, Long CD, Armitage GC, Loomer P, Emerson J, Mongodin EF, Nelson KE, Gill SR, Fraser-Liggett CM, Relman DA.

ISME J. 2010 Aug;4(8):962-74. doi: 10.1038/ismej.2010.30. Epub 2010 Mar 25.


Prevalence and diversity of microbes in the amniotic fluid, the fetal inflammatory response, and pregnancy outcome in women with preterm pre-labor rupture of membranes.

DiGiulio DB, Romero R, Kusanovic JP, Gómez R, Kim CJ, Seok KS, Gotsch F, Mazaki-Tovi S, Vaisbuch E, Sanders K, Bik EM, Chaiworapongsa T, Oyarzún E, Relman DA.

Am J Reprod Immunol. 2010 Jul 1;64(1):38-57. doi: 10.1111/j.1600-0897.2010.00830.x. Epub 2010 Mar 21.


Composition and function of the human-associated microbiota.

Bik EM.

Nutr Rev. 2009 Nov;67 Suppl 2:S164-71. doi: 10.1111/j.1753-4887.2009.00237.x. Review. Erratum in: Nutr Rev. 2010 Mar;68(3):189.


Microbial prevalence, diversity and abundance in amniotic fluid during preterm labor: a molecular and culture-based investigation.

DiGiulio DB, Romero R, Amogan HP, Kusanovic JP, Bik EM, Gotsch F, Kim CJ, Erez O, Edwin S, Relman DA.

PLoS One. 2008 Aug 26;3(8):e3056. doi: 10.1371/journal.pone.0003056.


[The microbiotics of the human body].

Bik EM.

Ned Tijdschr Geneeskd. 2008 Mar 22;152(12):668-73. Review. Dutch.


Dissecting biological "dark matter" with single-cell genetic analysis of rare and uncultivated TM7 microbes from the human mouth.

Marcy Y, Ouverney C, Bik EM, Lösekann T, Ivanova N, Martin HG, Szeto E, Platt D, Hugenholtz P, Relman DA, Quake SR.

Proc Natl Acad Sci U S A. 2007 Jul 17;104(29):11889-94. Epub 2007 Jul 9.


Development of the human infant intestinal microbiota.

Palmer C, Bik EM, DiGiulio DB, Relman DA, Brown PO.

PLoS Biol. 2007 Jul;5(7):e177. Epub 2007 Jun 26.


Assembly of the human intestinal microbiota.

Dethlefsen L, Eckburg PB, Bik EM, Relman DA.

Trends Ecol Evol. 2006 Sep;21(9):517-23. Epub 2006 Jul 3. Review.


Rapid quantitative profiling of complex microbial populations.

Palmer C, Bik EM, Eisen MB, Eckburg PB, Sana TR, Wolber PK, Relman DA, Brown PO.

Nucleic Acids Res. 2006 Jan 10;34(1):e5.


Molecular analysis of the bacterial microbiota in the human stomach.

Bik EM, Eckburg PB, Gill SR, Nelson KE, Purdom EA, Francois F, Perez-Perez G, Blaser MJ, Relman DA.

Proc Natl Acad Sci U S A. 2006 Jan 17;103(3):732-7. Epub 2006 Jan 4.


Diversity of the human intestinal microbial flora.

Eckburg PB, Bik EM, Bernstein CN, Purdom E, Dethlefsen L, Sargent M, Gill SR, Nelson KE, Relman DA.

Science. 2005 Jun 10;308(5728):1635-8. Epub 2005 Apr 14.


Management of an outbreak of Enterobacter cloacae in a neonatal unit using simple preventive measures.

v Dijk Y, Bik EM, Hochstenbach-Vernooij S, v d Vlist GJ, Savelkoul PH, Kaan JA, Diepersloot RJ.

J Hosp Infect. 2002 May;51(1):21-6.


[Severe watery diarrhea caused by Vibrio cholerae in lambs].

Visser IJ, Vellema P, Weitenberg AM, Bik EM.

Tijdschr Diergeneeskd. 1997 Nov 1;122(21):600-3. Dutch.


The evolution of epidemic Vibrio cholerae strains.

Mooi FR, Bik EM.

Trends Microbiol. 1997 Apr;5(4):161-5. Review.


Genetic organization and functional analysis of the otn DNA essential for cell-wall polysaccharide synthesis in Vibrio cholerae O139.

Bik EM, Bunschoten AE, Willems RJ, Chang AC, Mooi FR.

Mol Microbiol. 1996 May;20(4):799-811.


Construction and analysis of a Vibrio cholerae delta-aminolevulinic acid auxotroph which confers protective immunity in a rabbit model.

Rijpkema SG, Bik EM, Jansen WH, Gielen H, Versluis LF, Stouthamer AH, Guinée PA, Mooi FR.

Infect Immun. 1992 Jun;60(6):2188-93.


Specific detection of Mycobacterium tuberculosis complex strains by polymerase chain reaction.

Hermans PW, Schuitema AR, Van Soolingen D, Verstynen CP, Bik EM, Thole JE, Kolk AH, van Embden JD.

J Clin Microbiol. 1990 Jun;28(6):1204-13.

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