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Items: 1 to 50 of 66

1.

Using non-invasive metagenomics to characterize viral communities from wildlife.

Bergner LM, Orton RJ, da Silva Filipe A, Shaw AE, Becker DJ, Tello C, Biek R, Streicker DG.

Mol Ecol Resour. 2018 Sep 21. doi: 10.1111/1755-0998.12946. [Epub ahead of print]

PMID:
30240114
2.

Geography but not alternative host species explain the spread of raccoon rabies virus in Vermont.

Nadin-Davis SA, Fu Q, Trewby H, Biek R, Johnson RH, Real L.

Epidemiol Infect. 2018 Nov;146(15):1977-1986. doi: 10.1017/S0950268818001759. Epub 2018 Jun 26.

PMID:
29941066
3.

Landscape attributes governing local transmission of an endemic zoonosis: Rabies virus in domestic dogs.

Brunker K, Lemey P, Marston DA, Fooks AR, Lugelo A, Ngeleja C, Hampson K, Biek R.

Mol Ecol. 2018 Feb;27(3):773-788. doi: 10.1111/mec.14470. Epub 2018 Jan 29.

4.

Bluetongue virus spread in Europe is a consequence of climatic, landscape and vertebrate host factors as revealed by phylogeographic inference.

Jacquot M, Nomikou K, Palmarini M, Mertens P, Biek R.

Proc Biol Sci. 2017 Oct 11;284(1864). pii: 20170919. doi: 10.1098/rspb.2017.0919.

5.

Relative abundance of Mycobacterium bovis molecular types in cattle: a simulation study of potential epidemiological drivers.

Trewby H, Wright DM, Skuce RA, McCormick C, Mallon TR, Presho EL, Kao RR, Haydon DT, Biek R.

BMC Vet Res. 2017 Aug 22;13(1):268. doi: 10.1186/s12917-017-1190-5.

6.

Processes Underlying Rabies Virus Incursions across US-Canada Border as Revealed by Whole-Genome Phylogeography.

Trewby H, Nadin-Davis SA, Real LA, Biek R.

Emerg Infect Dis. 2017 Sep;23(9):1454-1461. doi: 10.3201/eid2309.170325.

7.

Persistent anthrax as a major driver of wildlife mortality in a tropical rainforest.

Hoffmann C, Zimmermann F, Biek R, Kuehl H, Nowak K, Mundry R, Agbor A, Angedakin S, Arandjelovic M, Blankenburg A, Brazolla G, Corogenes K, Couacy-Hymann E, Deschner T, Dieguez P, Dierks K, Düx A, Dupke S, Eshuis H, Formenty P, Yuh YG, Goedmakers A, Gogarten JF, Granjon AC, McGraw S, Grunow R, Hart J, Jones S, Junker J, Kiang J, Langergraber K, Lapuente J, Lee K, Leendertz SA, Léguillon F, Leinert V, Löhrich T, Marrocoli S, Mätz-Rensing K, Meier A, Merkel K, Metzger S, Murai M, Niedorf S, De Nys H, Sachse A, van Schijndel J, Thiesen U, Ton E, Wu D, Wieler LH, Boesch C, Klee SR, Wittig RM, Calvignac-Spencer S, Leendertz FH.

Nature. 2017 Aug 2;548(7665):82-86. doi: 10.1038/nature23309.

PMID:
28770842
8.

Effects of conservation management of landscapes and vertebrate communities on Lyme borreliosis risk in the United Kingdom.

Millins C, Gilbert L, Medlock J, Hansford K, Thompson DB, Biek R.

Philos Trans R Soc Lond B Biol Sci. 2017 Jun 5;372(1722). pii: 20160123. doi: 10.1098/rstb.2016.0123. Review.

9.

Application of high-throughput sequencing to whole rabies viral genome characterisation and its use for phylogenetic re-evaluation of a raccoon strain incursion into the province of Ontario.

Nadin-Davis SA, Colville A, Trewby H, Biek R, Real L.

