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Items: 8

1.

Convergent Random Forest predictor: methodology for predicting drug response from genome-scale data applied to anti-TNF response.

Bienkowska JR, Dalgin GS, Batliwalla F, Allaire N, Roubenoff R, Gregersen PK, Carulli JP.

Genomics. 2009 Dec;94(6):423-32. doi: 10.1016/j.ygeno.2009.08.008. Epub 2009 Aug 20.

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A search method for homologs of small proteins. Ubiquitin-like proteins in prokaryotic cells?

Bienkowska JR, Hartman H, Smith TF.

Protein Eng. 2003 Dec;16(12):897-904.

PMID:
14983069
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Eliminating superfluous neighbor pairs while threading fold models.

Bieńkowska JR, Rogers RG Jr, Smith TF.

Pac Symp Biocomput. 2000:107-18.

6.

Protein fold recognition by total alignment probability.

Bienkowska JR, Yu L, Zarakhovich S, Rogers RG Jr, Smith TF.

Proteins. 2000 Aug 15;40(3):451-62.

PMID:
10861936
7.

Filtered neighbors threading.

Bienkowska JR, Rogers RG Jr, Smith TF.

Proteins. 1999 Nov 15;37(3):346-59.

PMID:
10591096
8.

Performance of threading scoring functions designed using new optimization method.

Bieńkowska JR, Rogers RG Jr, Smith TF.

J Comput Biol. 1999 Fall-Winter;6(3-4):299-311.

PMID:
10582568

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