Virus Res. 2017 Mar 15;232:123-133. doi: 10.1016/j.virusres.2017.02.007. Epub 2017 Feb 17.

10.

Using whole genome sequencing to investigate transmission in a multi-host system: bovine tuberculosis in New Zealand.

Crispell J, Zadoks RN, Harris SR, Paterson B, Collins DM, de-Lisle GW, Livingstone P, Neill MA, Biek R, Lycett SJ, Kao RR, Price-Carter M.

BMC Genomics. 2017 Feb 16;18(1):180. doi: 10.1186/s12864-017-3569-x.

11.

Heterogeneity in the abundance and distribution of Ixodes ricinus and Borrelia burgdorferi (sensu lato) in Scotland: implications for risk prediction.

Millins C, Gilbert L, Johnson P, James M, Kilbride E, Birtles R, Biek R.

Parasit Vectors. 2016 Nov 22;9(1):595.

12.

Bacterial Genomics Reveal the Complex Epidemiology of an Emerging Pathogen in Arctic and Boreal Ungulates.

Forde TL, Orsel K, Zadoks RN, Biek R, Adams LG, Checkley SL, Davison T, De Buck J, Dumond M, Elkin BT, Finnegan L, Macbeth BJ, Nelson C, Niptanatiak A, Sather S, Schwantje HM, van der Meer F, Kutz SJ.

Front Microbiol. 2016 Nov 7;7:1759. eCollection 2016.

13.

Elucidating the phylodynamics of endemic rabies virus in eastern Africa using whole-genome sequencing.

Brunker K, Marston DA, Horton DL, Cleaveland S, Fooks AR, Kazwala R, Ngeleja C, Lembo T, Sambo M, Mtema ZJ, Sikana L, Wilkie G, Biek R, Hampson K.

Virus Evol. 2015 Sep 10;1(1):vev011. eCollection 2015.

14.

Full Genome Sequence and sfRNA Interferon Antagonist Activity of Zika Virus from Recife, Brazil.

Donald CL, Brennan B, Cumberworth SL, Rezelj VV, Clark JJ, Cordeiro MT, Freitas de Oliveira França R, Pena LJ, Wilkie GS, Da Silva Filipe A, Davis C, Hughes J, Varjak M, Selinger M, Zuvanov L, Owsianka AM, Patel AH, McLauchlan J, Lindenbach BD, Fall G, Sall AA, Biek R, Rehwinkel J, Schnettler E, Kohl A.

PLoS Negl Trop Dis. 2016 Oct 5;10(10):e0005048. doi: 10.1371/journal.pntd.0005048. eCollection 2016 Oct.

15.

The Importance of Socio-Economic Versus Environmental Risk Factors for Reported Dengue Cases in Java, Indonesia.

Wijayanti SP, Porphyre T, Chase-Topping M, Rainey SM, McFarlane M, Schnettler E, Biek R, Kohl A.

PLoS Negl Trop Dis. 2016 Sep 7;10(9):e0004964. doi: 10.1371/journal.pntd.0004964. eCollection 2016 Sep.

16.

Understanding Past Population Dynamics: Bayesian Coalescent-Based Modeling with Covariates.

Gill MS, Lemey P, Bennett SN, Biek R, Suchard MA.

Syst Biol. 2016 Nov;65(6):1041-1056. Epub 2016 Jul 1.

17.

Genomic analysis of the multi-host pathogen Erysipelothrix rhusiopathiae reveals extensive recombination as well as the existence of three generalist clades with wide geographic distribution.

Forde T, Biek R, Zadoks R, Workentine ML, De Buck J, Kutz S, Opriessnig T, Trewby H, van der Meer F, Orsel K.

BMC Genomics. 2016 Jun 14;17:461. doi: 10.1186/s12864-016-2643-0.

18.

Correction: Dengue in Java, Indonesia: Relevance of Mosquito Indices as Risk Predictors.

Wijayanti SP, Sunaryo S, Suprihatin S, McFarlane M, Rainey SM, Dietrich I, Schnettler E, Biek R, Kohl A.

PLoS Negl Trop Dis. 2016 Apr 26;10(4):e0004683. doi: 10.1371/journal.pntd.0004683. eCollection 2016 Apr. No abstract available.

19.

Use of bacterial whole-genome sequencing to investigate local persistence and spread in bovine tuberculosis.

Trewby H, Wright D, Breadon EL, Lycett SJ, Mallon TR, McCormick C, Johnson P, Orton RJ, Allen AR, Galbraith J, Herzyk P, Skuce RA, Biek R, Kao RR.

Epidemics. 2016 Mar;14:26-35. doi: 10.1016/j.epidem.2015.08.003. Epub 2015 Oct 19.

20.

Dengue in Java, Indonesia: Relevance of Mosquito Indices as Risk Predictors.

Wijayanti SP, Sunaryo S, Suprihatin S, McFarlane M, Rainey SM, Dietrich I, Schnettler E, Biek R, Kohl A.

PLoS Negl Trop Dis. 2016 Mar 11;10(3):e0004500. doi: 10.1371/journal.pntd.0004500. eCollection 2016 Mar. Erratum in: PLoS Negl Trop Dis. 2016 Apr;10(4):e0004683.

21.

Genome-Wide Diversity and Phylogeography of Mycobacterium avium subsp. paratuberculosis in Canadian Dairy Cattle.

Ahlstrom C, Barkema HW, Stevenson K, Zadoks RN, Biek R, Kao R, Trewby H, Haupstein D, Kelton DF, Fecteau G, Labrecque O, Keefe GP, McKenna SL, Tahlan K, De Buck J.

PLoS One. 2016 Feb 12;11(2):e0149017. doi: 10.1371/journal.pone.0149017. eCollection 2016.

22.

Spatiotemporal Reconstruction of the Introduction of Hepatitis C Virus into Scotland and Its Subsequent Regional Transmission.

McNaughton AL, Cameron ID, Wignall-Fleming EB, Biek R, McLauchlan J, Gunson RN, Templeton K, Tan HM, Leitch EC.

J Virol. 2015 Nov;89(22):11223-32. doi: 10.1128/JVI.02106-15. Epub 2015 Aug 26.

23.

Widespread Reassortment Shapes the Evolution and Epidemiology of Bluetongue Virus following European Invasion.

Nomikou K, Hughes J, Wash R, Kellam P, Breard E, Zientara S, Palmarini M, Biek R, Mertens P.

PLoS Pathog. 2015 Aug 7;11(8):e1005056. doi: 10.1371/journal.ppat.1005056. eCollection 2015 Aug.

24.

An Invasive Mammal (the Gray Squirrel, Sciurus carolinensis) Commonly Hosts Diverse and Atypical Genotypes of the Zoonotic Pathogen Borrelia burgdorferi Sensu Lato.

Millins C, Magierecka A, Gilbert L, Edoff A, Brereton A, Kilbride E, Denwood M, Birtles R, Biek R.

Appl Environ Microbiol. 2015 Jul;81(13):4236-45. doi: 10.1128/AEM.00109-15. Epub 2015 Apr 17.

25.

Measurably evolving pathogens in the genomic era.

Biek R, Pybus OG, Lloyd-Smith JO, Didelot X.

Trends Ecol Evol. 2015 Jun;30(6):306-13. doi: 10.1016/j.tree.2015.03.009. Epub 2015 Apr 14. Review.

26.

Limitations of variable number of tandem repeat typing identified through whole genome sequencing of Mycobacterium avium subsp. paratuberculosis on a national and herd level.

Ahlstrom C, Barkema HW, Stevenson K, Zadoks RN, Biek R, Kao R, Trewby H, Haupstein D, Kelton DF, Fecteau G, Labrecque O, Keefe GP, McKenna SL, De Buck J.

BMC Genomics. 2015 Mar 8;16:161. doi: 10.1186/s12864-015-1387-6.

27.

Feline immunodeficiency virus (FIV) env recombinants are common in natural infections.

Bęczkowski PM, Hughes J, Biek R, Litster A, Willett BJ, Hosie MJ.

Retrovirology. 2014 Sep 17;11:80. doi: 10.1186/s12977-014-0080-1.

28.

Rapid evolution of the env gene leader sequence in cats naturally infected with feline immunodeficiency virus.

Bęczkowski PM, Hughes J, Biek R, Litster A, Willett BJ, Hosie MJ.

J Gen Virol. 2015 Apr;96(Pt 4):893-903. doi: 10.1099/vir.0.000035. Epub 2014 Dec 22.

29.

Analysis of the long control region of bovine papillomavirus type 1 associated with sarcoids in equine hosts indicates multiple cross-species transmission events and phylogeographical structure.

Trewby H, Ayele G, Borzacchiello G, Brandt S, Campo MS, Del Fava C, Marais J, Leonardi L, Vanselow B, Biek R, Nasir L.

J Gen Virol. 2014 Dec;95(Pt 12):2748-56. doi: 10.1099/vir.0.066589-0. Epub 2014 Sep 3.

30.

The role of viral evolution in rabies host shifts and emergence.

Mollentze N, Biek R, Streicker DG.

Curr Opin Virol. 2014 Oct;8:68-72. doi: 10.1016/j.coviro.2014.07.004. Epub 2014 Jul 26. Review.

31.

Behavioural and physiological adaptations to low-temperature environments in the common frog, Rana temporaria.

Muir AP, Biek R, Mable BK.

BMC Evol Biol. 2014 May 23;14:110. doi: 10.1186/1471-2148-14-110.

32.

Assembling evidence for identifying reservoirs of infection.

Viana M, Mancy R, Biek R, Cleaveland S, Cross PC, Lloyd-Smith JO, Haydon DT.

Trends Ecol Evol. 2014 May;29(5):270-9. doi: 10.1016/j.tree.2014.03.002. Epub 2014 Apr 11.

33.

Local adaptation with high gene flow: temperature parameters drive adaptation to altitude in the common frog (Rana temporaria).

Muir AP, Biek R, Thomas R, Mable BK.

Mol Ecol. 2014 Feb;23(3):561-74. doi: 10.1111/mec.12624. Epub 2014 Jan 20.

34.

Using genetic variation to infer associations with climate in the common frog, Rana temporaria.

Muir AP, Thomas R, Biek R, Mable BK.

Mol Ecol. 2013 Jul;22(14):3737-51. doi: 10.1111/mec.12334. Epub 2013 May 22.

PMID:
23692266
35.

Molecular evolutionary signatures reveal the role of host ecological dynamics in viral disease emergence and spread.

Duke-Sylvester SM, Biek R, Real LA.

Philos Trans R Soc Lond B Biol Sci. 2013 Feb 4;368(1614):20120194. doi: 10.1098/rstb.2012.0194. Print 2013 Mar 19.

36.

Whole genome sequencing reveals local transmission patterns of Mycobacterium bovis in sympatric cattle and badger populations.

Biek R, O'Hare A, Wright D, Mallon T, McCormick C, Orton RJ, McDowell S, Trewby H, Skuce RA, Kao RR.

PLoS Pathog. 2012;8(11):e1003008. doi: 10.1371/journal.ppat.1003008. Epub 2012 Nov 29.

37.

Integrating the landscape epidemiology and genetics of RNA viruses: rabies in domestic dogs as a model.

Brunker K, Hampson K, Horton DL, Biek R.

Parasitology. 2012 Dec;139(14):1899-913. doi: 10.1017/S003118201200090X. Epub 2012 Jul 20. Review.

38.

Emergence of divergent Zaire ebola virus strains in Democratic Republic of the Congo in 2007 and 2008.

Grard G, Biek R, Tamfum JJ, Fair J, Wolfe N, Formenty P, Paweska J, Leroy E.

J Infect Dis. 2011 Nov;204 Suppl 3:S776-84. doi: 10.1093/infdis/jir364.

39.

Phylogenetic characterisation of naturally occurring feline immunodeficiency virus in the United Kingdom.

Samman A, McMonagle EL, Logan N, Willett BJ, Biek R, Hosie MJ.

Vet Microbiol. 2011 Jun 2;150(3-4):239-47. doi: 10.1016/j.vetmic.2011.01.027. Epub 2011 Feb 1.

40.

Spatial analysis of feline immunodeficiency virus infection in cougars.

Wheeler DC, Waller LA, Biek R.

Spat Spatiotemporal Epidemiol. 2010 Jul;1(2-3):151-61. doi: 10.1016/j.sste.2010.03.009.

41.

The landscape genetics of infectious disease emergence and spread.

Biek R, Real LA.

Mol Ecol. 2010 Sep;19(17):3515-31. doi: 10.1111/j.1365-294X.2010.04679.x. Epub 2010 Jul 7. Review.

42.

Viral particles of endogenous betaretroviruses are released in the sheep uterus and infect the conceptus trophectoderm in a transspecies embryo transfer model.

Black SG, Arnaud F, Burghardt RC, Satterfield MC, Fleming JA, Long CR, Hanna C, Murphy L, Biek R, Palmarini M, Spencer TE.

J Virol. 2010 Sep;84(18):9078-85. doi: 10.1128/JVI.00950-10. Epub 2010 Jul 7.

43.

Feline immunodeficiency virus env gene evolution in experimentally infected cats.

Kraase M, Sloan R, Klein D, Logan N, McMonagle L, Biek R, Willett BJ, Hosie MJ.

Vet Immunol Immunopathol. 2010 Mar 15;134(1-2):96-106. doi: 10.1016/j.vetimm.2009.10.015. Epub 2009 Nov 7.

PMID:
19897254
44.

Rabies virus in raccoons, Ohio, 2004.

Henderson JC, Biek R, Hanlon CA, O'Dee S, Real LA.

Emerg Infect Dis. 2008 Apr;14(4):650-2. doi: 10.3201/eid1404.070972.

45.

The molecular biology and evolution of feline immunodeficiency viruses of cougars.

Poss M, Ross H, Rodrigo A, Terwee J, Vandewoude S, Biek R.

Vet Immunol Immunopathol. 2008 May 15;123(1-2):154-8. doi: 10.1016/j.vetimm.2008.01.022. Epub 2008 Jan 19. Review.

46.

Pandemic human viruses cause decline of endangered great apes.

Köndgen S, Kühl H, N'Goran PK, Walsh PD, Schenk S, Ernst N, Biek R, Formenty P, Mätz-Rensing K, Schweiger B, Junglen S, Ellerbrok H, Nitsche A, Briese T, Lipkin WI, Pauli G, Boesch C, Leendertz FH.

Curr Biol. 2008 Feb 26;18(4):260-4. doi: 10.1016/j.cub.2008.01.012. Epub 2008 Jan 31.

47.

A paradigm for virus-host coevolution: sequential counter-adaptations between endogenous and exogenous retroviruses.

Arnaud F, Caporale M, Varela M, Biek R, Chessa B, Alberti A, Golder M, Mura M, Zhang YP, Yu L, Pereira F, Demartini JC, Leymaster K, Spencer TE, Palmarini M.

PLoS Pathog. 2007 Nov;3(11):e170.

48.

Isolates of Zaire ebolavirus from wild apes reveal genetic lineage and recombinants.

Wittmann TJ, Biek R, Hassanin A, Rouquet P, Reed P, Yaba P, Pourrut X, Real LA, Gonzalez JP, Leroy EM.

Proc Natl Acad Sci U S A. 2007 Oct 23;104(43):17123-7. Epub 2007 Oct 17. Erratum in: Proc Natl Acad Sci U S A. 2007 Dec 4;104(49):19656.

49.

Infectious disease modeling and the dynamics of transmission.

Real LA, Biek R.

Curr Top Microbiol Immunol. 2007;315:33-49. Review.

PMID:
17848059
50.

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